hdhd2 (hdhd2,LOC107738843,LOC107743237)


Basic Information

Item Value
gene id hdhd2
gene name hdhd2,LOC107738843,LOC107743237
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18235369 ~ 18240105 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942475.2
GCTGCTCTCCTCCAGTCCAGCAGGTGGCGCCAATATGCCAAAAACAAGTCAGCACAAAAagcgaagaagaagaagaaccaaACAAACCGGTTGTCTTAAgtgatgGCGTCTCGCCGGGCGCTTAAAGCCGTGCTCATTGATCTAAGTGGGACTCTTCACATTGAGGATGCGGCTGTACCCGGAGCTCAGGAAGCACTCGCAAGgTTGCGTCGTGCTCCAGTGGCTCTCAAATTTGTAACTAACACAACGAAAGAATGTAAGAGGACGCTGCTTGAGCGACTGCGGCGTCTCAGTTTTGACATTGAAGAGCAGGAGATCTTTACGTCACTGACTGCAGCTCGAAACCTGCTGGAGCAGAAGGAGGTGCGCCCCCTGCTGCTGGTGGAGGACAGTGCACGCGAGGACTTCGCAGGTATCGAAACCTCAGATCCTAACGCTGTTGTGATAGGGTTAGCACCAGACCACTTCAACTATGAAACGCTTAATAAAGCTTTCAGGCTAATTCTGGATGGTGCACCTCTCATTGCCATCCATAAAGCCCGTTACTACAAGAGGAAAGACGGCCTGGCGTTGGGACCTGGACCGTTTGTGACAGGACTGGAATATTCCACTGACACGCAGGCCACTGTGGTGGGCAAACCAGAGAAAACCTTCTTCCTGGAAGCACTGCGGGATCTCAACTGCAGCCCTGAGGAGGCCGTAATGATCGGAGACGATGCTAGAGATGATGTTGGCGGAGCTCAGAACACAGGGATGCTGGGAATATTAGTCAAAactgGTAAATACAGAGCAGGTGATGAAGGCAAAATaaatcctcctcctcatctgaCCTGTGAGAGCTTCCCCGAAGCTGTTAATCACATCCTTCAACATCTGCTAGACACTAAATAACTTATCTGATGCTGTTTAAGGGtacatttaatatgtatatacagtatgtgtgccAAAAACACAATATAGTAATTAATTATGTAGCATTGTGTTAAAATGTCTGGTGATGCGGTTGTAGTTTTTGTGTTGGTTTCACTTGTCCTCCTGCATTTGTAAGTTTAACTAACTATTAGTCATCTGACCAAGTAACGTAATTCTTAAACACaaccactgtttaaaaaaaaaatgccttgaACCTCTCCTGTTACAGCATTACACTCCACACTCCAGGCTTGTACGAGGAAGCTGAGccaatgttataaataaaaactacacagatttaaaatgtcCA

Function

symbol description
hdhd2 Predicted to enable phosphatase activity. Predicted to be involved in dephosphorylation. Orthologous to human HDHD2 (haloacid dehalogenase like hydrolase domain containing 2).

NR:

description
haloacid dehalogenase-like hydrolase domain-containing protein 2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942475.2 True 1222 mRNA 0.46 7 18235369 18240105

Neighbor

gene id symbol gene type direction distance location
katnal2 katnal2,LOC107573073,LOC102797751 coding upstream 4265 18220768 ~ 18231104 (+)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding upstream 16455 18215583 ~ 18218914 (+)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107554852 coding upstream 477146 17751578 ~ 17758223 (+)
rassf6 rassf6 coding upstream 491773 17728618 ~ 17743596 (+)
lpar1 lpar1,LOC107554848,LOC107723319 coding upstream 546373 17665665 ~ 17688996 (+)
LOC113543970 LOC108276577,LOC108262336 coding downstream 125965 18366070 ~ 18372136 (+)
si:dkey-88l16.3 LOC108277154 coding downstream 132607 18372712 ~ 18398037 (+)
parm1 NA coding downstream 174482 18414587 ~ 18420080 (+)
trnam-cau_43 NA coding downstream 218980 18459085 ~ 18459156 (+)
trnar-ccu_14 NA coding downstream 219687 18459792 ~ 18459864 (+)
G271235 NA non-coding upstream 109577 18124822 ~ 18125792 (+)
G271104 NA non-coding upstream 461989 17769769 ~ 17773380 (+)
G271102 NA non-coding upstream 470840 17759550 ~ 17764529 (+)
G271076 NA non-coding upstream 544508 17689656 ~ 17690861 (+)
G270913 NA non-coding upstream 846390 17361945 ~ 17388979 (+)
G271340 NA non-coding downstream 58017 18298122 ~ 18348384 (+)
LOC117599343 NA non-coding downstream 185967 18426072 ~ 18427190 (+)
G271542 NA non-coding downstream 673152 18913257 ~ 18913627 (+)
G271544 NA non-coding downstream 677904 18918009 ~ 18918576 (+)
G271545 NA non-coding downstream 678489 18918594 ~ 18919467 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1134300 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1145991 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1146070 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1146769 17088529 ~ 17088600 (+)
trnar-ccu_12 NA other upstream 1146848 17088449 ~ 17088521 (+)
G271406 NA other downstream 164164 18404269 ~ 18407498 (+)
G271863 NA other downstream 1001604 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 1135987 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 1249101 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 1542322 19782427 ~ 19786831 (+)

Expression


Co-expression Network