si:ch211-243g18.2 (LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290)


Basic Information

Item Value
gene id si:ch211-243g18.2
gene name LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23220145 ~ 23232035 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942477.2
tgttcAGTATATAAAGGTCTCGTTTCTCTGCGCTGGACTTTGTGTTCTCCTCACACTCGTCCCTCCATCagcttcatccctccatcatcaaGTTGTGAAGACATCATGACATCCTCGTCCATGCGGAGTTTCTCGATTGGCAGACAGCCGTCCTTCTCCAACTTATCTCTGAGAGAGAGCGGCCGTGGCCGAGCCAAAGCGGCCGTCTCGTTCGCCGCGGCCAAGCCCCTCTCCCGTGCTTCCTCCATGAGCATGGCTGACCTGAACAGCCTCTCCAACCTGTCGCTCAATGGCCTGGGCAACAGCACCAATGAGAAGGAAGCCATGCAGAGCCTCAACAGCCGTCTAGCCAACTACCTGGAGAAAGTGCGCTCTCTGGAGAAGTCCAACGCTGACCTCGAGCTCCGCATCAAGCAGCTCATGCTGGAGCGGGTTCCCAAAGGCCATGACATAGACGCCATGTTGGCTCAGGCTCACGCTCTGGAGCACGAGGTCAGGAAGAGGACTCTGGAGAATGCTCGCATCATGCTGGAGATCGATAACGCCAAGCTGGCTGCAGATGATTTCAGAATCAAATGGGAAACTGAGAGTGCTATGTGTCAGTCAGTGGAGAGGGATTGTGTGGCTCTGAAAAAGGCCAAGACAGACCATGATCAGATCATCGCTACACTACGGGGAGACCTGGACAGCCTGAAAGAGGAGCTCTACTTCCTCAAGAAGAACCATGAGGAGGAGTTGGATAGCCTGCGAGCGCGGATAGCCCAGGAGGACGTCAACGTGGAGGTGGATGCCGCTCGTGGTCCCGAACTCGGCTCGGTGCTGTCCGAACTCCGCTCTCAGTACGAGGGCATCGTGCAGAAGAACAAAGAAGAGGCGGAAGACTGGTACCGCAAAAAGCTGGAGATGGTGCAGATGGAGGTGCGCGAGAGCAATGAGGCACTGCGAGGGGCTCAGAGCGAACTCACCGAGAGGCAGCGCTTCCTGCAGACCCTCGAGGTGGAACTGGAGAGTCTCCACAAACAGGTCGCCGCCCTGGAGGGGAACCTGGGTGAAACGGGTCAGAAGTACGCCATGGAGATGGAGCGTCTGCAGGCCACGCTGAACCAGCTGGAGGAGGATCTCTCTCAGCTTCGGCTCGACATGCAGCGCAACAAGACCGACTACGAGCAGCTCCTGCGCATCAAACAGAACCTGGAGCTGGAGATCGCCACCTACAGACGCTTGCTGGAGGGAGAGGAAGCCGTTAAGGAAGTCCTTCCACCTCCTAAGAAAGAGCCTGATGTTCGCACCAGGAAGATCGTCAAGGTGGTCACTCAAACCATGATCAACGGGAAAGTGGTGGACGAATCCAGCGAGGTTGAACAAATCGAAGAGTCCAAGAAGTGAGAATCAGAGTCCAAAATAAAGCTCCCATTGTTTGTTAGGGAACACATTAACCCCCCCTGGAGGCCCCTGAAGGACTCTCACGTTTCAGTTTCAGACCCATCAAAGCCTTTCAGACAGATCATCTTTCCCGCGTCTTTCTCCAGCAACACAAAGAGGCCACATTACTAGAGTAGACAGATATCTGCTTCAGCGCCGTACACGGGATAAGTCCGTCCTTTGTtctttagtgtttttatcaaaagAAACATCCTTTATGATTGTTTCCCTTTTCCTGCTTGCTTGCAATTTGAGCATTTCTTCTAGGATTATGAGAGCAGGATGAAAGTAGTACTCTGTAATCTGTAAACAATGTAAACGATTGATAGCGTAACGAATAagacaatgaaaataaaataatccatttaGACCTA

Function

NR:

description
PREDICTED: keratin, type I cytoskeletal 18-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942477.2 True 1796 mRNA 0.53 9 23220145 23232035

Neighbor

gene id symbol gene type direction distance location
ndufa8 ndufa8,LOC107686420 coding upstream 50628 23163709 ~ 23169517 (+)
rbm18 rbm18,LOC107686423 coding upstream 98438 23104677 ~ 23121707 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding upstream 175067 23040466 ~ 23045078 (+)
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding upstream 180596 23019928 ~ 23039549 (+)
rasgef1bb LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538 coding upstream 203919 23005004 ~ 23016226 (+)
LOC113543956 gpr21,LOC108433543,LOC107686419,LOC101884949,LOC107744074,LOC107597614,LOC107595548 coding downstream 110761 23342796 ~ 23345808 (+)
sh2d3ca sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235 coding downstream 334679 23566714 ~ 23618521 (+)
urm1 urm1 coding downstream 392102 23624137 ~ 23640347 (+)
cercam cercam,LOC107744239,LOC107597609,LOC107685123 coding downstream 430584 23662619 ~ 23676630 (+)
sardh sardh coding downstream 451515 23683550 ~ 23721518 (+)
G273719 NA non-coding upstream 84313 23135579 ~ 23135832 (+)
LOC117599346 NA non-coding upstream 146207 23068937 ~ 23073938 (+)
G273644 NA non-coding upstream 157800 23047921 ~ 23062345 (+)
G273683 NA non-coding upstream 181529 23037409 ~ 23038616 (+)
LOC117599377 NA non-coding upstream 225348 22992542 ~ 22994797 (+)
G273865 NA non-coding downstream 29011 23261046 ~ 23279789 (+)
G273880 NA non-coding downstream 53965 23286000 ~ 23333549 (+)
G273900 NA non-coding downstream 164773 23396808 ~ 23398531 (+)
G274161 NA non-coding downstream 443608 23675643 ~ 23677227 (+)
G274186 NA non-coding downstream 619962 23851997 ~ 23852218 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 74578 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 554575 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 845270 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 1186148 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1741265 21476087 ~ 21478880 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 12525 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 49526 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 705943 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 871038 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 994119 24226154 ~ 24232819 (+)

Expression


Co-expression Network