tmem120b (t120b,tmem120b,LOC107689172,LOC107658534,LOC103032067,LOC107758658)


Basic Information

Item Value
gene id tmem120b
gene name t120b,tmem120b,LOC107689172,LOC107658534,LOC103032067,LOC107758658
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18608968 ~ 18617502 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942481.2
CGTGAAGAtggtgcgcatgcgcagtgagGGTTGTCTACAAAGGGGAGAAAGCAGGTGAGCATGGCAGTGGGTACAATGTCACTGGAGAGATGTCGGAGTGAATGGgaagaaatagagaaagaataTCAACAGCTGCAGgagACTCATAAGGTGTACCGGCAGAAGCTGGAGGAGCTCACACACCTGCAGGTGATCTGCAGCAGTGCGATATGCAAACAGAGGAAAGGCCTTAAGGAGCTCGGACACACACTTCGTCGATGCGCAAAATCTTGCGACGACAAAGAGTCTCTGGCCATAAATCACCTGCAGGCGCAGATTAAAGAGAAGCGGAATGTCTTCTTCGACATGGAAGCCTACTTGCCAAAGAAGAACGGATTATACTTAAATCTGGTCCTTGGAAATGTGAACGTAACGCTGCTCAGTAACCAGGCAAAGTTTGCTTACAAGGATGAGTATGAGAAGTTTAAGCTGTGCATGACCATAATCCTGATGCTGGGTGCCATCACATGCCTCTTCCTGCTGAACTACCGCGTCACAGATGAAATCTTCAATTTTTTATTGGTGTGGTATTACTGTACGCTGACCATCAGGGAAAGCATTCTCATCAACAACGGCTCCAGaattAAAGGCTGGTGGGTTTCGCATCACTACGTCTCCACTTTTCTCTCGGGTGTCATGCTTACCTGGCCTGAGGGTGTGATATATCAGACGTTTAGGAGTCAGTTCCTGGCCTTCTCCATATATCAGAgttttGTGCAGTTTCTGCAGTATTATTATCAGAGCGGGTGTTTGTATCGGCTGCGTGCTTTAGGGGAGAGGAATCAGCTGGATCTAACAGTAGAGGGTTTCCAGTCATGGATGTGGAGAGGACTGACATTTCTTTTGCCATTCCTGTTCTTTGGGCATtTTTGGCAGCTGTACAACGCAGTAACTCTGTTTAAACTTGCTGCGCGGGATGACTGTAAAGAGtggcagGTGTTCATGCTGGCTCTGACGTTCCTCGTGCTGTTCCTGGGGAACTTCCTCACCACGCTGAAGGTGGTCCATCAGAAGGTACAGAAGAACAaccaggaggaggaggaacagaAGAAAAACTGAAACTATGCTCAACAACTAtggttgtcatggcaacatCCTCATCACtacagagactgtgtgtgaaagGAGAGTGAGAAGCTGTGTCTCAGTCCTCCATGTACTGTTGGGCATCTCTCGGATGTGTTTGGTGATGGACATTTCAGTGATTTTACACGCAGgtcaaacatttttattgtggTCGGAGTAAATGTTTACACGTGAGCTTGCTGCTGGAGATGCACACGTGATCAATGATTCACAAAGGGACAGGGGAGGAAAAGAGTTCTCAGATGTGCTGATTGATTAAACGATGCTGAATAAAAATCCTGTGTTTCCTG

Function

symbol description
tmem120b Predicted to be involved in fat cell differentiation. Predicted to be located in nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM120B (transmembrane protein 120B).

NR:

description
PREDICTED: transmembrane protein 120B-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942481.2 True 1415 mRNA 0.47 12 18608968 18617502

Neighbor

gene id symbol gene type direction distance location
orai1b orai1b,LOC108276842,LOC108425168,LOC107746203,LOC107758661,LOC107602056,LOC107689140 coding upstream 7998 18596622 ~ 18600970 (+)
dgcr2 dgcr2 coding upstream 13149 18583458 ~ 18595819 (+)
ess2 dgcr14,LOC107758656,LOC107746196 coding upstream 29980 18572129 ~ 18578988 (+)
dusp11 dusp11 coding upstream 38433 18563743 ~ 18570535 (+)
kcnv2a kcnv2,kcnv2a,LOC108428855,LOC107558705,LOC107726563,LOC107667263 coding upstream 93150 18513661 ~ 18515818 (+)
setd1ba setd1b,setd1ba,LOC108425171,LOC107689149,LOC107658592 coding downstream 18290 18635792 ~ 18657342 (+)
ggt5b LOC108277204 coding downstream 142661 18760163 ~ 18787587 (+)
nsd3 whsc1l1,LOC107687514,LOC107720716 coding downstream 250105 18867607 ~ 18897807 (+)
plpp5 plpp5,LOC108440555 coding downstream 282837 18900339 ~ 18906189 (+)
trnas-cga_2 NA coding downstream 317382 18934884 ~ 18934965 (+)
LOC117599343 NA non-coding upstream 181778 18426072 ~ 18427190 (+)
G271340 NA non-coding upstream 260584 18298122 ~ 18348384 (+)
G271235 NA non-coding upstream 483176 18124822 ~ 18125792 (+)
G271104 NA non-coding upstream 835588 17769769 ~ 17773380 (+)
G271102 NA non-coding upstream 844439 17759550 ~ 17764529 (+)
G271542 NA non-coding downstream 295755 18913257 ~ 18913627 (+)
G271544 NA non-coding downstream 300507 18918009 ~ 18918576 (+)
G271545 NA non-coding downstream 301092 18918594 ~ 18919467 (+)
G271548 NA non-coding downstream 305862 18923364 ~ 18923583 (+)
G271550 NA non-coding downstream 306313 18923815 ~ 18924071 (+)
G271406 NA other upstream 201470 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1507899 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1519590 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1519669 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1520368 17088529 ~ 17088600 (+)
G271863 NA other downstream 624207 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 758590 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 871704 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 1164925 19782427 ~ 19786831 (+)
G272180 NA other downstream 1176410 19793912 ~ 19825232 (+)

Expression


Co-expression Network