sftpba (LOC108276523)


Basic Information

Item Value
gene id sftpba
gene name LOC108276523
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20330486 ~ 20342383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942517.2
CCAAAGCAGAGCGCAGTGAAGAACTTCTCCAAACTGAAGAGCAGACTGAAAAGAGACATGACCTTCCCCAGGATCCTGCTGCTTTTATTCCTTCCACTTCTTGGCATTGccaaAGCAGGGATGCTCAGTCCAGAAGCAGTGCAGGTTACTAATGTCCTTAAGGATGATGAAGCCTGCCAAGACTGTATCCAAATCATAGACATCCTGAAACACTTGCTATTGGATGAAGAGTTCCAGAATCAGGTTCAGACGAAGCTGAAGAGCACTCTGGAGAAGGTGTGTGACTCGCTGCCTGCGCAGATTACGCAGCTGTGCCACAACGAGGTGGACAAAAACCTTCCTCTTGTCTTCACCTTCCTCACCGAACTGATGaACCCTAGACAAGTGTGCACTTACTTTAACCTGTGTGAAGGCGAGCTCAAGCTGCAGATGGAGGACATTTTGATGAATTACATAGAGAAGATCATCACACCCTCTACTGTCATGCTGGAGGCCTCGTTCCCATGCAGCGTTTGCACATATGCTTTGAATGTGCTGGACTGTCTCCTACCCACAGCACAGACAGAGAGTTTTGTGATCGGTGTGTTGGATGAAGTGTGTTCCCTCCTCCCCTTCCTCTTAAGAAGTCAGTGCTCACAGCTGGTTCAGAGATCAGTGAAAATGCTGCTTGAGGTGCTCCTGAACGCAGCATCGCCCAACTCCATCTGCTCTGTGTTCTGTCGCAGCTCAGCTCGACCCAGTAACATGGTGTCTCCTCTCTCGGACTGTGACTCGTGTCTGACTCTGGTCGTCCTGTCTCGTCTCCATTTGGGCTCGAACGCCACTCAGCCTCAGGTTACCTCCTTCCTGCGCTCCGTGTGCCAGTCGCACCCTGGCATCCTACCCAAGTGTGAGAGTTTTACTCAGCGCTATGGTGAGAAACTCCAGGGGATTCTGGGTAAAGAGGCAGTGGCTTTGGATGTGTGTGAGAGAGCTGATCTGTGTATGGGGATTAAGAGGACGGAGAAGGGAGACATTGGTGACCCCTGCACACTGGGGCCGAGCTACACCTGCCGAGATCTACAAACTGCTCACACCTGTGGGGTTGTCTCTTTCTGCCGGATGAACGTGTGGAAGTAGAAGTCTGTTCTCTGTTGGATTTCAGCTTCACAGCCGCTTCTCATCACAACATCAGCCACACAGAATCTAAACATGCAGTCTAAAAGGATTTTACAGAACTGTCCATGTTTGCTTTTCTAATCTGGGCTACGAGGTGAACCTGAGCTCTGACCTGCTATTGTTTAGACAAATACGATAAAGTGATAAGATAAAATCAGCCATCGAGGCAGTTTATTCTGACTCTTCAGCCATTATTAATTTAATGCTcatgatgtgttttttcttttgattaCTTTCACAACCAGCTTTTCTAAAAGTCAGCTGAACAAGATAAAATGATGGGCTTATGAACAAGCTGAGCCTTTTAAACTCTGGACACCACTGTTACATTCAGGTGTTTTTCTAGGTTAAGTCCTTTTTTTCTGCCTCTGTAATCTTGCAAGTATCAACAGtaatttttgtctttgtttatataaaatgattgaaGACTTGATTGTCATgactgcattaatattaaactatGTAA
>XM_026942518.2
CCAAAGCAGAGCGCAGTGAAGAACTTCTCCAAACTGAAGAGCAGACTGAAAAGAGACATGACCTTCCCCAGGATCCTGCTGCTTTTATTCCTTCCACTTCTTGGCATTGccaaAGCAGGGATGCTCAGTCCAGAAGCAGTGCAGGTTACTAATGTCCTTAAGGATGATGAAGCCTGCCAAGACTGTATCCAAATCATAGACATCCTGAAACACTTGCTATTGGATGAAGAGTTCCAGACGAAGCTGAAGAGCACTCTGGAGAAGGTGTGTGACTCGCTGCCTGCGCAGATTACGCAGCTGTGCCACAACGAGGTGGACAAAAACCTTCCTCTTGTCTTCACCTTCCTCACCGAACTGATGaACCCTAGACAAGTGTGCACTTACTTTAACCTGTGTGAAGGCGAGCTCAAGCTGCAGATGGAGGACATTTTGATGAATTACATAGAGAAGATCATCACACCCTCTACTGTCATGCTGGAGGCCTCGTTCCCATGCAGCGTTTGCACATATGCTTTGAATGTGCTGGACTGTCTCCTACCCACAGCACAGACAGAGAGTTTTGTGATCGGTGTGTTGGATGAAGTGTGTTCCCTCCTCCCCTTCCTCTTAAGAAGTCAGTGCTCACAGCTGGTTCAGAGATCAGTGAAAATGCTGCTTGAGGTGCTCCTGAACGCAGCATCGCCCAACTCCATCTGCTCTGTGTTCTGTCGCAGCTCAGCTCGACCCAGTAACATGGTGTCTCCTCTCTCGGACTGTGACTCGTGTCTGACTCTGGTCGTCCTGTCTCGTCTCCATTTGGGCTCGAACGCCACTCAGCCTCAGGTTACCTCCTTCCTGCGCTCCGTGTGCCAGTCGCACCCTGGCATCCTACCCAAGTGTGAGAGTTTTACTCAGCGCTATGGTGAGAAACTCCAGGGGATTCTGGGTAAAGAGGCAGTGGCTTTGGATGTGTGTGAGAGAGCTGATCTGTGTATGGGGATTAAGAGGACGGAGAAGGGAGACATTGGTGACCCCTGCACACTGGGGCCGAGCTACACCTGCCGAGATCTACAAACTGCTCACACCTGTGGGGTTGTCTCTTTCTGCCGGATGAACGTGTGGAAGTAGAAGTCTGTTCTCTGTTGGATTTCAGCTTCACAGCCGCTTCTCATCACAACATCAGCCACACAGAATCTAAACATGCAGTCTAAAAGGATTTTACAGAACTGTCCATGTTTGCTTTTCTAATCTGGGCTACGAGGTGAACCTGAGCTCTGACCTGCTATTGTTTAGACAAATACGATAAAGTGATAAGATAAAATCAGCCATCGAGGCAGTTTATTCTGACTCTTCAGCCATTATTAATTTAATGCTcatgatgtgttttttcttttgattaCTTTCACAACCAGCTTTTCTAAAAGTCAGCTGAACAAGATAAAATGATGGGCTTATGAACAAGCTGAGCCTTTTAAACTCTGGACACCACTGTTACATTCAGGTGTTTTTCTAGGTTAAGTCCTTTTTTTCTGCCTCTGTAATCTTGCAAGTATCAACAGtaatttttgtctttgtttatataaaatgattgaaGACTTGATTGTCATgactgcattaatattaaactatGTAA
>XM_034312335.1
CCAAAGCAGAGCGCAGTGAAGAACTTCTCCAAACTGAAGAGCAGACTGAAAAGAGACATGACCTTCCCCAGGATCCTGCTGCTTTTATTCCTTCCACTTCTTGGCATTGccaaAGCAGGGATGCTCAGTCCAGAAGCAGTGCAGGTTACTAATGTCCTTAAGGATGATGAAGCCTGCCAAGACTGTATCCAAATCATAGACATCCTGAAACACTTGCTATTGGATGAAGAGTTCCAGAATCAGGTTCAGACGAAGCTGAAGAGCACTCTGGAGAAGGTGTGTGACTCGCTGCCTGCGCAGATTACGCAGCTGTGCCACAACGAGGTGGACAAAAACCTTCCTCTTGTCTTCACCTTCCTCACCGAACTGATGaACCCTAGACAAGTGTGCACTTACTTTAACCTGTGTGAAGGCGAGCTCAAGCTGCAGATGGAGGACATTTTGATGAATTACATAGAGAAGATCATCACACCCTCTACTGTCATGCTGGAGGCCTCGTTCCCATGCAGCGTTTGCACATATGCTTTGAATGTGCTGGACTGTCTCCTACCCACAGCACAGACAGAGTGTGAGAGTTTTACTCAGCGCTATGGTGAGAAACTCCAGGGGATTCTGGGTAAAGAGGCAGTGGCTTTGGATGTGTGTGAGAGAGCTGATCTGTGTATGGGGATTAAGAGGACGGAGAAGGGAGACATTGGTGACCCCTGCACACTGGGGCCGAGCTACACCTGCCGAGATCTACAAACTGCTCACACCTGTGGGGTTGTCTCTTTCTGCCGGATGAACGTGTGGAAGTAGAAGTCTGTTCTCTGTTGGATTTCAGCTTCACAGCCGCTTCTCATCACAACATCAGCCACACAGAATCTAAACATGCAGTCTAAAAGGATTTTACAGAACTGTCCATGTTTGCTTTTCTAATCTGGGCTACGAGGTGAACCTGAGCTCTGACCTGCTATTGTTTAGACAAATACGATAAAGTGATAAGATAAAATCAGCCATCGAGGCAGTTTATTCTGACTCTTCAGCCATTATTAATTTAATGCTcatgatgtgttttttcttttgattaCTTTCACAACCAGCTTTTCTAAAAGTCAGCTGAACAAGATAAAATGATGGGCTTATGAACAAGCTGAGCCTTTTAAACTCTGGACACCACTGTTACATTCAGGTGTTTTTCTAGGTTAAGTCCTTTTTTTCTGCCTCTGTAATCTTGCAAGTATCAACAGtaatttttgtctttgtttatataaaatgattgaaGACTTGATTGTCATgactgcattaatattaaactatGTAA

Function

NR:

description
prosaposin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942517.2 True 1624 mRNA 0.46 13 20330486 20342383
XM_026942518.2 False 1612 mRNA 0.47 12 20330486 20342383
XM_034312335.1 False 1303 mRNA 0.44 11 20330486 20342383

Neighbor

gene id symbol gene type direction distance location
hvcn1 hvcn1 coding upstream 17229 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 115732 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 175683 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 206777 20117525 ~ 20123709 (+)
itga1 itga1 coding upstream 220185 20050618 ~ 20110301 (+)
mpx LOC100335032 coding downstream 266432 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 305424 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 320720 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 342589 20684972 ~ 20697663 (+)
pcyox1 pcyox1 coding downstream 360132 20702515 ~ 20711026 (+)
G272347 NA non-coding upstream 20610 20309591 ~ 20309876 (+)
G272305 NA non-coding upstream 90140 20239894 ~ 20240346 (+)
G272249 plpp1 non-coding upstream 103793 20223477 ~ 20226693 (+)
G272246 NA non-coding upstream 322289 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 505254 19817178 ~ 19825232 (+)
G272361 NA non-coding downstream 67340 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 100316 20442699 ~ 20447678 (+)
G272426 NA non-coding downstream 219793 20562176 ~ 20564064 (+)
G272427 NA non-coding downstream 222650 20565033 ~ 20660294 (+)
G272448 NA non-coding downstream 317220 20659603 ~ 20725194 (+)
gfra2b gfra2 other upstream 386981 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 481660 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 500218 19825962 ~ 19830268 (+)
G272180 NA other upstream 505254 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 543655 19782427 ~ 19786831 (+)
G272367 LOC108276637 other downstream 55897 20398280 ~ 20398947 (+)
G272374 NA other downstream 81016 20423399 ~ 20429143 (+)
G272408 NA other downstream 197942 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1017136 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1133704 21476087 ~ 21478880 (+)

Expression


Co-expression Network