urm1 (urm1)


Basic Information

Item Value
gene id urm1
gene name urm1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23624137 ~ 23640347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942519.2
AAATTTGTCACTTCCTGTGACGGAACTAACTACTTCCGGTTTGAAGAGCCTGTCATGGCGGCGCCCATAGCGATACATCTGGAGTTCGGAGGAGGAGCCGAACTCCTGTTTGATGGAGTCAAGGAGCACCATGTGACACttcccagccaatcagaacccTGGGACGTGAAGCAGCTGCTGGTGTGGATTCGGGAGAACCTGCTGAAGGAGAGGCCCGAGCTCTTTGTGCAGGGAGATTCTgtGAGACCCGGCATTCTCGTATTGATCAACGATGCAGACTGGGAACTGATGGGTGAGTTGGAGTACCAGCTTCAGGACCAGGACAATATCGTTTTCATCTCCACACTTCATGGAGGTTAACGGAttctaaaacatcacacacacacacacacacacacacacacacacatatacatacacaccataTATCCACGCCTTCGGTCTCGATGCTCTACGCTAcccatcctccatcctccagcCTCTCGACCAATCTGGCGAGCCAGTCTTgacttgttttgattttttagcCCAATTAAAGAGCACGTCGGTGGAGCGTGGGCTGAGACAGGATCGTCTCGGCGCTCTACCTGCCCCTCGGTTCGATGGATGGGGTCACATCGGGGCGCATTCAGAGGTCATTCCGTCTAGCCAACGTCCAGATGGATTCTCCAGAGACGTGCACCAATCACTCACACTCTCGCCTCAAGAAACGGAaaaatttccatttccatttgtttgtgtctggacatctttgttttttctctcgtttttgaataaataaatatgatttgctttttataattatatttctcaGATACttaaatggcatttttttttcgtTGTGGAAAAACTACTAGTTTTAATAAATGCCTCATTGATTTTGAGGTTCGTGAAAAAGTCAAA
>XM_034312337.1
AAATTTGTCACTTCCTGTGACGGAACTAACTACTTCCGGTTTGAAGAGCCTGTCATGGCGGCGCCCATAGCGATACATCTGGAGTTCGGAGGAGGAGCCGAACTCCTGTTTGATGGAGTCAAGGAGCACCATGTGACACttcccagccaatcagaacccTGGGACGTGAAGCAGCTGCTGGTGTGGATTCGGGAGAACCTGCTGAAGGAGAGGCCCGAGCTCTTTGTGCAGGGAGATTCTgtGAGACCCGGCATTCTCGTATTGATCAACGATGCAGACTGGGAACTGATGagtctagGGTGAGTTGGAGTACCAGCTTCAGGACCAGGACAATATCGTTTTCATCTCCACACTTCATGGAGGTTAACGGAttctaaaacatcacacacacacacacacacacacacacacacacatatacatacacaccataTATCCACGCCTTCGGTCTCGATGCTCTACGCTAcccatcctccatcctccagcCTCTCGACCAATCTGGCGAGCCAGTCTTgacttgttttgattttttagcCCAATTAAAGAGCACGTCGGTGGAGCGTGGGCTGAGACAGGATCGTCTCGGCGCTCTACCTGCCCCTCGGTTCGATGGATGGGGTCACATCGGGGCGCATTCAGAGGTCATTCCGTCTAGCCAACGTCCAGATGGATTCTCCAGAGACGTGCACCAATCACTCACACTCTCGCCTCAAGAAACGGAaaaatttccatttccatttgtttgtgtctggacatctttgttttttctctcgtttttgaataaataaatatgatttgctttttataattatatttctcaGATACttaaatggcatttttttttcgtTGTGGAAAAACTACTAGTTTTAATAAATGCCTCATTGATTTTGAGGTTCGTGAAAAAGTCAAA

Function

symbol description
urm1 Predicted to enable protein tag. Predicted to be involved in protein urmylation. Predicted to act upstream of or within tRNA thio-modification. Predicted to be located in cytosol. Predicted to be active in nucleus. Orthologous to human URM1 (ubiquitin related modifier 1).

NR:

description
ubiquitin-related modifier 1 isoform X2

GO: NA

KEGG:

id description
K12161 URM1; ubiquitin related modifier 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942519.2 False 903 mRNA 0.47 5 23624137 23640347
XM_034312337.1 True 910 mRNA 0.47 5 23624137 23640347

Neighbor

gene id symbol gene type direction distance location
sh2d3ca sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235 coding upstream 5616 23566714 ~ 23618521 (+)
LOC113543956 gpr21,LOC108433543,LOC107686419,LOC101884949,LOC107744074,LOC107597614,LOC107595548 coding upstream 278329 23342796 ~ 23345808 (+)
si:ch211-243g18.2 LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290 coding upstream 392102 23220145 ~ 23232035 (+)
ndufa8 ndufa8,LOC107686420 coding upstream 454620 23163709 ~ 23169517 (+)
rbm18 rbm18,LOC107686423 coding upstream 502430 23104677 ~ 23121707 (+)
cercam cercam,LOC107744239,LOC107597609,LOC107685123 coding downstream 22272 23662619 ~ 23676630 (+)
sardh sardh coding downstream 43203 23683550 ~ 23721518 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding downstream 114770 23755117 ~ 23777033 (+)
swi5 swi5 coding downstream 141009 23781356 ~ 23786783 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding downstream 149085 23789432 ~ 23809829 (+)
G273900 NA non-coding upstream 225606 23396808 ~ 23398531 (+)
G273880 NA non-coding upstream 290588 23286000 ~ 23333549 (+)
G273865 NA non-coding upstream 344348 23261046 ~ 23279789 (+)
G273719 NA non-coding upstream 488305 23135579 ~ 23135832 (+)
LOC117599346 NA non-coding upstream 550199 23068937 ~ 23073938 (+)
G274161 NA non-coding downstream 35296 23675643 ~ 23677227 (+)
G274186 NA non-coding downstream 211650 23851997 ~ 23852218 (+)
G274192 NA non-coding downstream 219477 23859824 ~ 23860703 (+)
G274193 NA non-coding downstream 228507 23868854 ~ 23869197 (+)
G274239 NA non-coding downstream 305269 23945616 ~ 23946507 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 238030 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 349484 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 478570 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 958567 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 1249262 22369256 ~ 22374875 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 297631 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 462726 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 585807 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 840252 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 889631 24529978 ~ 24639642 (+)

Expression


Co-expression Network