snx18b (LOC108276851)


Basic Information

Item Value
gene id snx18b
gene name LOC108276851
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22948893 ~ 22957601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942550.2
GCCATAGACCGCAAACTGCGGGAGGAGGAGGCAGGGAAATAACAAAACTGTCCGGAAAGTAACTTTAAACTCTTTATCATGTTAAAATAGTGCAGTCGCTATCATTTCGAGGCACTTTTGTGGACTTTAAGACTCGCAGAAGTTTTGAAGACGGAACTTTGGCAGctgcgtcttttttttttttccagaaaccccacaaaaaaaaaaacgacctAAAAAACGATGGCGCTCAGAGCGAGAGCTTTATACGACTTTGTTTCTGAAAATCCCGGCGAGATTTCTGTGGTGGAAAACGAGATTTTGACTTTATACAGTGAGGATGTGGTGGACGGCTGGTTCGAGGGCACAAACAGCCGCGGAGAGTCGGGACTCTTCCCCGCGTCGTACGTGGAGATCTTAAGGACTGAAGAAGGATTTTCAGTGCAGGGAAACGGGACTGCTGGAAACATCTACAACCCCACAACCGGAAGTGAGTACGCCTACCAAGTGAGAGGGGACCTTTCAAGCGAGTCCACCCCTCAGAGACACGGTTACCCGACAAGCCAAGGCAGCGATGACGACTGGGACGACGACTGGGACGACAACCCGACGACGACAACGACGACAACTCACGACCCGAGCGTCCgtcaacacaaacaccaacccAGTCGCGCCAACTCGGTGTCTTCACGCGGCAGCGGTGGCCCACAAGCCCGAAGCTCAGCAACGGTTGGGAAAAACCTTAACAGGTTTTCTACCTTCGTGAAATCCGGAGGCGAGGCGTTTGTTTTGGGCGAGGCGTCCGGATTGGTCAGGGACTGTGATCAAATCTGCGTGGTCATGGGTCAGTTCGGTCCCGAGTGGCAAGAGAACCCACATCCTTTCACGTGCACCATCGATGATCCGACCAAACAGACCAAATTCAAAGGGATGAAGAGTTACATGTCGTACGGCCTCATGCCCAGCCACACGCAAATCCCCGTGAACCGGCGCTACAAGCATTTTGACTGGCTGTACGCACGCCTCGTGGAACGCTTCCCAGTCATCTCCGTTCCCCACCTTCCCGAGAAGCAGGCCACGGGTCGCTTCGAGGAGGACTTCATTTGCAAGCGCAGGAAGGGTCTGATCTGGTGGATGAACCACATGACGAGCCACCCGGTTTTATCCAGGTGCGACGTCTTTCAGCACTTCCTGACCTGCAGCAGCAGCGACGAGAAAGCCTGGAAGCAGGGCAAGCGCAAGGCTGAGAAAGATCACCTGGTGGGCGCCAACTTCTTCCTCACCATCGTCCCGCCGGCTGCTCCGCTCGACCTCCAGGAGGTGGAAAGCAAAGTGGACGGCTTCAAGACGTTCACCAAAAAGATGGACGAGAACATTGTGCAAGTCAACGTGACCATCGGCGAGTTCTCCAGGAAGCAGATGACTGGATTTAAAAAGGAGTATCATAAAGTTGGACAGGCCTTTCGGTTGCTCGGGCAGGCCTTCGAACTGGACCAGCAGGTGTATTCGGTCAAGCTGAACCAAGCGATGGCGTTCACTGGGGCCGCCTACGAGACCATCGGGGACTACTTTGCCGAACAACCTCGCCAGGATCTGGATCCGGTGTCGGATCTTTTAGCGATTTACCAGGGACATCTAGCAAACTTCCCAGACATCATCCACGTTCAGAAAGGAGCTCTGACCAAAGCGAAGGAGAGCCAGAAGGACAAAGACGTCCCGGCGGCGCACGACATCCACGAGCGCTGCAACATCATTTCCTGTGCCACGCTGGCCGAGATCCAGCACTTCCACCGCACCCGAGTACGCGACTTCAAGGCCCAGATGCAGCACTACCTCCAGCAGCAGATCTCCTTCTTCCAGAGGATCACAGCCAAACTGGAGGAAGCGCTGCACATGTACGAGCAGGCTTAAAAAAGAAACGGACAGGAACCCTTCAACTCCGCAATCCTGAAAGAATGTGTACAATCAGGAAATTTTAATAGACATTCACGTCTCTTAAACAGGAAAGAGTAGGAACACGTGCAGGACGTAATATTTAGACACAAATCAAAACAGGCCTGAAAAATGCAGCAGGTCTCACtcttattttccattttgtaacacaaacaataaagacatgctttttttttttgcttgttttttttcatttttcttttttttaatatgggtATTTAGTGTTCCTGAAATCTGAAATCGGAATAATTTACTGAGTCATAACATCAAGCAAAActtaatatcaatatcaaataATAGTGcagaattataaataatataaataatacaaaatttgCAATTCTGAATATccacatattaaaatatttttgttggtAAATTTATATTAGACATACCATACATGATGGTCCTGAAGTTATAAGGGCAGctacttaaaaaatatttaataataataataataataataataataataatttttggttttttttgttttgttctgggatttttttgtaATACAAATTTACTTAGTGTTCAATAAATCTAAATTCAGAATAATTACAGAGTAATAACATCaagcaaaaaaagtttttaatattcacatccaaataagaaaaaaatatataaataataatgctatttattttattataattgtgttttttaacatttaaggtTACTGACAAAAAGTTTTTAATTAAGATTTTATTTCGTGgatattcagatttatttgtaatgtgcACATGTGTACAGTCTTTGaaagcattttttaattcagtaaCGTTTATGATCTAACCACATTTGGTTTCCATTAAGCAGAAACCGAAAAACTAAACGTGCATTTACACTTTAAACCGTTTTAACCCATCAGGGAAACGCAGGACTCGTCAGCATGAACCCTCGTAACCCATTTCCTGTATCTTTGTATCTTTACAGCGGGACGTTTTCTCACCCTGCTTTTGGCTTTTggacaataatttttttctaacagcTGGAATTTGTGCCTTAGTTCAATTCCCATCTTTTTTCctgagtcatttttaaatacagatcTGTATTTATGAATCTCA

Function

NR:

description
PREDICTED: sorting nexin-18-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942550.2 True 3002 mRNA 0.45 2 22948893 22957601

Neighbor

gene id symbol gene type direction distance location
fstb LOC108276855,LOC108433530 coding upstream 85063 22852481 ~ 22863830 (+)
itga2.2 itga2 coding upstream 111275 22792578 ~ 22837618 (+)
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding upstream 168606 22767226 ~ 22780287 (+)
vsig8a LOC108277295 coding upstream 182618 22706961 ~ 22766275 (+)
igsf9a LOC108277156 coding upstream 522072 22379920 ~ 22426821 (+)
rasgef1bb LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538 coding downstream 47403 23005004 ~ 23016226 (+)
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding downstream 62327 23019928 ~ 23039549 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding downstream 82865 23040466 ~ 23045078 (+)
rbm18 rbm18,LOC107686423 coding downstream 147076 23104677 ~ 23121707 (+)
ndufa8 ndufa8,LOC107686420 coding downstream 206108 23163709 ~ 23169517 (+)
G273600 NA non-coding upstream 108773 22801081 ~ 22840120 (+)
G273473 NA non-coding upstream 386568 22562104 ~ 22562325 (+)
G273226 NA non-coding upstream 910744 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 966702 21981979 ~ 21982191 (+)
G273248 NA non-coding upstream 986026 21962664 ~ 21962867 (+)
LOC117599377 NA non-coding downstream 34941 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 79808 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 90320 23047921 ~ 23062345 (+)
LOC117599346 NA non-coding downstream 111336 23068937 ~ 23073938 (+)
G273719 NA non-coding downstream 177978 23135579 ~ 23135832 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 283323 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 574018 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 914896 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1470013 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 1587149 21359519 ~ 21361744 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 92211 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 286959 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 323960 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 980377 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 1145472 24103073 ~ 24112853 (+)

Expression


Co-expression Network