mtrex (skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870)


Basic Information

Item Value
gene id mtrex
gene name skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20182654 ~ 20214754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942552.2
ATGGCGGACGTCTTCGGAGACGATTTATTTAGCGTTTTTGACGAGGAACAGGCGACTTCTAGTAAAAAGACAAGCTCAAAGACCGAGTCTCGTGTCGGgaAAACAGCTGGCACACATGgcagagaaaagacagaatCTCCGTCTGGGGCAAAGACGGAACGAGAGGCAGAGAACGATGGCACTGATGAGGTTTCGTACGGAAAAAAGCCCAAACTGGATACGGTGTTATCAGAGGAGATCAATCTTGCAGACTTGATGCCTAAAGTCAAAGTGGAGCAGGTTGAGACGGTGGAGGGCTGCACACATGAGGTGGCGTTGCCTGCAGATCAGCAATACACTCCACTGAAGCCACGAGTAGGAAAAGCAGCCAAGGAGTACCCGTTCCTTCTCGACCCATTTCAGCGCGAGGCCATTCTGTGCATCGACAACAACCAATCCGTCCTCGTCTCCGCTCACACCTCAGCCGGGAAAACCGTGTGTGCCGAaTATGCTATTGCTCTGGCTCTGAGGGAGAAGCAGCGAGTGATCTTCACCAGCCCCATTAAAGCTCTGAGTAatcagaaatacagagagatgTACGAGGAGTTCCAGGATGTGGGACTGATGACTGGAGACGTGACGATTAACCCCACTGCCTCCTGCCTCGTCATGACCACTGAGattttGAGGAGCATGCTGTACcgggggtcagaggtcatgcgTGAGGTGGCCTGGGTCATATTTGACGAGATCCATTACATGAGGGACTCGGagcGTGGTGTGGTATGGGAGGAGACCATCATCCTTCTTCCCGATAACGTACATTACGTCTTCCTGTCGGCCACCATCCCCAACGCACGGCAGTTCGCTGAGTGGATCTGTCACCTGCACACACAGCCTTGCCACGTGGTGTACACAGACTACCGACCCACTCCGCTGCAGCACTACATCTTTCCAGCAGGAGGTGACGGACTTCACTTGGTCGTGGATGAGAATGGTGAGTTCAGGGAGGATAACTTCAACACAGCCATGCAGGTTCTCCGGGACGCTGGAGACTCCGGAGcgagtggaggaggaggaaaatgGGACCCTAAAGGAAGAAGAGGCGGGACCAAGGgtcCATCCAATGTGTTTAAGATAGTGAAGATGATCATGGAGAGGAACTTCCAGCCCGTCATCATCTTCAGCTTCAGTAAGAAGGAGTGTGAGGCGTACGCTCTGCAGGTGTCCAAACTCGACTTCAATACAGATGAAGAGAAGAAACTGGTGGAGGAGGTATTCAGCAACGCCATCGACTGTCTGTCAGATGAGGATAAAAAGCTGCCCCAGgtggaGCATGTTCTCCCTCTGTTGAAGAGAGGAATCGGGATCCATCATGGCGGACTGTTGCCCATCCTGAAAGAGGCCATCGAGATTCTCTTCTCTGAGGGACTACTGAAGGCCTTGTTTGCAACAGAGACATTTGCCATGGGAATCAACATGCCTGCTCGCACCGTGCTCTTCACCAGCGCTCGCAAGTTCGACGGCAAAGACTTCCGctggATCAGCTCAGGAGAGTACATCCAGATGTCAGGCCGAGCCGGGAGGAGAGGGATGGACGAGAGAGGAATCGTCATCTTTATGGTGGATGAGAAGATGAGTCCAGCTGTGGGGAAGCAGCTCTTAAAGGGTTCTGCTGACCCTCTGAACAGTGCCTTCCACCTCACATATAACATGGTCCTGAACTTGCTGCGTGTGGAGGAGATTAACCCCGAGTACATGCTGGAGAAGTCCTTCTACCAGTTCCAGCACTACAGAGCTGTCCCTGGTGTAATCGAgaAGATGCAGAAGCTGGAGGAGATGTACAACAGCATCGAGATCCCCAATGAGGACAGCGTGGTCACTTACTATAAAATCCGCCAGCAGTTAGCCAAGCTGGCCAAAGAGATCGAAGAATACGTACATAAACCCAAATACTGCCTGCCTTTCCTACAGCCTGGCCGCCTAGTCAagGTGAAAAAGGACGATTTGGATTTTGGCTGGGGCATCATTGTTAACTTCTCCAAGAAGTCAAACGTCAAGgccaGTACTGGTGATCTGGATCCTCTGTATGTTGTGGAAGTTTTATTAAACTGCAGTAAGGAAAGTGTGAAAAACGCTGCAACGGAGGCAGCCAAACCAGCAGCacagggagagaaaggagagatgCAGgTGGTGCCCGTCATGCTGAATCTCCTCACCTCCATCAGTTCAGTGCGGCTCTACATCCCCAAAGACCTGCGGCCCTACGACAACCGACAGAGCATGCTTAAATCCATacaggaGGTGCAGAAACGTTTCCCTGATGGTCTCCCTCTGTTAGACCCCATCGATGATATGGGCATTACAGACTCAGGGCTGAAGAAGGTCATCCAGAAGGTGGAGGCCTTTGAGCACAGGATGTACACACACCCACTCCACACTGACCCCAGCCTCGGGACTGTCTACACACTCTGTGAGAAGAAAGCAGTGattGCGGGTGATATCAAGGCAGCAAAGCGGGAGTTGAAGAAAGCCCGCACCGTGCTGCAGATGGACGAGCTGAAGTGTCGGAAGCGCGTGCTGCGACGCCTTGGGTTTGCCACCTCCTCCGATGTCATCGAGATGAAGGGGCGGGTCGCCTGTGAGATCAGCAGtgCGGACGAGCTGCTCCTGACCGAGATGATGTTTAACGGTCTCTTTAACGATCTGACTGCTGAACAGGCGACAGCCTTACTGAGCTGCTTTGTCTTCCAGGAAAATgctAATGAGATGCCTAAACTTACAGAGCAGTTAGCAGGTCCACTCCGACAGATGCAGGAATGTGCCAAGCGCATCGCTAAAGTCTCAGCCGAGGCAAAGCTGGACGTAGATGAGGACGCCTACTTGAACCAGTTCCGTCCTCACCTCATGGACGTAGTGTACACTTGGGCCAACGGAGCCTCCTTCTCTCAGATCTGCAAAATGACGGATGTTTTCGAAGGCAGCATTATTCGCTGCATGAGGCGCCTGGAGGAGCTTCTGAGGCAGATGTGCCAAGCGGCCAAGGCCATCGGGAACACAGAGCTGGAGAACAAGTTCGCTCTCGGCATCACGAAGATCAAGCGTGACATTGTGTTTGCTGCCAGTCTTTACCTGTGAGGGACGAAGCTGCTGTTTACCAAATTCCTTCCCTTCCTTCCCtttatcatttctgtttgtttctttcatttttcataaagACAACGTGAAGACGGTGATGACGGAATATGTTTATTAACgttcttctttcttttgccTTCATACAGCACAATGCGTTTTTTTGTACATAGTgttttaacataattttaattaaaaaagtgtatagcga

Function

symbol description
skiv2l2 ATP-dependent RNA helicase DOB1

NR:

description
superkiller viralicidic activity 2-like 2

GO:

id name namespace
GO:0051781 positive regulation of cell division biological_process
GO:0031101 fin regeneration biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12598 MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942552.2 True 3325 mRNA 0.51 27 20182654 20214754

Neighbor

gene id symbol gene type direction distance location
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 27851 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 58945 20117525 ~ 20123709 (+)
itga1 itga1 coding upstream 72353 20050618 ~ 20110301 (+)
LOC113543999 LOC108277114 coding upstream 158940 20018366 ~ 20023714 (+)
LOC117595711 NA coding upstream 376859 19792704 ~ 19805795 (+)
hvcn1 hvcn1 coding downstream 88976 20303730 ~ 20313257 (+)
sftpba LOC108276523 coding downstream 115732 20330486 ~ 20342383 (+)
mpx LOC100335032 coding downstream 394061 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 433053 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 448349 20663103 ~ 20670487 (+)
G272246 NA non-coding upstream 174457 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 357422 19817178 ~ 19825232 (+)
G271923 NA non-coding upstream 697750 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 846774 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 953231 19229061 ~ 19229423 (+)
G272249 plpp1 non-coding downstream 8723 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 25140 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 94837 20309591 ~ 20309876 (+)
G272361 NA non-coding downstream 194969 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 227945 20442699 ~ 20447678 (+)
gfra2b gfra2 other upstream 239149 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 333828 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 352386 19825962 ~ 19830268 (+)
G272180 NA other upstream 357422 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 395823 19782427 ~ 19786831 (+)
G272367 LOC108276637 other downstream 183526 20398280 ~ 20398947 (+)
G272374 NA other downstream 208645 20423399 ~ 20429143 (+)
G272408 NA other downstream 325571 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1144765 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1261333 21476087 ~ 21478880 (+)

Expression


Co-expression Network