LOC113543999 (LOC108277114)


Basic Information

Item Value
gene id LOC113543999
gene name LOC108277114
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20018366 ~ 20023714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942564.2
AGCGCTGCTGAAAAGGGCACAGGACCAAAAAGTGCAGTCGTGAGGATGCTGAGAGGTGATTCACGGTCGGAACGGATACTCTAACATTTACCCTAAAAAATGGAAGAGCCACAAAAAGCAGAAAAAGGCCTCCCTTCACTCTGCGTTGGTTGTGGGCTTCAGATCCGCGACCGCTTCGTGTTGAGGGTGTTTCCTGACCTGCGTTGGCACATAGCGTGTCTGAAGTGTGTGGAGTGTCAGCAAAACCTAGACGAGTCTCACACCTGCTTCATTAAAGACGGAAAGACCCTGTGTAAAGATGATTATAtcagATTATACACCAccaaatgtgcaaaatgtcTAAAGTCAATCAGCAGCCGTGATTACGTCATGCGTGCAGGAGATAACGTCTATCACGTGCAGTGCTTCCGGTGTGAGCACTGCGATCGGCAGCTGCTGCCCGGAGATGAGTTTACCATCCAAGACGGCTTCCTGCACTGCACTGGTCGTGAAAACACCAATCACAGACTAATAACACTTACACATGACTCAGCACATCTGACTGACCTGGACAGGTGTGATGAAGGAGCAGACACTTCCCAGTCGGGTGGAGAAGGTGATTCTGGCTGGCCGGTTGTGCCCATCAAGCCTGAGAAGACTGCACGTGTGAGGACAGCACTCAGCCCGTCTCAGCTCCATGTGCTGCGCACATGCTACAACGCTAACCCGCGACCGGACGCTACAGTGAAGGAACAGCTGATGGAGCTGACGGGCTTGAGCTCGCGTGTCATCCGCATCTGGTTCCAGAACAAACGATGCAAAGACAAGAAAAAGAGCATGCTGGAGAGACAAATGCAGCACAAGAGCGGAGAACAGACCGATACGACAGATGAGCCGTTGTTGGCTGTCACTCCTGAGAACCTGGACTTAGACACACTGATGCACCCACTGGACCTGCAGAGTCTCCAGCCATCTTGGAAGCTCCTGACGAGTCTCTTGTTTTCAGACAGTGATCAGGAAACAGTGACTCTCAACCAGCTAGATTAGCCCTAATGTTCACCGCTAAGTAGTGAACACTACAGGAGAGTTAAGTGCATAAGAAGGATGGAAAGGTGTACTagtgtttttttgtgattttcatGAGTTTATATCAGACAGTAATATGAGCATTTATTCTACAGAAACTGATATTGTGTTAAAATCCATCGAGCCACAAAATACAAACTTAAATGCCATTCCATCAGAGGAGGAGACATGAACTTCATTTTTCTTGGGTTGATAAAGACTTGGAGTGTGACCACTGATCCAGGcgacagttttaaaaatgaagtgtTATTCGTGAAAAGGGCAGCATTTCTGTAACAAAGTCTCTCAATTAAATCAAGCTACTGTGTGacaatgtttattaaatgtgcTACACAAAGTTAAAATCGTATCGTAAATAATGCTGTTAAAATGTCTTACGAAATATTGCCACTTATGTACCAATCATTTAGTaaagttttgtgtaaatgtcttagtaagccaaactgaacttAAAATGACAGTCAGATTTGCTTCACAGTCATGTGCATACAGTATGTTGATAAACTTTAATCAGCCATAAATTATCTAGCGCGTTcacggcacagctgatttacatttagtgatgcTCACAAACCTGCCtaaaagactgaaagagagagcgGAAAATGACAACAGAATGGTAAAATTCACAACATGTGCTAAATATTCCAGTGATGCAGCTCAGTGGCCTTTCTACTTTTATAGGGTGctattacttttgtcctaattaaATGGCTAGTTTATGTGTCTTAATTTAAGGAattgttttggattgctttcttggTAAACCGACTGAGTTTCacagaatattttttgttaaatttgtgtgaaataaataagtgatttaaatcC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942564.2 True 1896 mRNA 0.44 5 20018366 20023714

Neighbor

gene id symbol gene type direction distance location
LOC117595711 NA coding upstream 212571 19792704 ~ 19805795 (+)
LOC113544133 NA coding upstream 217848 19797773 ~ 19800518 (+)
LOC113543930 NA coding upstream 353042 19649463 ~ 19665324 (+)
LOC113544003 NA coding upstream 469172 19540378 ~ 19549194 (+)
LOC117599386 NA coding upstream 478090 19530877 ~ 19540276 (+)
itga1 itga1 coding downstream 26904 20050618 ~ 20110301 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding downstream 93811 20117525 ~ 20123709 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding downstream 101821 20125535 ~ 20154803 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding downstream 158940 20182654 ~ 20214754 (+)
hvcn1 hvcn1 coding downstream 280016 20303730 ~ 20313257 (+)
G272246 NA non-coding upstream 10169 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 193134 19817178 ~ 19825232 (+)
G271923 NA non-coding upstream 533462 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 682486 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 788943 19229061 ~ 19229423 (+)
G272249 plpp1 non-coding downstream 199763 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 216180 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 285877 20309591 ~ 20309876 (+)
G272361 NA non-coding downstream 386009 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 418985 20442699 ~ 20447678 (+)
gfra2b gfra2 other upstream 74861 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 169540 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 188098 19825962 ~ 19830268 (+)
G272180 NA other upstream 193134 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 231535 19782427 ~ 19786831 (+)
G272367 LOC108276637 other downstream 374566 20398280 ~ 20398947 (+)
G272374 NA other downstream 399685 20423399 ~ 20429143 (+)
G272408 NA other downstream 516611 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1335805 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1452373 21476087 ~ 21478880 (+)

Expression


Co-expression Network