lpar1 (lpar1,LOC107554848,LOC107723319)


Basic Information

Item Value
gene id lpar1
gene name lpar1,LOC107554848,LOC107723319
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 17665665 ~ 17688996 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942578.2
GCGCTCCCGACTGCGGCGCTTTTTTCTTGCTGCGTAAATCTAACGGAAAGGTGGATCACTATTCCAGTCGCGTCTCACGCGCGTTATTTCCGTGGATGTAAAATGAACATACAACACAGTTGTGGACTTTACGACGCAAAACCTTCCTTCAGTCCTtgatatttcttcttcttttcttcttctttttattggAAGAAACGGACCTCGACTGATCTTGCTGGGACAAACTTTTGGAGCTACTCACATAATCAAACGGCTCATTTTCTGGAAGTGTTCCAGCTaagtATAACCTTCAAGATGGATGGACAGTGTTACTACAATGAAAGCATTGCCTTCTTTTACAATGAAAGTGGGAAGTACCTGGCCACAGAGTGGAATACTGTCAGCAGACTGGTGATGGGACTTGGGCTTACAGTATGTATCTTTATCATGCTGGCTAACCTGCTGGTGATGGTGGCCATCTACATCAACCGCAGATTTCATTTTCCCATCTATTATCTCATGGCTAACCTAGCGGCAGCAGACTTTTTCGCTGGACTGGCTTATTTCTATTTGATGTTTAACACGGGGCCCAACACCCGCAGGCTAACTGTTAGCACATGGTTACTACGCCAAGGCCTCATTGACACTAGCCTGACGGCCTCTGTGGCCAACTTACTAGCCATCGCCATCGAGCGCCACATAACAGTCTTCCGCATGCAGCTCCACACGCGCATGAGTAACCGACGTGTGGTTGTGGTCATTGTGATCATCTGGACTATGTCAATTGTCATGGGTGCCATCCCTAGCGTGGGCTGGAACTGTATCTGTGCCATCAAAACCTGCTCCAACATGGCACCACTCTACAGCAACTCGTACCTCGTCTTCTGGGCCATCTTCAACCTGGTGACCTTTGTGGTCATGGTGGTGCTTTATGCCCACATATTCATGTATGTCCGCCAGCGCACCATGAGAATGTCTCGCCATAGCTCAGGTCAGCGGCGCAACAGGGATACCATGATGAGCTTGCTGAAGACAGTGGTGATTGTCCTTGGTGCTTTTATCGTGTGCTGGACGCCTGGTTTAGTTCTCCTACTGCTTGACGTTTTCTGCGAAGAATGCAACGTGCTGGCTTTCGAGAAGTTCTTCCTCCTCTTAGCCGAGTTTAACTCAGCCATGAACCCAATCATCTACTCCTACCGGGACAAGGAGATGAGCGTTACGTTCAAGCAGATCCTGTGCTGCCAGCGGCAGGAGAACATAAACGGTACTGTGGAGGGTTCAGACCGCTCAGCTTCCTCCCTCAACCACACTGTCCTGTCTCCACACAATAATGACCACTCAGTGGTCTGAACACAGCAGAGGAACGCAGCTGGCACTATcgggatcaaacccaggactgGAAAAAAGCTCCTTGCCAAGTGGCAGAGCTACACAGGAGGCATTTGCattacccaaaaaaaaa
>XM_034312272.1
GCGCTCCCGACTGCGGCGCTTTTTTCTTGCTGCGTAAATCTAACGGAAAGGTGGATCACTATTCCAGTCGCGTCTCACGCGCGTTATTTCCGTGGATGTAAAATGAACATACAACACAGTTGTGGACTTTACGACGCAAAACCTTCCTTCAGTCCTtgatatttcttcttcttttcttcttctttttattggAAGAAACGGACCTCGACTGATCTTGCTGGGACAAACTTTTGGAGCTACTCACATAATCAAACGGCTCATTTTCTGGAAGTGTTCCAGCTtATAACCTTCAAGATGGATGGACAGTGTTACTACAATGAAAGCATTGCCTTCTTTTACAATGAAAGTGGGAAGTACCTGGCCACAGAGTGGAATACTGTCAGCAGACTGGTGATGGGACTTGGGCTTACAGTATGTATCTTTATCATGCTGGCTAACCTGCTGGTGATGGTGGCCATCTACATCAACCGCAGATTTCATTTTCCCATCTATTATCTCATGGCTAACCTAGCGGCAGCAGACTTTTTCGCTGGACTGGCTTATTTCTATTTGATGTTTAACACGGGGCCCAACACCCGCAGGCTAACTGTTAGCACATGGTTACTACGCCAAGGCCTCATTGACACTAGCCTGACGGCCTCTGTGGCCAACTTACTAGCCATCGCCATCGAGCGCCACATAACAGTCTTCCGCATGCAGCTCCACACGCGCATGAGTAACCGACGTGTGGTTGTGGTCATTGTGATCATCTGGACTATGTCAATTGTCATGGGTGCCATCCCTAGCGTGGGCTGGAACTGTATCTGTGCCATCAAAACCTGCTCCAACATGGCACCACTCTACAGCAACTCGTACCTCGTCTTCTGGGCCATCTTCAACCTGGTGACCTTTGTGGTCATGGTGGTGCTTTATGCCCACATATTCATGTATGTCCGCCAGCGCACCATGAGAATGTCTCGCCATAGCTCAGGTCAGCGGCGCAACAGGGATACCATGATGAGCTTGCTGAAGACAGTGGTGATTGTCCTTGGTGCTTTTATCGTGTGCTGGACGCCTGGTTTAGTTCTCCTACTGCTTGACGTTTTCTGCGAAGAATGCAACGTGCTGGCTTTCGAGAAGTTCTTCCTCCTCTTAGCCGAGTTTAACTCAGCCATGAACCCAATCATCTACTCCTACCGGGACAAGGAGATGAGCGTTACGTTCAAGCAGATCCTGTGCTGCCAGCGGCAGGAGAACATAAACGGTACTGTGGAGGGTTCAGACCGCTCAGCTTCCTCCCTCAACCACACTGTCCTGTCTCCACACAATAATGACCACTCAGTGGTCTGAACACAGCAGAGGAACGCAGCTGGCACTATcgggatcaaacccaggactgGAAAAAAGCTCCTTGCCAAGTGGCAGAGCTACACAGGAGGCATTTGCattacccaaaaaaaaa

Function

symbol description
lpar1 Enables lysophosphatidic acid receptor activity. Acts upstream of or within cartilage development; hemangioblast cell differentiation; and vasculature development. Predicted to be located in cell surface; endosome; and membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human LPAR1 (lysophosphatidic acid receptor 1).

NR:

description
lysophosphatidic acid receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0070915 lysophosphatidic acid receptor activity molecular_function

KEGG:

id description
K04289 LPAR1, EDG2; lysophosphatidic acid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942578.2 True 1444 mRNA 0.49 3 17665665 17688996
XM_034312272.1 False 1441 mRNA 0.49 3 17665665 17688996

Neighbor

gene id symbol gene type direction distance location
LOC113544058 epha5,LOC108428864,LOC107702602 coding upstream 56080 17552931 ~ 17609585 (+)
plppr1 plppr1,LOC107702599,LOC107653496,LOC107710008,LOC107750956,LOC102776600,LOC106568589 coding upstream 268848 17355099 ~ 17396817 (+)
snx30 snx30,LOC107569385 coding upstream 453542 17189955 ~ 17212123 (+)
enoph1 enoph1,LOC107679042,LOC107702573,LOC107715850 coding upstream 542095 17114025 ~ 17123570 (+)
syk syk coding upstream 772766 16828162 ~ 16892899 (+)
rassf6 rassf6 coding downstream 39622 17728618 ~ 17743596 (+)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107554852 coding downstream 62582 17751578 ~ 17758223 (+)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding downstream 526587 18215583 ~ 18218914 (+)
katnal2 katnal2,LOC107573073,LOC102797751 coding downstream 531772 18220768 ~ 18231104 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 546373 18235369 ~ 18240105 (+)
G270913 NA non-coding upstream 276686 17361945 ~ 17388979 (+)
G270893 NA non-coding upstream 372782 17277656 ~ 17292883 (+)
G270873 scd5 non-coding upstream 516246 17136712 ~ 17149419 (+)
G270872 NA non-coding upstream 525092 17129692 ~ 17140573 (+)
G270870 NA non-coding upstream 526684 17128017 ~ 17138981 (+)
G271076 NA non-coding downstream 660 17689656 ~ 17690861 (+)
G271102 NA non-coding downstream 70554 17759550 ~ 17764529 (+)
G271104 NA non-coding downstream 80773 17769769 ~ 17773380 (+)
G271235 NA non-coding downstream 435826 18124822 ~ 18125792 (+)
G271340 NA non-coding downstream 609126 18298122 ~ 18348384 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 564596 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 576287 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 576366 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 577065 17088529 ~ 17088600 (+)
trnar-ccu_12 NA other upstream 577144 17088449 ~ 17088521 (+)
G271406 NA other downstream 715273 18404269 ~ 18407498 (+)
G271863 NA other downstream 1552713 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 1687096 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 1800210 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 2093431 19782427 ~ 19786831 (+)

Expression


Co-expression Network