dpysl2b (dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521)


Basic Information

Item Value
gene id dpysl2b
gene name dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22315294 ~ 22351716 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942647.2
GTTAACGCAAACTTTCCCCGCGTTCATCCCTGGATTTTAGGAGCATTGTGTCATAATCCTCTCCAGATGTGCGATGTGTGATCTCCGGTGATCTGGTGGAGCTCAATCACGCAATCGCGCGCGCTCGTGGGGATCGGCCACGGTGGTCAGACAGAGCAAAACAAAAGGAGCTGCACGATAAATCAATCCGGAGGAAGTGGAGATCAGAAGCTTGGACGCGTCCGAGACTGCGTGAAAGCGCAGCACTTCCGGATAAGAAGCTGTGCGTGACATCTCCCGCAGCTCCCCGGCGCATCCTGATCAGATCTGATTGCACGTCCTGAAACCCCAGAGTCTCCACTTCACCATGTCCATGTTGAGAGACGGAGCCGATGTGTCCAGGAGCTCCCCGACTCCCAGGCTGTGTGGAGTGCTGTGTCCGCTCGACTCGCTGTGGACCGACGCGAAGAAGACGGAGGGACAGCAGCGGAGCTCCAGCACCGACAACAGGAAGGTGGAGATCCGCAGGAGCGCTGGCAAAGAGCTGCTGCAGAACCTCAATGACCAGAGTGAGCGTTTGCTAATTAAAGGAGCGAAGATTGTGAACGATGACCAGTCTTTCTCCGCAGACATCTACATGGAGGATGGACTCATcaaGCAGATTGGGGAGAACCTGATCGTCCCAGGCGGGGTGAAGACCATCGACGCTCATGGCCGCATGGTGATGCCGGGCGGTATCGATGTCCACACTCGCTTTCAGATGCCTGACCGAGGCATGACGGCAGCTGATGACTTTTACCAGGGCACCCGGGCGGCAGTGGCAGGAGGAACCACCATGATCATCGACCATGTGATTCCGGAGCCCGGCACTGGCCTGATAGCGGCGTTTAATCAGTGGCGTCAGTGGGCCGACAGTAAGTCGTGCTGCGATTACTCGCTCCACGTCGATATCACTGAGTGGCACAAAGGCATCCAGGAGGACATGGAGACACTCGTCAAGGACCATGGTGTTAACTCTTTCCTGGTCTACCTGGCCTACAAGGATGTCTTCCAGCTGACCGACTCCCAGATCTACGAGGTGTTCAGCGTGATCCGAGACCTCGGCGCCATTGCACAGGTCCACGCTGAGAACGGAGACATCATCGCAGAGGAGCAGCGTAGAATCCTGGAGTTGGGAATCACCGGCCCGGAGGGACACGTGCTGAGCCGTCCAGAGGAGGTGGAGGCCGAGGCGGTGAACCGCTCCATCACAGTGGCCAATCAGACCAACTGTCCTCTTTACATCACCAAGGTGATGAGCAAGAGCGCCGCTGATGTCATCGCCCAGGCCAGGAAGAAAGGCACTGTGGTGTACGGGGAGCCAATCACGGCCAGTCTTGGCACAGACGGCTCGCACTATTGGAGCAAAAACTGGGCCAAAGCTGCAGCGTATGTGACCTCGCCGCCCCTGAGTCCGGATCCCACTACGCCCGACTATCTCAACTCCCTGCTGTCATGTGGCGACCTCCAAGTGACGGGCAGCGCCCACTGCACCTTCAACACCGCTCAGAGAGCCGTGGGGAAAGACGACTTCACCCTCATCCCTGAGGGAACCAACGGCACAGAGGAGAGGATGTCCATCATCTGGGACAAATGTGTGGTGTCTGGGAAGATGGATGAGAACCAGTTTGTGGCCGTGACCAGCACAAATGCAGCTAAGATCTTTAACCTGTACCCCCGTAAGGGCCGCATCGCTGTGGGATCAGACGCAGACCTGGTGCTGTGGGACCCCGACCTCACCAAGATCATCTCGGCCAAGAGCCACAATCTGGCGGTGGAGTACAACATCTTCGAGGGCATGGAAGTGCGTGGAGCTCCGCTGGTGGTCATTAGCCAGGGAAAGATCGTACTAGAGGACGGAACCCTGCACACCACTGAGGGCTCAGGACGCTACGTGACCCGAAAACCGTTCCCTGATTACGTCTACAAGAGGATAAAAGCCCGCAGCAGGCTTGCTGAGTTGAGGGGCGTTCCTCGTGGCCTGTACGACGGGCCGGTGTGTGAGGTCACCGTCACTCCCAAGGCTGTTACCCCTGCTTCTTCAGCCAAAACATCTCCGGCCAAGCAGCAAGGACAGCCTGTCAGGAACCTGCACCAGTCTGGATTCAGCCTCTCTGGTGCTCAGGTTGACGATAACGTTCCCCGTCGCAGCACTCAGCGCATCGTGGCACCCCCTGGTGGCAGGGCTAACATCACCAGCCTGGGTTAGAGCTCTCGGCTCCCTGCAGGAGATCAGGGGGTTGGGGGGTGTTTACAAGTGGAGGTGTTTCCGATACCAACGCTAGGTCCAGAGTCGAGACTCTCCACTCCCGAAACCCACTAACCCTCCTTTAATCTCATAGTCCCCTACTTTTACCCTGTTTTCCCTCCTTGCCCCAAACCCTAAACCCTCTCTTTGAGGAGAAATTTAGCGAAAAAGAAGTATTTGCCTCATGTGaagataaaaggaaaataattaacactcCATATTTGAGCACCTTGATTGTatgatttagcatttttatactgtatttttaccTATCGtgtgtcattttatattttttttctttatttaacaccttttttttattggagGGGTCCAGATAATAGGCTAAGCAGTTACTGTTTACcattataactttatttaacaagGTGAGTGGCATATAGAGTCCTAGCTTTGAGCACATCCAGTGGCATGAAGTTGTTTTTCTGTCATTGTAGggttttatataattttctgtAAGCACACAAAGGATTGTTAATATTCATTGCATAATTGGCTAAATGAAGTTATAACTTCGCATATAACGCATATAAACAATGGCTTTTTGACCAGAAATTGAAAACTTTCACTTATTCATTTGGCATAAATTAAAACCTTCAGGACATCTAATCAAACTATGAGCAAAGTTAAACTTGGAGTCCTCTCGATTTGGCCACATgatctgaataaataaaatccatatGAGGAAGCAGCTTTACTGCTTCAGAGTTAGTTCTGTGATTGGTAGTTGATGAATTGTGCACTGTTTAGTCATTTTAAAGGTGAGGTATTTGGAAATTGGCGCCCCGTGTGAGGACATTTCTGGCTTGTTGTGATTAAGGGTCAGGAACGCAAATCAGGAAGATGCTGATGGGAAATTAGGAAATTAGAGAGGAATGTCTGAGTTTTTAAAGTTTGCATTGTTGCAGTTGTTTTATATTCATGTAAAATGTGGATTTATTGGCATCGTAACTTCTGCCGTTCCTGTAAAGCGAGATTTCGGGGCCAGATCTGTCATCTTGGCTTATTATAATTGTGCTTCGCTTTGCAATGAAATTTAGCAGgttctgagtgtttttttattttaatttttttttattattattattttaaattttgccATTACATTCTGTGTTAATGAATATGATAATATGGATATGGCATTTTTACATcgatggaaatgaaaatgtaatatcttATGATTTAGATTAACCTAACACTTAGCTTTATGCCTGTGCCTAAAGTAACAGAAGTGTACTGATCATgttaagccttttttttcttttttctaattttattaaaCTTGCTGATGAAAAAAGAAGGCTATAGATGTAGAATAGCCGAAGTAAACCGATGCAAAGgtgccagatttttcttctcAACCCCTTTCCACAAGGGTCTTGTTCGAGATTCTGTGTCGCAGTGCCATTACAGGGGTGTCAATGTCAATGTTAGTGATGTAGTGCAATGGATGATCATTTACAATAAGGGACTTTCGCCACACTGAAATACACATCAACTGACCgggttttcaaaaaaaaa
>XM_026942648.2
CTTCTGTCCTTCTTGGCGCATCAGCGGAGAAAAGGAGAGCAGATATTCTTTCTTCGCCTTTGATTTGTCTTTTGCGCTTCGGCTCGATCGTCTCTGACTTCCGACCGCACAGCAGGGCCTGTTCTCCTCTTCCTGAAAAGCGCTCGAGCCTTTTTTTTGACGTCCATTTCAGCCATAACGGTTCATCCACAAGAGGGTGAAGATGTCCGGATATCAGGGCAAGAAGAACATCCCTCGCATCACCAGTGAGCGTTTGCTAATTAAAGGAGCGAAGATTGTGAACGATGACCAGTCTTTCTCCGCAGACATCTACATGGAGGATGGACTCATcaaGCAGATTGGGGAGAACCTGATCGTCCCAGGCGGGGTGAAGACCATCGACGCTCATGGCCGCATGGTGATGCCGGGCGGTATCGATGTCCACACTCGCTTTCAGATGCCTGACCGAGGCATGACGGCAGCTGATGACTTTTACCAGGGCACCCGGGCGGCAGTGGCAGGAGGAACCACCATGATCATCGACCATGTGATTCCGGAGCCCGGCACTGGCCTGATAGCGGCGTTTAATCAGTGGCGTCAGTGGGCCGACAGTAAGTCGTGCTGCGATTACTCGCTCCACGTCGATATCACTGAGTGGCACAAAGGCATCCAGGAGGACATGGAGACACTCGTCAAGGACCATGGTGTTAACTCTTTCCTGGTCTACCTGGCCTACAAGGATGTCTTCCAGCTGACCGACTCCCAGATCTACGAGGTGTTCAGCGTGATCCGAGACCTCGGCGCCATTGCACAGGTCCACGCTGAGAACGGAGACATCATCGCAGAGGAGCAGCGTAGAATCCTGGAGTTGGGAATCACCGGCCCGGAGGGACACGTGCTGAGCCGTCCAGAGGAGGTGGAGGCCGAGGCGGTGAACCGCTCCATCACAGTGGCCAATCAGACCAACTGTCCTCTTTACATCACCAAGGTGATGAGCAAGAGCGCCGCTGATGTCATCGCCCAGGCCAGGAAGAAAGGCACTGTGGTGTACGGGGAGCCAATCACGGCCAGTCTTGGCACAGACGGCTCGCACTATTGGAGCAAAAACTGGGCCAAAGCTGCAGCGTATGTGACCTCGCCGCCCCTGAGTCCGGATCCCACTACGCCCGACTATCTCAACTCCCTGCTGTCATGTGGCGACCTCCAAGTGACGGGCAGCGCCCACTGCACCTTCAACACCGCTCAGAGAGCCGTGGGGAAAGACGACTTCACCCTCATCCCTGAGGGAACCAACGGCACAGAGGAGAGGATGTCCATCATCTGGGACAAATGTGTGGTGTCTGGGAAGATGGATGAGAACCAGTTTGTGGCCGTGACCAGCACAAATGCAGCTAAGATCTTTAACCTGTACCCCCGTAAGGGCCGCATCGCTGTGGGATCAGACGCAGACCTGGTGCTGTGGGACCCCGACCTCACCAAGATCATCTCGGCCAAGAGCCACAATCTGGCGGTGGAGTACAACATCTTCGAGGGCATGGAAGTGCGTGGAGCTCCGCTGGTGGTCATTAGCCAGGGAAAGATCGTACTAGAGGACGGAACCCTGCACACCACTGAGGGCTCAGGACGCTACGTGACCCGAAAACCGTTCCCTGATTACGTCTACAAGAGGATAAAAGCCCGCAGCAGGCTTGCTGAGTTGAGGGGCGTTCCTCGTGGCCTGTACGACGGGCCGGTGTGTGAGGTCACCGTCACTCCCAAGGCTGTTACCCCTGCTTCTTCAGCCAAAACATCTCCGGCCAAGCAGCAAGGACAGCCTGTCAGGAACCTGCACCAGTCTGGATTCAGCCTCTCTGGTGCTCAGGTTGACGATAACGTTCCCCGTCGCAGCACTCAGCGCATCGTGGCACCCCCTGGTGGCAGGGCTAACATCACCAGCCTGGGTTAGAGCTCTCGGCTCCCTGCAGGAGATCAGGGGGTTGGGGGGTGTTTACAAGTGGAGGTGTTTCCGATACCAACGCTAGGTCCAGAGTCGAGACTCTCCACTCCCGAAACCCACTAACCCTCCTTTAATCTCATAGTCCCCTACTTTTACCCTGTTTTCCCTCCTTGCCCCAAACCCTAAACCCTCTCTTTGAGGAGAAATTTAGCGAAAAAGAAGTATTTGCCTCATGTGaagataaaaggaaaataattaacactcCATATTTGAGCACCTTGATTGTatgatttagcatttttatactgtatttttaccTATCGtgtgtcattttatattttttttctttatttaacaccttttttttattggagGGGTCCAGATAATAGGCTAAGCAGTTACTGTTTACcattataactttatttaacaagGTGAGTGGCATATAGAGTCCTAGCTTTGAGCACATCCAGTGGCATGAAGTTGTTTTTCTGTCATTGTAGggttttatataattttctgtAAGCACACAAAGGATTGTTAATATTCATTGCATAATTGGCTAAATGAAGTTATAACTTCGCATATAACGCATATAAACAATGGCTTTTTGACCAGAAATTGAAAACTTTCACTTATTCATTTGGCATAAATTAAAACCTTCAGGACATCTAATCAAACTATGAGCAAAGTTAAACTTGGAGTCCTCTCGATTTGGCCACATgatctgaataaataaaatccatatGAGGAAGCAGCTTTACTGCTTCAGAGTTAGTTCTGTGATTGGTAGTTGATGAATTGTGCACTGTTTAGTCATTTTAAAGGTGAGGTATTTGGAAATTGGCGCCCCGTGTGAGGACATTTCTGGCTTGTTGTGATTAAGGGTCAGGAACGCAAATCAGGAAGATGCTGATGGGAAATTAGGAAATTAGAGAGGAATGTCTGAGTTTTTAAAGTTTGCATTGTTGCAGTTGTTTTATATTCATGTAAAATGTGGATTTATTGGCATCGTAACTTCTGCCGTTCCTGTAAAGCGAGATTTCGGGGCCAGATCTGTCATCTTGGCTTATTATAATTGTGCTTCGCTTTGCAATGAAATTTAGCAGgttctgagtgtttttttattttaatttttttttattattattattttaaattttgccATTACATTCTGTGTTAATGAATATGATAATATGGATATGGCATTTTTACATcgatggaaatgaaaatgtaatatcttATGATTTAGATTAACCTAACACTTAGCTTTATGCCTGTGCCTAAAGTAACAGAAGTGTACTGATCATgttaagccttttttttcttttttctaattttattaaaCTTGCTGATGAAAAAAGAAGGCTATAGATGTAGAATAGCCGAAGTAAACCGATGCAAAGgtgccagatttttcttctcAACCCCTTTCCACAAGGGTCTTGTTCGAGATTCTGTGTCGCAGTGCCATTACAGGGGTGTCAATGTCAATGTTAGTGATGTAGTGCAATGGATGATCATTTACAATAAGGGACTTTCGCCACACTGAAATACACATCAACTGACCgggttttcaaaaaaaaa

Function

symbol description
dpysl2b Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds and microtubule binding activity. Acts upstream of or within axon regeneration and axonogenesis. Located in cytosol. Is expressed in nervous system; neural plate; otic vesicle; spinal cord neural tube; and trigeminal placode. Orthologous to human DPYSL2 (dihydropyrimidinase like 2).
dpysl2 Enables identical protein binding activity. Involved in endocytosis. Located in cytosol and plasma membrane. Colocalizes with membrane and microtubule.

NR:

description
dihydropyrimidinase-related protein 2-like

GO:

id name namespace
GO:0031103 axon regeneration biological_process
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K07528 DPYSL2, CRMP2; dihydropyrimidinase-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942647.2 True 3802 mRNA 0.49 15 22315294 22351716
XM_026942648.2 False 3499 mRNA 0.48 14 22321089 22351716

Neighbor

gene id symbol gene type direction distance location
bnip3lb bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042 coding upstream 4741 22291081 ~ 22310553 (+)
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding upstream 26261 22272066 ~ 22289033 (+)
LOC113543961 NA coding upstream 842176 21468412 ~ 21473118 (+)
LOC113523962 pla2g1b coding upstream 849151 21462543 ~ 21466143 (+)
LOC113544185 pla2g1b coding upstream 863221 21447235 ~ 21452073 (+)
igsf9a LOC108277156 coding downstream 28204 22379920 ~ 22426821 (+)
vsig8a LOC108277295 coding downstream 355245 22706961 ~ 22766275 (+)
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding downstream 415510 22767226 ~ 22780287 (+)
itga2.2 itga2 coding downstream 440862 22792578 ~ 22837618 (+)
fstb LOC108276855,LOC108433530 coding downstream 500765 22852481 ~ 22863830 (+)
G273226 NA non-coding upstream 277145 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 333103 21981979 ~ 21982191 (+)
G273248 NA non-coding upstream 352427 21962664 ~ 21962867 (+)
G272940 NA non-coding upstream 822622 21479900 ~ 21492672 (+)
G273473 NA non-coding downstream 210388 22562104 ~ 22562325 (+)
G273600 NA non-coding downstream 449365 22801081 ~ 22840120 (+)
LOC117599377 NA non-coding downstream 640826 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 685693 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 696205 23047921 ~ 23062345 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 281297 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 836414 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 953550 21359519 ~ 21361744 (+)
G272408 NA other upstream 1772340 20540325 ~ 20542954 (+)
G272374 NA other upstream 1886151 20423399 ~ 20429143 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 17540 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 270712 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 698096 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 892844 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 929845 23281561 ~ 23386107 (+)

Expression


Co-expression Network