sgtb (sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058)


Basic Information

Item Value
gene id sgtb
gene name sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24500862 ~ 24509560 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942649.2
GAGTTAGTGTGTTTATTACAcagctatcacacacacacacacacacacacacactctctactaATGCACGGGATGCATTATGGTGCACTCTGTGCTGATTTATGGTCTGGTGTTAATTATGCATGATGAGATGCACAGTGCAGGGTGAAAAACAGACCCATCGTCAGTTCCATCACATCCGCTGCATCACGTGCGCGCGGTTTCAGCGGCTGGACGAGGCGCGTTCATGTGCGCGAGGAGGAAACTGTGCAGTAAGAGTGCTGCGTGTCTCATGCAGTCGTGTTCTCTCAGACAGCATGGCCGTGGAAAAGCGCTTGGCGTATTCCATCGTGCAGTTCCTCCGAGACCAGACGCACTCAGGGTCACTAAACTCTGACGAGCAGGAAAGCCTCGAAGTCGCGATACAGTGTTTAGAGACGACGTTTAAGATCAGCTCCAGCGACGGGCAGCTCGCAGCTCCACAACCCCTCAGAGAGATCTTCCTCAACGCGCTGCTCAAGAACGACATTGTGGCGTCACAAGAGACGTCTCCGTCTGCAGAGGACATAGAGCGAGCCGAGCAGCTGAAAAACGAAGGAAACAACCACATGAAGGAGGAGAACTACAGCTGTGCGCTGGACTGCTACACAAAAGCCGTCCATCTGGACCAGAGAAATGCAGTTTACTTCTGTAACAGGGCTGCAGCACACAGCAAGCTGGGAAATTACACGGAAGCGATTGGAGACTGCGAGCGCGCCATCGCTATCGACCCCACCTACAGTAAAGCGTACGGACGAATGGGATTGGCGCTGGCTGCCATGAGCAAGTTTCCCGAAGCCATCACTTACTTTAAGAAGGCGCTGGTACTGGATCCGGAAAACGACACCTACAAATCCAACTTAAAGACGGCtgagcaaaaaaagagagaatccTCGGGTTCTaCGGTGTCCAGACTGGGCTTCGACATGGCCAGCCTCATTAACAACCCAGCGTTCATTAGCATGGCTGCCAGCGTGATGCAAAACCAGCAGGTTCAGCAGCTGATGTCGGGGATGATGTCTAACGCAGTGGGAGGTCCAGCAGCAGGAGTCGGGGGAATGTCTGATATCTCCAGCCTTATTGAAGCtggtcAGCAGTTTGCTCAGCAGATTCAGCAGCAGAACCCGGAGCTGATAGAACAGTTGAGGAACCACATCCGCAGTCAGTCGTTCAGCGGCAGTCCTGAGGAACGCTCCTGATCCACACGCTGTCTAGTCTGAGCGCCGGTGTGGGCGagcgagaggagagagagagagaagcgtgGCACTTTACCTGGAACTGAGAACACGGGTGTAAAAACTTTCACACTACACGACTTTCCTCATTAATTCATCATCGGTGTGAGCTTCTGTTCTAGACTTCTCATGTTCTAAAGGTTCTTAGTAGACGTTCTGTTAATTCCAGGACGTAATCGTCTTTATTAATCATGTTACATCACCGTCTAACTGTACGATCAGTAGCCAATCACAGACAACCTGTTCATATCACCCAATGGTGTCATGATGAAGGTAAACCTGCATAGCAACAAGCAGATGATTGGACGTTGCTGCACCATGTGACTTATAACACACTTATTTTTACTTGCTGAGCTTTtagtttttcctgttttttaatttttgtaaacagtgaattaaaggtgcagtgtgtaaagTTTAAAA
>XM_026942650.2
ttcagggcagaactaaataaacaacaacatgcAATTATTATGATTCCTCATATTTATTAagattttgcagattctgcaaggcgtatgtaaacttatgaccccgcTGTACATGTGCACGTACATCACACATCAGTCCTGCTCAGAAACTTTCATAACTACAGTGTGTCTGAAAAGACTGAGTCATTAATACGAGCTCTAAAACGAGACATGAGGATCAGAATGCAATATCTGGAACATCATTCACTTCTGAATATGGAGGAACTGAAGCAGATAACATGCTCATTTACGCATACGCATAAAAAATGATCTGATAACAACATCCGATACCAGGTGATGCTCTGTGACGTAATCCTAGTGCACGCTGTTGCTCTAATGAACAGACGACAGGAAATGGCGGAAATCTGGACATATTTCAGGATTAATGATCAAAGCAGAGCagaaatatcaagaggaggaactacagcatcttcctacaacaCACATCACCTGAAAAAACATCTTcatggtgtttaaacagtgtgtttaatagagAGCATGATAATagagagtcacacacacacacacacacacacacacacagtgtattagCGAGTAAggagcagtgaagtgagtgtTTAGAGAAGCTGTTGCTGGTGAGTGAGAGAGCACTTCacttcagcgagcactgagcactgagacgcTCTGCTCGTGAGTCGAGGTGGAGTTCACTACACCATGCGCTCATGTTTAGTGTCCTCACTCGCTgatactgctgtgtgtgttccgTCGTCACGctctctattacacacactgtttaaacaccataaacatCTTAAACGCAAGAACTAGCAGCGCACCAACAACCGACATAAACACAGAGAAATCAAATGTCATGTGAcgtccctgattgattaatattcAGTAGTTATTCATTTCAGTAGCAGTATCAGTACAACACGCACTCTCACTGaatctggaaaaaaatggtattgatgGATCACTACTTCAGACTAATTGTTCTCTCAGACAGCATGGCCGTGGAAAAGCGCTTGGCGTATTCCATCGTGCAGTTCCTCCGAGACCAGACGCACTCAGGGTCACTAAACTCTGACGAGCAGGAAAGCCTCGAAGTCGCGATACAGTGTTTAGAGACGACGTTTAAGATCAGCTCCAGCGACGGGCAGCTCGCAGCTCCACAACCCCTCAGAGAGATCTTCCTCAACGCGCTGCTCAAGAACGACATTGTGGCGTCACAAGAGACGTCTCCGTCTGCAGAGGACATAGAGCGAGCCGAGCAGCTGAAAAACGAAGGAAACAACCACATGAAGGAGGAGAACTACAGCTGTGCGCTGGACTGCTACACAAAAGCCGTCCATCTGGACCAGAGAAATGCAGTTTACTTCTGTAACAGGGCTGCAGCACACAGCAAGCTGGGAAATTACACGGAAGCGATTGGAGACTGCGAGCGCGCCATCGCTATCGACCCCACCTACAGTAAAGCGTACGGACGAATGGGATTGGCGCTGGCTGCCATGAGCAAGTTTCCCGAAGCCATCACTTACTTTAAGAAGGCGCTGGTACTGGATCCGGAAAACGACACCTACAAATCCAACTTAAAGACGGCtgagcaaaaaaagagagaatccTCGGGTTCTaCGGTGTCCAGACTGGGCTTCGACATGGCCAGCCTCATTAACAACCCAGCGTTCATTAGCATGGCTGCCAGCGTGATGCAAAACCAGCAGGTTCAGCAGCTGATGTCGGGGATGATGTCTAACGCAGTGGGAGGTCCAGCAGCAGGAGTCGGGGGAATGTCTGATATCTCCAGCCTTATTGAAGCtggtcAGCAGTTTGCTCAGCAGATTCAGCAGCAGAACCCGGAGCTGATAGAACAGTTGAGGAACCACATCCGCAGTCAGTCGTTCAGCGGCAGTCCTGAGGAACGCTCCTGATCCACACGCTGTCTAGTCTGAGCGCCGGTGTGGGCGagcgagaggagagagagagagaagcgtgGCACTTTACCTGGAACTGAGAACACGGGTGTAAAAACTTTCACACTACACGACTTTCCTCATTAATTCATCATCGGTGTGAGCTTCTGTTCTAGACTTCTCATGTTCTAAAGGTTCTTAGTAGACGTTCTGTTAATTCCAGGACGTAATCGTCTTTATTAATCATGTTACATCACCGTCTAACTGTACGATCAGTAGCCAATCACAGACAACCTGTTCATATCACCCAATGGTGTCATGATGAAGGTAAACCTGCATAGCAACAAGCAGATGATTGGACGTTGCTGCACCATGTGACTTATAACACACTTATTTTTACTTGCTGAGCTTTtagtttttcctgttttttaatttttgtaaacagtgaattaaaggtgcagtgtgtaaagTTTAAAA
>XM_026942651.2
GGCGGACGCGCTGTGTGCAGAGTGGCTGTGACGCGCTGGGGCTGATTGCGGGGCTGTTGGTGGTTTGTGCAGTGTTCTCTCAGACAGCATGGCCGTGGAAAAGCGCTTGGCGTATTCCATCGTGCAGTTCCTCCGAGACCAGACGCACTCAGGGTCACTAAACTCTGACGAGCAGGAAAGCCTCGAAGTCGCGATACAGTGTTTAGAGACGACGTTTAAGATCAGCTCCAGCGACGGGCAGCTCGCAGCTCCACAACCCCTCAGAGAGATCTTCCTCAACGCGCTGCTCAAGAACGACATTGTGGCGTCACAAGAGACGTCTCCGTCTGCAGAGGACATAGAGCGAGCCGAGCAGCTGAAAAACGAAGGAAACAACCACATGAAGGAGGAGAACTACAGCTGTGCGCTGGACTGCTACACAAAAGCCGTCCATCTGGACCAGAGAAATGCAGTTTACTTCTGTAACAGGGCTGCAGCACACAGCAAGCTGGGAAATTACACGGAAGCGATTGGAGACTGCGAGCGCGCCATCGCTATCGACCCCACCTACAGTAAAGCGTACGGACGAATGGGATTGGCGCTGGCTGCCATGAGCAAGTTTCCCGAAGCCATCACTTACTTTAAGAAGGCGCTGGTACTGGATCCGGAAAACGACACCTACAAATCCAACTTAAAGACGGCtgagcaaaaaaagagagaatccTCGGGTTCTaCGGTGTCCAGACTGGGCTTCGACATGGCCAGCCTCATTAACAACCCAGCGTTCATTAGCATGGCTGCCAGCGTGATGCAAAACCAGCAGGTTCAGCAGCTGATGTCGGGGATGATGTCTAACGCAGTGGGAGGTCCAGCAGCAGGAGTCGGGGGAATGTCTGATATCTCCAGCCTTATTGAAGCtggtcAGCAGTTTGCTCAGCAGATTCAGCAGCAGAACCCGGAGCTGATAGAACAGTTGAGGAACCACATCCGCAGTCAGTCGTTCAGCGGCAGTCCTGAGGAACGCTCCTGATCCACACGCTGTCTAGTCTGAGCGCCGGTGTGGGCGagcgagaggagagagagagagaagcgtgGCACTTTACCTGGAACTGAGAACACGGGTGTAAAAACTTTCACACTACACGACTTTCCTCATTAATTCATCATCGGTGTGAGCTTCTGTTCTAGACTTCTCATGTTCTAAAGGTTCTTAGTAGACGTTCTGTTAATTCCAGGACGTAATCGTCTTTATTAATCATGTTACATCACCGTCTAACTGTACGATCAGTAGCCAATCACAGACAACCTGTTCATATCACCCAATGGTGTCATGATGAAGGTAAACCTGCATAGCAACAAGCAGATGATTGGACGTTGCTGCACCATGTGACTTATAACACACTTATTTTTACTTGCTGAGCTTTtagtttttcctgttttttaatttttgtaaacagtgaattaaaggtgcagtgtgtaaagTTTAAAA
>XM_026942652.2
GCGGGGAGGAAGCAGCAGCAACACAAcaaccagcaccagcaccactACACTGTTACTGAGGTGTTCTCTCAGACAGCATGGCCGTGGAAAAGCGCTTGGCGTATTCCATCGTGCAGTTCCTCCGAGACCAGACGCACTCAGGGTCACTAAACTCTGACGAGCAGGAAAGCCTCGAAGTCGCGATACAGTGTTTAGAGACGACGTTTAAGATCAGCTCCAGCGACGGGCAGCTCGCAGCTCCACAACCCCTCAGAGAGATCTTCCTCAACGCGCTGCTCAAGAACGACATTGTGGCGTCACAAGAGACGTCTCCGTCTGCAGAGGACATAGAGCGAGCCGAGCAGCTGAAAAACGAAGGAAACAACCACATGAAGGAGGAGAACTACAGCTGTGCGCTGGACTGCTACACAAAAGCCGTCCATCTGGACCAGAGAAATGCAGTTTACTTCTGTAACAGGGCTGCAGCACACAGCAAGCTGGGAAATTACACGGAAGCGATTGGAGACTGCGAGCGCGCCATCGCTATCGACCCCACCTACAGTAAAGCGTACGGACGAATGGGATTGGCGCTGGCTGCCATGAGCAAGTTTCCCGAAGCCATCACTTACTTTAAGAAGGCGCTGGTACTGGATCCGGAAAACGACACCTACAAATCCAACTTAAAGACGGCtgagcaaaaaaagagagaatccTCGGGTTCTaCGGTGTCCAGACTGGGCTTCGACATGGCCAGCCTCATTAACAACCCAGCGTTCATTAGCATGGCTGCCAGCGTGATGCAAAACCAGCAGGTTCAGCAGCTGATGTCGGGGATGATGTCTAACGCAGTGGGAGGTCCAGCAGCAGGAGTCGGGGGAATGTCTGATATCTCCAGCCTTATTGAAGCtggtcAGCAGTTTGCTCAGCAGATTCAGCAGCAGAACCCGGAGCTGATAGAACAGTTGAGGAACCACATCCGCAGTCAGTCGTTCAGCGGCAGTCCTGAGGAACGCTCCTGATCCACACGCTGTCTAGTCTGAGCGCCGGTGTGGGCGagcgagaggagagagagagagaagcgtgGCACTTTACCTGGAACTGAGAACACGGGTGTAAAAACTTTCACACTACACGACTTTCCTCATTAATTCATCATCGGTGTGAGCTTCTGTTCTAGACTTCTCATGTTCTAAAGGTTCTTAGTAGACGTTCTGTTAATTCCAGGACGTAATCGTCTTTATTAATCATGTTACATCACCGTCTAACTGTACGATCAGTAGCCAATCACAGACAACCTGTTCATATCACCCAATGGTGTCATGATGAAGGTAAACCTGCATAGCAACAAGCAGATGATTGGACGTTGCTGCACCATGTGACTTATAACACACTTATTTTTACTTGCTGAGCTTTtagtttttcctgttttttaatttttgtaaacagtgaattaaaggtgcagtgtgtaaagTTTAAAA

Function

symbol description
sgtb Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTB (small glutamine rich tetratricopeptide repeat co-chaperone beta).

NR:

description
PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein beta

GO: NA

KEGG:

id description
K24925 SGTB; small glutamine-rich tetratricopeptide repeat-containing protein beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942649.2 False 1676 mRNA 0.50 11 24500862 24509378
XM_026942650.2 True 2390 mRNA 0.46 11 24500862 24508446
XM_026942651.2 False 1468 mRNA 0.50 11 24500862 24509560
XM_026942652.2 False 1457 mRNA 0.50 11 24500862 24509480

Neighbor

gene id symbol gene type direction distance location
trim23 trim23,LOC107658681 coding downstream 23786 24465097 ~ 24477076 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding downstream 45907 24378185 ~ 24454955 (-)
srek1ip1 NA coding downstream 191037 24306452 ~ 24309825 (-)
lin54 lin54,LOC107744261 coding downstream 226609 24259708 ~ 24274253 (-)
LOC113543977 NA coding downstream 306989 24118023 ~ 24193873 (-)
smc5 smc5,LOC107726549,LOC107734934 coding upstream 149248 24658808 ~ 24697852 (-)
mamdc2b LOC108277069 coding upstream 189231 24698791 ~ 24718235 (-)
tjp2a NA coding upstream 223988 24733548 ~ 24749451 (-)
pip5k1ba pip5k1b,LOC108428883,LOC107726562,LOC107705047,LOC107667273 coding upstream 251656 24761216 ~ 24777827 (-)
actr1 actr1,acty,LOC106585571,LOC105889177,LOC106563059,LOC107602067 coding upstream 283994 24793554 ~ 24797730 (-)
G274771 NA non-coding downstream 8748 24491466 ~ 24492114 (-)
G274489 NA non-coding downstream 253305 24245196 ~ 24247557 (-)
LOC113543934 NA non-coding downstream 283184 24216715 ~ 24217678 (-)
LOC117599329 NA non-coding downstream 374655 24125158 ~ 24126207 (-)
G274425 NA non-coding downstream 391414 24108470 ~ 24109448 (-)
G274781 nln non-coding upstream 3728 24513288 ~ 24651673 (-)
G274804 NA non-coding upstream 36640 24546200 ~ 24547152 (-)
G274810 NA non-coding upstream 55082 24564642 ~ 24617704 (-)
G274819 NA non-coding upstream 81680 24591240 ~ 24591960 (-)
G274808 NA non-coding upstream 86660 24596220 ~ 24678758 (-)
LOC113544170 plac8 other downstream 199830 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 247550 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 637594 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 698578 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3293692 21189969 ~ 21207170 (-)

Expression


Co-expression Network