sh2d3ca (sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235)


Basic Information

Item Value
gene id sh2d3ca
gene name sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23566714 ~ 23618521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942654.2
CAGTTGGAGACAGTCAGGGACAGTTGGAGACAGTTGGAGACAGTTGGAGACAGTCAGAGaaattgtaattgctgtaaTTGCTGTAGCTCTGAAGCCTTTCTGACTTCAGTACATTTGTCCGTCTTATATGAGAGCGAGGTTTGCGTTGGCTCCACCACAAACCCAGGGCTGCTCATATCTGTGCAGCTCAACACAGGAAGTGTTACACTGACACTTCTTACACTGCACCAGCTcttctgtccacacacacacacacacacacacacacacacacacacacacacacacacacaaggacataCGAGAAGGAAGCAGGTTATTCAGAACTATCTAGGAAAGAACATAAACATCTACATCCTGACAAAGGGACAACATGCTCAAGCACAAACTGAGTTTTAAGTGGTTTGGGAGTCTGGGTAACCTTTCCTTTCGTCGCAAGTCGGACGCAGCAAAGGAAGCTTCCCAAAAGGATGACTTGGCGCCCATCGATGATGATGAAATGCGCCCTCGCTGCCCGAGCTACGCCCGTTCCAGTGAAATGTACACCCACATGGGCACCATGCCTCGCcctaagaaaaagaaagataagagCATCAAGTCTAAAAGTCAGGATCAGAAGagtcttaaaaataaaaccaagacCAAGAGCAGCCCCTTGAGCCGGAGTCAGAGCATGAGATGTTCGGACTACGTGATCGAGTCGCCTCTCCTCAGCGCTCTCAATGGCAAAGCGCTCTCAAGCCTGCACGAGAACAAGGTAGACAACAAGCTCACACCACAACACCAGAAAGCTGAGTCCAAGGAAGAACCTGAAGCTGTGATCACTGAGCAGAGCCATAAAGATCCggataacacacactcaaaaccCGCAGAAGATCCAGATCCACCTCCGGATGCTCTCCAGGAGAAACCAGCACTGCCTAGGAAGAGTAGTCTCCCTGTAAAGATCTCTGTGGACCTGCAGGAGGAAAACACTTCCACCGTCAGTGAGCATCATcaacagaaagaagaagagaaaagaaaaacaagtccAGATCCTGAAAGtcaAAAGGGAACCACAGACAGTCAAGGAGAGTATGTAGAGttctCCAAGGAGAAGTACCTGTTGGAGTCTCCCCCAGAGAAGCTGAggaaggagctggaggaggaacTCAAACTCAGCAGCAGTGACCTGAGGAGCCACGGCTGGTACCATGGCCGCATCCCacgagagGTGTCGGAGACGCTGGCTCTGCGCAGCGGGGATTTCCTGGTGCGAGACTCTCTGGCCAACGCGGGCGATTACGTGATCACGTGTCGCTGGCAGCAGGAAGTGGTGCACTGCCGCATCAGTAAGGTTCTGGTGAAGAGCGGACAGACGAAGGTGCAGTTCCTCCTGGAGGACGAGACCTTCGACTCGCTGCCCACTCTGATCCGGCACCACGCTGGCACCGGCCGGCCCGTGTGCCCGCGCTCCGGCGCTCAGCTGCTGTGCCCCGTCAACCGCACGCTGCCCCTCAGGTACCTGGAGGCCACGTTTGCCCTGGCGAGCGGGAGATCGGGGTCACATTCACCATCCGCTCAGCGGGGGGCGCACATCAAGAGACGCAGCGTCACCATGACGGACGGCCTGACCACCGAGAAGATCATCCCACACAGCGATGGCGAGTCGAGTGAAGCGGCCGACTCTCGAGTATCAGACACCAAAGCGAAGACGGAGCAGGGAtgcagctgTCCATCCACAGTTCACCATAAAGACGCCATGAGGAACTGTGCGCTCAGTATGGACCAGATCCAGGAGATGCGCTGTCCCCTGTCCCCTGTAGGAGAAGCTCCTCTCTCACCTGCCTACACCTCCATTTCCCGTCACAGACATGGCTCAGGTGGGCGTGTCTTAGCCGTCATTCCACCTTCGCCGGTGATGCGACGATCCAGCGAGCCCCAcctctccccctcctcctccagtAACAATGTCCCGTGCTCGGACACGCCCCCCAACGCTCATGGCTACCCCTCAGATGGCTCAGAAGGAGGGGGCAGTTACTGCGAGCTGAGGCCGGGCCAGCCCCCAACGCCTCCATCTAAGAGCTACGTGGAGAGGCTGAGGGTGGAGGAGGGCCGAGCACCAGGCTCCGCCCCTAGCGATGGAggagaaagcttcaccatgcCTCTGGTGGAGAGCAGTTCGTGCTTCAGACCCGGGCGGTACCAATCAACCCTGCTTCCTGCAGAGAATAAGCCCCTGGAGATGGGGGTCCTGAAGAGGGTGAAGGAACTGCTGGCTGAGGTGGACCCTAAAACAGCAGCCAAACACATCACCAAGGCTGACTGCATGGTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAAAGGATGATGGGAGTTAGTTCGGGGCTGGAGTTGCTGACTCTACCACATGGCCATCAGCTGAGACTGGACCTGCTCgagagGTTCTACACCATGTCCATAATGATGGCGGTGGACCTGCTGGGCTGTACGGGCAGTACGGAGGAACGAGCCGCTCTGCTCTATAAGACCATCCAGCTGGCAGCCGAGCTCAAGAGCACCATGGGAAATATGTTCGGATTCGCCGCCATCATGAGAGCGCTGGAACTTCCGCAGATCTCACGCTTGGACCAGACGTGGATGACGCTGAGGCAGAGACACACGGAGGGAGCCATCTTGTACGAGAAGAAGCTCAAACCCTTCATGAAGGGCTTAAATGAAGGCAAAGAGAGCTCTGTGCTGTCGAGTACGTCTTTCCCACACGTGGTGCCCGTGTTGTGTCTGTTGGAGAAGGGCGTGGCCGTGGGGGAGGGGCCAGAGCCGTGGGATGCTTCAGAATGTGGCGTGGACGTGGTCATGAGCCACCTAGAGGCAGCACGCAGCATTGCACACCACGGAGGCCTGTACCACACCAACGCCGAGAGCAAGCTTCACGacttccaggagagagaggaagtgtcGGAGATCTTCTGCACGGAATTCCAGATGAGGCTGCTCTGGGGAAGCCGAGGTTCTGAGGGGAGCCAGAGCGAACGCTACGAGAAGTTCGACAAAGTCCTCACGGCTCTTTCGCACAAGCTGGAGCCTCCTGTACGCCACAGCGAGCTATAGCACCACCCCCCACCCCCGTCTGGCACATTGGTACTGTCCGTCACCTCACTGTCTTTCCCACTTCTGGGAGAGACCATTATACTTctgggagagacagaggaaagcGAAAGAGGAAATGGAAAAGGAGCAAATCAAATCTAATCTGCGAATAAGGCACAAAAGGGGGCGGGGTTTATCCAGACGGGATGGCGCCTCGTATCGTACGGAACGCAGAACTACGGCAGGGGCGGAGTTTAAAATCCTGACACCAAAATCTCTTTTCTGACTCGGGAGATGAGGGATCGAGAAACATCTTTTTCGTGATCTCAGTCTGCATGATCATCACTCCATCGTCCCGGGACACTCAGAGAGACGTCACACTCAGTCACTCATCTAATGTCTTAATGTCTTAATGTATGTTGCCAAAACCACTTTCTTTACAAACatctcatttttatacatttttattattattattatttttattatgtttattttgattTCTGCGTACAAGGAGCAATATGTGGCAACCGACACACTCAGTACACAATGCTGTGGAGATGGTGGAGATCTCAGTGTAGTCTATGGGTGAGTGTGTAAGGTTGAGGATCTCATCCTGGACCTCACCCTGGTTCCTGCTGGAGATCTCACCACAAatcctgatttaaaaaagagacTCAAAATGGTTCCTGTTGGTGATCTGTTGAAGATCTCACCCTGGTTCCTGTTGGTGATCTGTTGAAGATCTCACCCTGGTTCCTGTTAAAGATTTGTTGAAGATCTCACTCTGGTTCCTGTTAAAGATTTATTGAAGATCTCACCTTGGTTCAGGTTAAAGAGTTGAGGATATCTGTTGAAGATCTCACCTTGGGTGCTTTGGAAAATTATAGCTTTCATCCTGGTTACTGTTGAAGATCTCACAACAAGTCAGGGGAAATGTTTTACAGTAGTTCCTGTTAAAGATCTCACACTGGTTCCTGTTAAATATCTGTTGAAGGTCTCATCCCAGCTCTGTTTAAGATCTCACCTATCAACCTAGGTCCTCTTAAAGATCTCACCCTAGTTTCTGTAGAAGACCTCATCTTAGTTCCAGTTGAAGTTCTCACCACAAATCCTGTTAAAAATCTGTTGAAAAAAGATCTCACCCTGGTTCCTCTAAAAGATCACATCAGGATCTCACCCTGGTTCCTGTTGAAGATTTGTtgaagatctctctctctctctctctctctctctctctctctctctctctctggttcctGTTAAAGAACTGTTGAACATCTCACCCTGATTCTTGTTAAAAATGTCACCACAAGTCCTAGTAAGGATCTCACCCTAGTTCCTGTTAAAGCTCCTCCCTAGATTCCTTTTAAAGATCTCCCTATGGAACTCGTTGAAGctcctctctgaagatctcCTGTGCAGACTGATACGCTGAGGTGGTGGACGTGCTGCATGTTGCTCCTTTACTCCTGTCACGGCTTTACCGAGTGCGAAGACTGGAGAGAAACTGTGAAGAGTGTAAAcctgttgtgtgtttgagtacgttttcattttctccattttacacatgtgtgtgtgtgtgtgtgtgagggaaagtgtgtgtgtgagggaaagtgtgtgtgtgtgtgtgtgtgtgtgaggtcttCAGGATAAAGTCCAGTGTAATAACTGGATGGTGTGAATTTTCTCTGTGTGATATTTTGgacattataataatttaatttatattcatcGATTGAGGCggttttatttttcctgctcCGTCTCAGCGCATGCTCCACTCTGGAACcctgaaataaaacataaagcaaaaaattagacattttttaaaaaaaataataacagtctttgtttatttttttgggtAGTTCAGTTTCAGaggacagtgagagaaagaacttctgttttctctccttattttttatttattcgcTTTAAAACCAGCGCTCGTCCCACTGTTCAGGTCAATCAGACTCAAAGTGATATACCTCTTACTGTAATTCTCTTTCCTGATATTATTACAGCTCACCTGTATTCGTATTTCCCCCTGATGATAATTACAGATGCCTTTATTTCTTGATTTCTTGATTTCTTGATTTCTCAGTAGTTCTGCGATCACCACCATTAACTGTCTGTTTAGCAAACTTTATTCCCAGGGGATTAAAAACACATGGTGGAGGCTCTATTTcaggtaatttttttataaaagcaatttGAGATGAGGATAGAGGAATGGAGGAGCTCTGTATGCAATTCCACTCCGAGTCAGAAGAGGGCTCTGTacagcaagcaaaaaaaaataaaaaataaaaaaaattttaagggaaaaaagagagcgCAAATGAGGCATGACAATTTGCACCAACATGGATTAAATATCATGAagttttcattaattaatcagttaGTCATCCAAGGTTgaaattttaaatctaattcACCTGACATAAATCTTGAACAATGAAATTCTGCACAGATGCTGCAGTAGAAACtagagtataaataaataaataaacaaacaaacaaacaaataaataaataaataaaattacaacaatgtttaaaaaaaaaacagaaaataaccAATAACATTAGAAAGTTGTCATGGACagatttcatattttacataatcCTACTTTGGAgagtatagttttttttattattattataattgaattttaatattattttaaaaatgtatttaattttcacTTCTACATTTCAATACTACAAGCAGATTTGCATCATTTATGGAGCAGAACTCTCAGTCAGGATTCGGTTTAACGGAATCAAATGCAGGTGTGAATTGGAGATACATACATGTGAATTAACTCCAGGTGAAACTGAGTCCACGTTGGTGCAAACTCACACTCAGAGgcatttttacagatttgtttGGATTGCACTGAGTGTTTTGTGACTGATATGAGGTTTATTTCATGGTGTAAATAGAGAATGAACTCTGATAGACAACATGTTTGAAGCTGATTTTGGTTGCATCTTCTTTCTTATGTGCTGTACATATGAGTATGTGATATGTTTTTCAATCTTTTTTCcaggaaataaaatacagtaagcTTGC
>XM_026942655.2
AGTTGGAGACAGTCAGGGACAGTTGGAGACAGTTGGAGACAGTTGGAGACAGTCAGAGaaattgtaattgctgtaaTTGCTGTAGCTCTGAAGCCTTTCTGACTTCAGTACATTTGTCCGTCTTATATGAGAGCGAGGTTTGCGTTGGCTCCACCACAAACCCAGGGCTGCTCATATCTGTGCAGCTCAACACAGGAAGTGTTACACTGACACTTCTTACACTGCACCAGCTcttctgtccacacacacacacacacacacacacacacacacacacacacacacacacacaaggacataCGAGAAGGAAGCAGGTTATTCAGAACTATCTAGGAAAGAACATAAACATCTACATCCTGACAAAGGGACAACATGCTCAAGCACAAACTGAGTTTTAAGTGGTTTGGGAGTCTGGGTAACCTTTCCTTTCGTCGCAAGTCGGACGCAGCAAAGGAAGCTTCCCAAAAGGATGACTTGGCGCCCATCGATGATGATGAAATGCGCCCTCGCTGCCCGAGCTACGCCCGTTCCAGTGAAATGTACACCCACATGGGCACCATGCCTCGCcctaagaaaaagaaagataagagCATCAAGTCTAAAAGTCAGGATCAGAAGagtcttaaaaataaaaccaagacCAAGAGCAGCCCCTTGAGCCGGAGTCAGAGCATGAGATGTTCGGACTACGTGATCGAGTCGCCTCTCCTCAGCGCTCTCAATGGCAAAGCGCTCTCAAGCCTGCACGAGAACAAGGTAGACAACAAGCTCACACCACAACACCAGAAAGCTGAGTCCAAGGAAGAACCTGAAGCTGTGATCACTGAGCAGAGCCATAAAGATCCggataacacacactcaaaaccCGCAGAAGATCCAGATCCACCTCCGGATGCTCTCCAGGAGAAACCAGCACTGCCTAGGAAGAGTAGTCTCCCTGTAAAGATCTCTGTGGACCTGCAGGAGGAAAACACTTCCACCGTCAGTGAGCATCATcaacagaaagaagaagagaaaagaaaaacaagtccAGATCCTGAAAGtcaAAAGGGAACCACAGACAGTCAAGGAGAGTATGTAGAGttctCCAAGGAGAAGTACCTGTTGGAGTCTCCCCCAGAGAAGCTGAggaaggagctggaggaggaacTCAAACTCAGCAGCAGTGACCTGAGGAGCCACGGCTGGTACCATGGCCGCATCCCacgagagGTGTCGGAGACGCTGGCTCTGCGCAGCGGGGATTTCCTGGTGCGAGACTCTCTGGCCAACGCGGGCGATTACGTGATCACGTGTCGCTGGCAGCAGGAAGTGGTGCACTGCCGCATCAGTAAGGTTCTGGTGAAGAGCGGACAGACGAAGGTGCAGTTCCTCCTGGAGGACGAGACCTTCGACTCGCTGCCCACTCTGATCCGGCACCACGCTGGCACCGGCCGGCCCGTGTGCCCGCGCTCCGGCGCTCAGCTGCTGTGCCCCGTCAACCGCACGCTGCCCCTCAGGTACCTGGAGGCCACGTTTGCCCTGGCGAGCGGGAGATCGGGGTCACATTCACCATCCGCTCAGCGGGGGGCGCACATCAAGAGACGCAGCGTCACCATGACGGACGGCCTGACCACCGAGAAGATCATCCCACACAGTCCATCCACAGTTCACCATAAAGACGCCATGAGGAACTGTGCGCTCAGTATGGACCAGATCCAGGAGATGCGCTGTCCCCTGTCCCCTGTAGGAGAAGCTCCTCTCTCACCTGCCTACACCTCCATTTCCCGTCACAGACATGGCTCAGGTGGGCGTGTCTTAGCCGTCATTCCACCTTCGCCGGTGATGCGACGATCCAGCGAGCCCCAcctctccccctcctcctccagtAACAATGTCCCGTGCTCGGACACGCCCCCCAACGCTCATGGCTACCCCTCAGATGGCTCAGAAGGAGGGGGCAGTTACTGCGAGCTGAGGCCGGGCCAGCCCCCAACGCCTCCATCTAAGAGCTACGTGGAGAGGCTGAGGGTGGAGGAGGGCCGAGCACCAGGCTCCGCCCCTAGCGATGGAggagaaagcttcaccatgcCTCTGGTGGAGAGCAGTTCGTGCTTCAGACCCGGGCGGTACCAATCAACCCTGCTTCCTGCAGAGAATAAGCCCCTGGAGATGGGGGTCCTGAAGAGGGTGAAGGAACTGCTGGCTGAGGTGGACCCTAAAACAGCAGCCAAACACATCACCAAGGCTGACTGCATGGTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAAAGGATGATGGGAGTTAGTTCGGGGCTGGAGTTGCTGACTCTACCACATGGCCATCAGCTGAGACTGGACCTGCTCgagagGTTCTACACCATGTCCATAATGATGGCGGTGGACCTGCTGGGCTGTACGGGCAGTACGGAGGAACGAGCCGCTCTGCTCTATAAGACCATCCAGCTGGCAGCCGAGCTCAAGAGCACCATGGGAAATATGTTCGGATTCGCCGCCATCATGAGAGCGCTGGAACTTCCGCAGATCTCACGCTTGGACCAGACGTGGATGACGCTGAGGCAGAGACACACGGAGGGAGCCATCTTGTACGAGAAGAAGCTCAAACCCTTCATGAAGGGCTTAAATGAAGGCAAAGAGAGCTCTGTGCTGTCGAGTACGTCTTTCCCACACGTGGTGCCCGTGTTGTGTCTGTTGGAGAAGGGCGTGGCCGTGGGGGAGGGGCCAGAGCCGTGGGATGCTTCAGAATGTGGCGTGGACGTGGTCATGAGCCACCTAGAGGCAGCACGCAGCATTGCACACCACGGAGGCCTGTACCACACCAACGCCGAGAGCAAGCTTCACGacttccaggagagagaggaagtgtcGGAGATCTTCTGCACGGAATTCCAGATGAGGCTGCTCTGGGGAAGCCGAGGTTCTGAGGGGAGCCAGAGCGAACGCTACGAGAAGTTCGACAAAGTCCTCACGGCTCTTTCGCACAAGCTGGAGCCTCCTGTACGCCACAGCGAGCTATAG
>XM_026942657.2
ccccacctCCTCCTTTCATCCGAGAGCGATGAGGTAATCCCTGCCAGCTCTCTGAAGCATAGACAGTGCGGCTCTGTGCTCACACACTCTTGTACGTATCCTgagtgtgtgcgtctgtgtgtgcatgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgagtgtgagcgaCGAGGGGCATGACCCGGACCTTCTAGTGGACCCTAAGACGAAAAAGAGAACTGGATAGAGGGAGacaggaggaggaaaagaggaagcatGACGGAGAGATGCAGTCTGTGGAGCGCCCTGTCTGCAGCCGCCTGCTGCTTCTACAGGGGATCGTTCATGCagttctCCAAGGAGAAGTACCTGTTGGAGTCTCCCCCAGAGAAGCTGAggaaggagctggaggaggaacTCAAACTCAGCAGCAGTGACCTGAGGAGCCACGGCTGGTACCATGGCCGCATCCCacgagagGTGTCGGAGACGCTGGCTCTGCGCAGCGGGGATTTCCTGGTGCGAGACTCTCTGGCCAACGCGGGCGATTACGTGATCACGTGTCGCTGGCAGCAGGAAGTGGTGCACTGCCGCATCAGTAAGGTTCTGGTGAAGAGCGGACAGACGAAGGTGCAGTTCCTCCTGGAGGACGAGACCTTCGACTCGCTGCCCACTCTGATCCGGCACCACGCTGGCACCGGCCGGCCCGTGTGCCCGCGCTCCGGCGCTCAGCTGCTGTGCCCCGTCAACCGCACGCTGCCCCTCAGGTACCTGGAGGCCACGTTTGCCCTGGCGAGCGGGAGATCGGGGTCACATTCACCATCCGCTCAGCGGGGGGCGCACATCAAGAGACGCAGCGTCACCATGACGGACGGCCTGACCACCGAGAAGATCATCCCACACAGCGATGGCGAGTCGAGTGAAGCGGCCGACTCTCGAGTATCAGACACCAAAGCGAAGACGGAGCAGGGAtgcagctgTCCATCCACAGTTCACCATAAAGACGCCATGAGGAACTGTGCGCTCAGTATGGACCAGATCCAGGAGATGCGCTGTCCCCTGTCCCCTGTAGGAGAAGCTCCTCTCTCACCTGCCTACACCTCCATTTCCCGTCACAGACATGGCTCAGGTGGGCGTGTCTTAGCCGTCATTCCACCTTCGCCGGTGATGCGACGATCCAGCGAGCCCCAcctctccccctcctcctccagtAACAATGTCCCGTGCTCGGACACGCCCCCCAACGCTCATGGCTACCCCTCAGATGGCTCAGAAGGAGGGGGCAGTTACTGCGAGCTGAGGCCGGGCCAGCCCCCAACGCCTCCATCTAAGAGCTACGTGGAGAGGCTGAGGGTGGAGGAGGGCCGAGCACCAGGCTCCGCCCCTAGCGATGGAggagaaagcttcaccatgcCTCTGGTGGAGAGCAGTTCGTGCTTCAGACCCGGGCGGTACCAATCAACCCTGCTTCCTGCAGAGAATAAGCCCCTGGAGATGGGGGTCCTGAAGAGGGTGAAGGAACTGCTGGCTGAGGTGGACCCTAAAACAGCAGCCAAACACATCACCAAGGCTGACTGCATGGTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAAAGGATGATGGGAGTTAGTTCGGGGCTGGAGTTGCTGACTCTACCACATGGCCATCAGCTGAGACTGGACCTGCTCgagagGTTCTACACCATGTCCATAATGATGGCGGTGGACCTGCTGGGCTGTACGGGCAGTACGGAGGAACGAGCCGCTCTGCTCTATAAGACCATCCAGCTGGCAGCCGAGCTCAAGAGCACCATGGGAAATATGTTCGGATTCGCCGCCATCATGAGAGCGCTGGAACTTCCGCAGATCTCACGCTTGGACCAGACGTGGATGACGCTGAGGCAGAGACACACGGAGGGAGCCATCTTGTACGAGAAGAAGCTCAAACCCTTCATGAAGGGCTTAAATGAAGGCAAAGAGAGCTCTGTGCTGTCGAGTACGTCTTTCCCACACGTGGTGCCCGTGTTGTGTCTGTTGGAGAAGGGCGTGGCCGTGGGGGAGGGGCCAGAGCCGTGGGATGCTTCAGAATGTGGCGTGGACGTGGTCATGAGCCACCTAGAGGCAGCACGCAGCATTGCACACCACGGAGGCCTGTACCACACCAACGCCGAGAGCAAGCTTCACGacttccaggagagagaggaagtgtcGGAGATCTTCTGCACGGAATTCCAGATGAGGCTGCTCTGGGGAAGCCGAGGTTCTGAGGGGAGCCAGAGCGAACGCTACGAGAAGTTCGACAAAGTCCTCACGGCTCTTTCGCACAAGCTGGAGCCTCCTGTACGCCACAGCGAGCTATAG
>XM_034312604.1
ccccacctCCTCCTTTCATCCGAGAGCGATGAGGTAATCCCTGCCAGCTCTCTGAAGCATAGACAGTGCGGCTCTGTGCTCACACACTCTTGTACGTATCCTgagtgtgtgcgtctgtgtgtgcatgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgagtgtgagcgaCGAGGGGCATGACCCGGACCTTCTAGTGGACCCTAAGACGAAAAAGAGAACTGGATAGAGGGAGacaggaggaggaaaagaggaagcatGACGGAGAGATGCAGTCTGTGGAGCGCCCTGTCTGCAGCCGCCTGCTGCTTCTACAGGGGATCGTTCATGCagttctCCAAGGAGAAGTACCTGTTGGAGTCTCCCCCAGAGAAGCTGAggaaggagctggaggaggaacTCAAACTCAGCAGCAGTGACCTGAGGAGCCACGGCTGGTACCATGGCCGCATCCCacgagagGTGTCGGAGACGCTGGCTCTGCGCAGCGGGGATTTCCTGGTGCGAGACTCTCTGGCCAACGCGGGCGATTACGTGATCACGTGTCGCTGGCAGCAGGAAGTGGTGCACTGCCGCATCAGTAAGGTTCTGGTGAAGAGCGGACAGACGAAGGTGCAGTTCCTCCTGGAGGACGAGACCTTCGACTCGCTGCCCACTCTGATCCGGCACCACGCTGGCACCGGCCGGCCCGTGTGCCCGCGCTCCGGCGCTCAGCTGCTGTGCCCCGTCAACCGCACGCTGCCCCTCAGGTACCTGGAGGCCACGTTTGCCCTGGCGAGCGGGAGATCGGGGTCACATTCACCATCCGCTCAGCGGGGGGCGCACATCAAGAGACGCAGCGTCACCATGACGGACGGCCTGACCACCGAGAAGATCATCCCACACAGTCCATCCACAGTTCACCATAAAGACGCCATGAGGAACTGTGCGCTCAGTATGGACCAGATCCAGGAGATGCGCTGTCCCCTGTCCCCTGTAGGAGAAGCTCCTCTCTCACCTGCCTACACCTCCATTTCCCGTCACAGACATGGCTCAGGTGGGCGTGTCTTAGCCGTCATTCCACCTTCGCCGGTGATGCGACGATCCAGCGAGCCCCAcctctccccctcctcctccagtAACAATGTCCCGTGCTCGGACACGCCCCCCAACGCTCATGGCTACCCCTCAGATGGCTCAGAAGGAGGGGGCAGTTACTGCGAGCTGAGGCCGGGCCAGCCCCCAACGCCTCCATCTAAGAGCTACGTGGAGAGGCTGAGGGTGGAGGAGGGCCGAGCACCAGGCTCCGCCCCTAGCGATGGAggagaaagcttcaccatgcCTCTGGTGGAGAGCAGTTCGTGCTTCAGACCCGGGCGGTACCAATCAACCCTGCTTCCTGCAGAGAATAAGCCCCTGGAGATGGGGGTCCTGAAGAGGGTGAAGGAACTGCTGGCTGAGGTGGACCCTAAAACAGCAGCCAAACACATCACCAAGGCTGACTGCATGGTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAAAGGATGATGGGAGTTAGTTCGGGGCTGGAGTTGCTGACTCTACCACATGGCCATCAGCTGAGACTGGACCTGCTCgagagGTTCTACACCATGTCCATAATGATGGCGGTGGACCTGCTGGGCTGTACGGGCAGTACGGAGGAACGAGCCGCTCTGCTCTATAAGACCATCCAGCTGGCAGCCGAGCTCAAGAGCACCATGGGAAATATGTTCGGATTCGCCGCCATCATGAGAGCGCTGGAACTTCCGCAGATCTCACGCTTGGACCAGACGTGGATGACGCTGAGGCAGAGACACACGGAGGGAGCCATCTTGTACGAGAAGAAGCTCAAACCCTTCATGAAGGGCTTAAATGAAGGCAAAGAGAGCTCTGTGCTGTCGAGTACGTCTTTCCCACACGTGGTGCCCGTGTTGTGTCTGTTGGAGAAGGGCGTGGCCGTGGGGGAGGGGCCAGAGCCGTGGGATGCTTCAGAATGTGGCGTGGACGTGGTCATGAGCCACCTAGAGGCAGCACGCAGCATTGCACACCACGGAGGCCTGTACCACACCAACGCCGAGAGCAAGCTTCACGacttccaggagagagaggaagtgtcGGAGATCTTCTGCACGGAATTCCAGATGAGGCTGCTCTGGGGAAGCCGAGGTTCTGAGGGGAGCCAGAGCGAACGCTACGAGAAGTTCGACAAAGTCCTCACGGCTCTTTCGCACAAGCTGGAGCCTCCTGTACGCCACAGCGAGCTATAG

Function

symbol description
sh2d3ca Predicted to enable guanyl-nucleotide exchange factor activity and phosphotyrosine residue binding activity. Predicted to be involved in positive regulation of peptidyl-serine phosphorylation. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human SH2D3C (SH2 domain containing 3C).

NR:

description
SH2 domain-containing protein 3C-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K23690 SH2D3C; SH2 domain-containing protein 3C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942654.2 True 6161 mRNA 0.47 13 23566714 23618521
XM_026942655.2 False 3021 mRNA 0.56 12 23566715 23615457
XM_026942657.2 False 2343 mRNA 0.59 11 23577525 23615457
XM_034312604.1 False 2268 mRNA 0.59 10 23577525 23615457

Neighbor

gene id symbol gene type direction distance location
LOC113543956 gpr21,LOC108433543,LOC107686419,LOC101884949,LOC107744074,LOC107597614,LOC107595548 coding upstream 220906 23342796 ~ 23345808 (+)
si:ch211-243g18.2 LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290 coding upstream 334679 23220145 ~ 23232035 (+)
ndufa8 ndufa8,LOC107686420 coding upstream 397197 23163709 ~ 23169517 (+)
rbm18 rbm18,LOC107686423 coding upstream 445007 23104677 ~ 23121707 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding upstream 521636 23040466 ~ 23045078 (+)
urm1 urm1 coding downstream 5616 23624137 ~ 23640347 (+)
cercam cercam,LOC107744239,LOC107597609,LOC107685123 coding downstream 44098 23662619 ~ 23676630 (+)
sardh sardh coding downstream 65029 23683550 ~ 23721518 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding downstream 136596 23755117 ~ 23777033 (+)
swi5 swi5 coding downstream 162835 23781356 ~ 23786783 (+)
G273900 NA non-coding upstream 168183 23396808 ~ 23398531 (+)
G273880 NA non-coding upstream 233165 23286000 ~ 23333549 (+)
G273865 NA non-coding upstream 286925 23261046 ~ 23279789 (+)
G273719 NA non-coding upstream 430882 23135579 ~ 23135832 (+)
LOC117599346 NA non-coding upstream 492776 23068937 ~ 23073938 (+)
G274161 NA non-coding downstream 57122 23675643 ~ 23677227 (+)
G274186 NA non-coding downstream 233476 23851997 ~ 23852218 (+)
G274192 NA non-coding downstream 241303 23859824 ~ 23860703 (+)
G274193 NA non-coding downstream 250333 23868854 ~ 23869197 (+)
G274239 NA non-coding downstream 327095 23945616 ~ 23946507 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 180607 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 292061 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 421147 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 901144 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 1191839 22369256 ~ 22374875 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 319457 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 484552 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 607633 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 862078 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 911457 24529978 ~ 24639642 (+)

Expression


Co-expression Network