bnip3lb (bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042)


Basic Information

Item Value
gene id bnip3lb
gene name bnip3lb,LOC108277095,LOC108427248,LOC103036208,LOC107687791,LOC107561399,LOC107678042
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22291081 ~ 22310553 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942658.2
ATAGGAGCTCggcgtgcgtgcgcgcgcgcgtgtatGCTGGCAGTTGTACGCGAGCCTCCGTGCAGAGACACGATGTCCGACGCTGCTGCTACACGAAACACAGGAGAGCCGGGATTAAACGGCTCGTGGGTGGAGCTCGAGCTGAACAGGAACTCACCCGAGACGTCGCAGGCCGTCGCTCCGGGCATGTCCAGTTTGGCCCAGGTCGTTGAAGAGGATGACGGGATAGTCGGAGGGCTGGAACACGTgccttcttcttcctccatcCATAACGGAGACATGGAGAAGATCCTGCTGGACGCACAGCACGAGTCCAGCCGCAGCAACTCCTCCTGCGACAGTCCACCACGTCCACACAGTCCTCAGGATGAAGGTCAGATCAGCTTTGACGTGGACAGAGGAGAAAACCAGgaggcgCTGGAAAAAATGAGGGATGATGAAATTCTGATGAAGGACCCGGACTGGGTGGCCGACTGGTCCAGCAGACCCGAGAACGTTCCTCCCAAGGAATTCCATTTCCGTCACCCTCGGAGAGCCGTCACACTCAGCATGCGGAAAACTGGAGCCATGAAGAAAGGAGGGATCTTCTCTGCCGAGTTCCTCCGAGTGTTTCTCCCCTCACTGCTGCTCTCACACTTACTGGTCCTGGGGCTCGGggTGTATATCGGGAAGAGGTTGACGACGCCCCCCGCCAGCTCGTTTTAAGCATCGAAGTGTAGAAGCGCCTCAGCCGTGGCTCGTGTGGATTTGAGAGAGTGTCGCAGTTTGTACAAGAAACGTAGCCCCCTGCTCACCccataatcacattttatttttttaattgtctttcTCATCCACCTCTCCTTTTACATTGGTACAGTCCATTTCTGCATTGCTCGTGTTCTGCTTGGCCTAAAGTGCCATAAGAGACCAGGAGACCGATAAACGCGCTATTATTTTTCCTCTGTTCTGTATTGTCATGAGTGATTAcagttgtgttgtgtgttcagtgttgtgGGGGTGGATACCGAGGGGGCGGAGTTTAAACCAAACCCGTGTGATCCCAGAAAGATTCCACTCAcaaaattagttaaaaaaaaaaaaaaaaaagccggggatcaattaaagtaaatatatcAGCATGCGTTTATCGTAGATTTTCCTTTATAGCTTATTGAGGTGTTTCAGGTTTATTTagtctttttaatttatttttaaacctgcCGTATTTTCTGGACTCCTTTTGCAGTGCGGTGATTGAAACAATTatcatttctgcatttttttttttcattattatatgCGCATTTATACATACATGCTAATCCAGCAGTTATGGTAATTAACAATATCCTTAATTAACATTATCAAACCAGCACAAATTCTCCCGATATTGATTTTATAAGGTCTGGAAGGATGTATTTCCGAGGCTAAGATCAGGACTGTAGCAAAAACTATATTCCAGCAACACTAATGAGACGGAAGCGAAACTAGACCCCACCTTTAAATGCAGtccaaatgaaacattttaattaatatgacTTTAGTGATGATGTGaccttgtcatttttttttttttaaattctgagcATCTTTTCTGGAAAACCCGGTATGTATCTGTAAGACCCAGATATAGGCGAGACCTGTTACATGTGAAGTGTGAAATTATTGTGATGTATTTAAATTTGCGTGACAGTCGATCGGTGTGAGATGATGTGTGGAAAGAGATTGTCATTTGTCatgtctgttgtgtttgtgttgcttcatttttttatttttttttccttttgtcttttCATTATCGGCCGTTTCTTCTGCTCCAAAAATAGCTCCACTACTAAGTGGCTTGTTGCAGTAAAACCGAGTAAAAtattgctataaaaaaaaaacccacactttTTGTCGAGCTTGTAAACTAGCATCTAATCTGTAGGTTTCCTTATTTGGTTCCTCAGTATTAAAGATTATATTCTGGAGATTATATTCTTTCAACTCTGCATAACTTTACTTACAAGTTTAATATATATGAACTTTGCTCCAATAtcagaaaaaaagtattttccaGACCTGACTTTACACTCAGCAATCAGAGAGAGGGGTCTAGATCAGGGGTTCTTgaactttttataaaaaaaaaaaaaatttaaaaatgcagagTACATATTTTTACAAACATGCGCTAACAATTGTTTAAATGTATCcagtaatatttttttgttattttaatttctgaacTTCTCACCCATAGAACCCAGTTTTATTCAAATTGTCATTAGATCTGATTTGACGTTAGTTATAGATGCAATAACTTTGATAATTGTGGGTTGTCATGTTCACtgctataataaaataaaaaataaaattgcagaCTCCCTGTCTACGCTTCACACGCCTCTTTTAGAACCAGGGGTCAAGATACTAAGCCATTTTTTTAtctctaatattttttttatggtgaATAGTTTGAAATAGCTTGGAGTAACGCACCTGACAACCCATAGTCAGCGCAATGATACACATTTGGTGAACAAACCACGCCCTTATCAGATATAACACTGCAGCTAGAATGTGTTTCAACCAGTCAGATTGCGTGGTTGGAACTAACTTTTTATAACTGATGTTAGCTTGCGAATGCTCAACTCTTAACGATGTTCAGTGAAGGCTGGTTTATACCTGCTGTTAACTATGCATATGCGTACGCAAGATGGCCGCCACGCGTATCCTGAGGTCGTTTGGTGCATCGCTTGTGCACGTCCTCAGAAATGAACTCGACGTGTGTAATATTAACGTACCTAGTGTAGGCggtatagcaccatgtgacactgtgtccaCAACTcaataaacaaactagcattgtgtctcaaatcgcatacttaTGTAATAATCTAGACCGTTATGGAGTACTAACAGTTTTCCTATTAAAGTTggtgtttgatttaaaaaaaaaaaaaaaaaactcttaaacCTACCAAAAGGACTGTTTTGAGTACCAGTCTTCTGGCTtgtctagattagtaaatatttttggatGTACAATGAGGGGTTTTATTTGAGAcacagatcatgacaacaatctcGCAGACAGCAGAAAGCTTTAAAGAGAAATAGAGCTTGTAGTTGTGTTTAACATTGCTGTTcatgaaatcgctaaacattacCGTTTGACTCGGAAACCAGATGACCGGAGATGTTTTGGCTCAgacgtgccatctagtggacgtCATTtctaatcctccagatgtacataagatacgcaggcgagtgtgtgaacgATGCTGTGTGCCCACGTCTGTGTGGTGAAAGTGAAGTGTACTTGCATTTTAAATAGTGTAAGACAGTCATATTATAGCAGGGTCACATCTTTTGTTCATGGATATCGAGCTAGATTTGCAGATCAAGATGGTGAGCTGAGGCACTTTAAATGGCATTAATGTGGAATGTACTGGTTTTTATTCGCAGGTAGTGTTAAAGGAATGGtttgggaaaaaatggaagTAACTAATGAATGTTTTCCCACTTAAACCAAATGTACTTGATAAGTCAAGACATCCGCTTTGCTTTAGTTTTGTACTGAAGCTACGAGGGATGGAGGCTAACAAGTAACGGAAATCACCCAAAAATCGTTTCTGTTAATATCTTTCTCAAAATCTGATATGTGTTTTGTAGTAGTGTGGTGTAGGACACAGTGGGACTATTGAATAAGTGCAGTCTATTGTACTCGGAACTTGGAAAAACCAGCCTTCCGACATGGAAAAGTGCAACGGAGAGGTCGTTCAACTCTGAATGCCAAGTCAGCAACTCAGGCAACATCCACCTGTAGCCTGAGTTCTCTGACATAAACACACCAGACGTCACAACAATATGGCGGCGCTCACACAGTCAACAGAAATCCTTTCGCATTCTTTTCTGTTTGATAAAACTTGGCTTTACTTGATATGTAGcttttgtgaaaatgtgtttgaCAGGTTTAGGTTTGTAACAGAATTCTTTTGATTTCAGCCCAATTTTACTACCGTGATAAGAGCATTGTGATACCATTTTTATGAGCAAAGGTGAACCGAACACTTGACTTAACATACGTCATTTCTCATCGTTAATCATGCAGATCTTATTAATGTGTTTCTCAAATTCACAGATTAGGCATACCAATATGACCTTGCAAAGACTCGAAGTACTGGTACGCTTTTAGATCTCAGGGAAAATTGACCTGGAACTTTCCGAGTACAATGGATTTCAGCATTACAGTCaactataaacatgaacaaaacttcaTCACGTAGCTGAACACTGGAATGCTAATGGAGGCGGCCATGTTGTCTTAGGATGCTTTCACACTGTCTTTTCTGACCCGTCAGCTCACGCTTTACATGTACtccctttttgcttttttttttgtttttttcaggtcACAGCAGAGCtttcaaaagttaaaaaaaacgtTCATCTTTTTAGAAAAACGTAGCATAACGTCAGGcactcctgaccaatcagatcacaagCTGGGGGGAAGCGAGAAATACAAACATGGAGGATAAAGTGCTGATAAAAAATGAGTTTtgttagtgagtgaatatgagatttacaaaaatgtttcGTTGCTAATAATCCAACGTTCCATAACAGCGTGTGTATTTTTTTAGGATGTTTACCTGTACGTGACGTGGCATCGCACATTAACTGTAGTAAGCAAACAGTCATCCgctcaaattctcttgattttcaGCCTCACGGTGACAAACAGCTTCGTCGTCCCCAGAGTTACACCAAACTTTATTTCATCTGCGTTACTGAGAATAATTCATCTAATCTAGAgagcaagctaggctagttagctgatactagctaggactggtAAGTGCGTTGTCATGGTGACAGCTTGCATGCTTTGTctgaaaaagtgtgaaagcagccttgtGAATTAACTACATTTAATATGACTCCGCCCCAAAGATTAAATTGTACATGAaattgtaccagaatgataATACATTTCCACGTTAAACTTAAATCTTTGGTTATGgacagtcactttttttttttttttttttaaataagttgtctgtctgtatctataAATGATCTTAATGATGTCATTTGAAGCACGTATTTGGGCTAagtggaaaatttaaaaaaaagttagcgATTTCGTAATTCTCCGCAGACGAGCAGTATTTTTGTACTTAAACTGTTCATGTGTCCagagacaaaaacatttcatcTGTCTCCAGGAGTGTGATACTGAACATACTATATGATCAATTCAGAATATGAGATCACTTTTCAGCTCATAGCTCGGCattatttacaattaaaatgaaatcaaatgcCACATGAGGCAGCAGTACATGGATTTATATATTTCCTGAAGAAAGTTGCTATGTTCTTGGTCTTCGCTTGTTGATCATAGTAATATggatatttttaagatttttcgCTCATGTCTTGGAGCATATTTCCAGGGAGATATTTTTCCGATATTTTTGCAATTTCTGTAACAGACCATTAACAGTATAACTATTTCACTCTTATTTCAGCATAGTCCTGGTATACTTTAGGGTTCTTCAAGGCTTCTTTAAGGCATTGTTGGATAATTAATGCTTCTTAGATTCTGTAAAACCTTTCAGAACCTTTCTGAGTGTATCTCCTCCTACCAACACGTTCTCAGATATTTTTCTTCTACATCATAGACACATTGTGTCTTAAAGCAAACTTGTGACATTTTTGACAATTTTCCTccgttttttttcttccataaaATCTCCTCATAACCCGGTCTCTTCTTCATCATGCGCTTATTCGCGTCGTATCTCCTCTGTGCACCGTCAGGTCcggtttctttcttttgaattgattctttttttttttttttttttaatgcattattacCTAGAGTTAATGAATTGATTTTGTTGCTTTGTTTAGATTGTGGCTGAGCTAAAGATTACAGTGAGCTGCTTTTGGGTGTGGAGAACTCTTTACCCCTGTCCCTGCACAATTctaatcattttgacattaaaatttaaagaagaaagcatg

Function

symbol description
bnip3lb Acts upstream of or within heart looping; negative regulation of heart contraction; and positive regulation of apoptotic process. Predicted to be located in membrane and mitochondrial envelope. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum; mitochondrial outer membrane; and nuclear envelope. Is expressed in several structures, including brain; optic cup; pectoral fin bud; pronephric duct; and somite. Orthologous to human BNIP3L (BCL2 interacting protein 3 like).

NR:

description
BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0045822 negative regulation of heart contraction biological_process
GO:0001947 heart looping biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942658.2 True 6015 mRNA 0.39 6 22291081 22310553

Neighbor

gene id symbol gene type direction distance location
ppp2r2ab ppp2r2a,ppp2r2ab,LOC108277296,LOC108427249,LOC107744137,LOC107720666,LOC107678035,LOC107687801 coding upstream 2048 22272066 ~ 22289033 (+)
LOC113543961 NA coding upstream 817963 21468412 ~ 21473118 (+)
LOC113523962 pla2g1b coding upstream 824938 21462543 ~ 21466143 (+)
LOC113544185 pla2g1b coding upstream 839008 21447235 ~ 21452073 (+)
prkab1a prkab1 coding upstream 845817 21435902 ~ 21445264 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding downstream 4741 22315294 ~ 22351716 (+)
igsf9a LOC108277156 coding downstream 69367 22379920 ~ 22426821 (+)
vsig8a LOC108277295 coding downstream 396408 22706961 ~ 22766275 (+)
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding downstream 456673 22767226 ~ 22780287 (+)
itga2.2 itga2 coding downstream 482025 22792578 ~ 22837618 (+)
G273226 NA non-coding upstream 252932 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 308890 21981979 ~ 21982191 (+)
G273248 NA non-coding upstream 328214 21962664 ~ 21962867 (+)
G272940 NA non-coding upstream 798409 21479900 ~ 21492672 (+)
G273473 NA non-coding downstream 251551 22562104 ~ 22562325 (+)
G273600 NA non-coding downstream 490528 22801081 ~ 22840120 (+)
LOC117599377 NA non-coding downstream 681989 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 726856 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 737368 23047921 ~ 23062345 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 257084 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 812201 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 929337 21359519 ~ 21361744 (+)
G272408 NA other upstream 1748127 20540325 ~ 20542954 (+)
G272374 NA other upstream 1861938 20423399 ~ 20429143 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 58703 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 311875 22622428 ~ 22665570 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 739259 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 934007 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 971008 23281561 ~ 23386107 (+)

Expression


Co-expression Network