nt5c2l1 (nt5dc4,LOC108435390)


Basic Information

Item Value
gene id nt5c2l1
gene name nt5dc4,LOC108435390
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20884027 ~ 20901267 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942675.2
TAATGGGGCCCCTCACGCAGATCTGCGGTACGCTCGTGCGCACTGCAACCACTCAGACAGGCGTGATGTAAACGTGAAGCTTCAGTTCAAATAGTGCAGCTGGAGCTGAGGGGGGACAGAGACACATCGGACACACGGCAGCATGGATGGACACGGGGGCGAGCACGAGAACGTGGACGTGCACGCGGGGAAAGGAGACCTCCAGCACAGGGTGTTTGTTAACAAGAGTGTGAACCTGGAGAAAATAAAGTGCTATGGCTTTGACATGGACTATACTCTTGCTGTATACAAATCTCCTGAATATGAAGGACTGGGTTTTGAGATGCTGAGAGACAGACTGGTGTCCATCGGCTATCCACACGAGCTGCTGCGCTACACGTACGACCCCACCTTCCCCACACGAGGTTTGGTGTATGACACGACCTACGGAAATCTGCTAAAAGTGGACTCGCATGGAAACGTCCTGGTGTGCACACATGGCTTTGTTTACCTGAAAGGacAGGAGATTCAGGAGTACTACCCCAACGGATTCATCCAGAGAGATGACACGGAGCGATTCTACATCCTCAACACACTCTTTAACCTCTCAGAGACGTACCTGTACGCATGCCTCGTGGACTTCTTTACCAACACCACCAGATACGAGAACTGCCAGAAGGGATTTAAGCACGGTGACCTTTTCATGTCATTCAAAAGCATGTTTCAGGACGTGCGAGATGCAATGAATTACATACATGACACGGGCTCTCTGAAGGAGAGAACACTGCAGAATCTGGAAAAATATGTGATCAGGGATCCTCGAATTCCCCTGATGCTGACCCACATAAAGAAGGTTGCAAAGGTGTTCCTGGCCACCAACAGTGACTACAACTACACCGAGGCCATCATGAAGTATTTGTTAGATTTTCCACCTGGTTCGAAGTACCCAGAAAAGTCATGGCGGGTGTTTTTTGACCTGGTGGTGGTGGACACAAGGAAGCCGCTGTTTTTTGCTGGGGGGACGGTGCTGAGACAGGTGGACACGAACACGGGGAAGCTGAAGATAGGAACGTACACAGGAGACCTGCAGCACGACACTGTCTACTCTGGAGGTTCCTCAGATATCATCTGTGACTTGCTGGACGTGAAGGGGAAAGAGATCCTCTACGTGGGAGACCACATATTCGGGGATATTCTGAAGTCTAAGAAGCGTCAGGGTTGGAAAACCTTCCTGGTGGTGCCTGAGCTGACCAAGGAGCTCCAGGTGTGGACGGACAAACATGGAATGTTTGAGGAGCTGAGGCAGCTGGATATTTACCTCGCTGAGCTACATAAGGATTCAGACTTCGGAAGTGGATCAGATGTTAATCTCATCCAGAGCAAGGTGAAGaTGGTGACCTATGGGATGGAGCTGTGTTATGGAAAGATGGGAAGTCTGCTACGCTGTGGCTCCACAAAAACCCTGTTTGCCAGCCAGCTGCTGCGATATGCCGACCTCTACGCTGCGTCCTGCCTCGACCTGCTGCACTACCCCCTCGGCTACCTGTTCAGAGCGCCCTTCGTCCTgATGCCCCATGAGTCGGCTGCGGACCCTCACACCAAAGACCTGTCTGTCCCGGATCTCTCAGCCATCCTCCGAAACACATCCATCAAGAGGCGTTGTCAGTGTGAAGGTGAGAGCTGTGGGCTGGAGAACTGTGAACAGAACAGGAGAACGCAGCCGTAACTGTGGAGACGAGAGCGGCAGTGTTTTCATTTGAATGCCTGTACATTGAATTTTTCAGTTGGCTTAGAGTTGACTGTTAAACCCAGAGAAGCCACGCAATAAACTGCACCTTCTCACCTTATAGGAATACTTTAcacaaaaatgctaattaaaccTAGTAGAAGTGAACGTATTAGCAGTTAAATACCGCTGTTGTAACTGGCCACTGTTGGACATTAGTAATGATGAGTTCTTTTGAAGGATGAACTCTTCCTTTGAGCtctttaaatgatttttgtaCAGTAATTTGCCTGCTTGAATGTGAAGATTTTAACCTTTTGATGAGCaaagcatttaaaatgtcacatgatGGACAGTTCATGTTATGTCGaaattggattattttcatataacagcacagcccacAGTGATTTACAGcgctaacaattttttaaatttattaatgaatgacatttttgc

Function

symbol description
nt5dc4 Predicted to enable 5'-nucleotidase activity. Predicted to be involved in dephosphorylation.

NR:

description
cytosolic purine 5'-nucleotidase-like

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942675.2 True 2164 mRNA 0.48 18 20884027 20901267

Neighbor

gene id symbol gene type direction distance location
slc2a11l LOC108277148 coding upstream 3858 20871377 ~ 20880169 (+)
ska1 ska1 coding upstream 13484 20864565 ~ 20870543 (+)
smarcad1b LOC108277297 coding upstream 19777 20844325 ~ 20864250 (+)
stard7 stard7,LOC107713384,LOC107687872 coding upstream 122359 20750173 ~ 20761668 (+)
pcyox1 pcyox1 coding upstream 173001 20702515 ~ 20711026 (+)
gnaz gnaz,LOC107555529 coding downstream 58795 20960062 ~ 21049972 (+)
rab36 rab36,LOC108427235,LOC107555516,LOC103042607 coding downstream 161418 21062685 ~ 21074114 (+)
depdc5 depdc5,LOC107686465,LOC107713378 coding downstream 173386 21074653 ~ 21106826 (+)
ywhah ywhah,LOC107562560,LOC107713377,LOC107555530,LOC107688000 coding downstream 207391 21108658 ~ 21115104 (+)
slc5a1 slc5a1,LOC107713298,LOC107744177,LOC107688629 coding downstream 228019 21129286 ~ 21147233 (+)
G272470 NA non-coding upstream 134380 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 146527 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 158833 20659603 ~ 20725194 (+)
G272427 NA non-coding upstream 223733 20565033 ~ 20660294 (+)
G272426 NA non-coding upstream 319963 20562176 ~ 20564064 (+)
G272770 NA non-coding downstream 26355 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 89076 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 578633 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 586845 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 1061397 21962664 ~ 21962867 (+)
G272408 NA other upstream 341073 20540325 ~ 20542954 (+)
G272374 NA other upstream 454884 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 485080 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 940522 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 1035201 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 458252 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 574820 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1021284 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1467989 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1721161 22622428 ~ 22665570 (+)

Expression


Co-expression Network