paqr3b (paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080)


Basic Information

Item Value
gene id paqr3b
gene name paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23040466 ~ 23045078 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942730.2
GCGTCATCGCTTATTGTCGCAGGATTTTCGCGTCATATAAACACAGCGGCTAATATGGCGGTcgttaataatgaattaatgaaaacaGCTCCGGTGGACATATAAAGCCACTCGAACAAACCTGTACCTTAAGTGCTGAAGCGGAAGCTGATGAAGCACGATGCCTCAGAAGATCCTGAAGAGTGCTCATTACATAGAGCTGGGCAGCTATCAGTACTGGCCCGTTCTGGTGCCCAGAGGGATCCGACTCTACACTTATGAACAGATCCCCGTGTTCCTGAAGGAGAACCCGTACATCACAGAAGGGTATCGAGCACATCTGCCTTCTCGGTTATGCCTGAAAAGcatatTCATTCTGTCCAACGAGACGGTGAACATCTGGAGCCATCTGCTGGGCTTCGTGCTGTTCTTCATGCTGGGGGTCAATGACATGTCCACAGTGTTACCGGCTGTAGGAGCCTCCAGAGAGGACTACGTCATCTACTCCATAGGGCTGTTCTGCTTTCAGGTGTGTATGCTGTGCTCAGTCGGCTATCACCTTTTCTGCTGCCATCGCTCGGAGAAGACGAGCCGCCGCTGGCTGGCCCTGGACTACGCCGGGATCTCGGTGGGAATTCTGGGATGCTACGTCCCGGGAGTGTTCTACGCCTTCTACTGCGACAGTtTCTGGAGGCAGGTGTACCTGATCACAGTTCTGGCTCTGATCCTGGCCGTGTTTTCGGCTCAGATCCACCCGCTGTACCACACTCAGGAGTGGAAGACGCTGCGCTCGACCATTTTCTGCTCCGTGGCGGCGTACGGCATCATCCCCGCCTGCCACTGGGTTTGGCTCAACGGAGGTTTTCACTCTGAGATCGTGCAGGTGTTTTTTCCACGAGTCATGGTCATGTATCTGATCGCTGCCTCAGCCTTCCTGTTCTACATCAGTAAAGTCCCCGAGCGCTACTTCCCAGGGCAGCTGAACTACCTCGGTGCCAGTCACCAGCTGTGGCACGTTCTGGTGGTGCTGATGTTCTACTGGTGGCACCAGACCGCCGTCTACATCACACGCTACAGACACAGCGAGCCATGTCCGAGGTACAACTAGTTCCGCTCTCACTGTAGACTTCAGCACCTCTCCTGCTGTTTATACTCTAGCACGAGGATGCAAAACGATGTCCTAGCTCATCTGTAACATGCTATAACGTGTGCCTGGAGAAGGATCCGGAaacatggaataaaaaaaaaaaactggatttttagatattttccTCTTTAG

Function

symbol description
paqr3b Predicted to enable signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PAQR3 (progestin and adipoQ receptor family member 3).

NR:

description
progestin and adipoQ receptor family member 3-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942730.2 True 1258 mRNA 0.52 7 23040466 23045078

Neighbor

gene id symbol gene type direction distance location
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding upstream 917 23019928 ~ 23039549 (+)
rasgef1bb LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538 coding upstream 24240 23005004 ~ 23016226 (+)
snx18b LOC108276851 coding upstream 82865 22948893 ~ 22957601 (+)
fstb LOC108276855,LOC108433530 coding upstream 176636 22852481 ~ 22863830 (+)
itga2.2 itga2 coding upstream 202848 22792578 ~ 22837618 (+)
rbm18 rbm18,LOC107686423 coding downstream 59599 23104677 ~ 23121707 (+)
ndufa8 ndufa8,LOC107686420 coding downstream 118631 23163709 ~ 23169517 (+)
si:ch211-243g18.2 LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290 coding downstream 175067 23220145 ~ 23232035 (+)
LOC113543956 gpr21,LOC108433543,LOC107686419,LOC101884949,LOC107744074,LOC107597614,LOC107595548 coding downstream 297718 23342796 ~ 23345808 (+)
sh2d3ca sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235 coding downstream 521636 23566714 ~ 23618521 (+)
G273683 NA non-coding upstream 1850 23037409 ~ 23038616 (+)
LOC117599377 NA non-coding upstream 45669 22992542 ~ 22994797 (+)
G273600 NA non-coding upstream 200346 22801081 ~ 22840120 (+)
G273473 NA non-coding upstream 478141 22562104 ~ 22562325 (+)
G273226 NA non-coding upstream 1002317 22037839 ~ 22038149 (+)
G273644 NA non-coding downstream 2843 23047921 ~ 23062345 (+)
LOC117599346 NA non-coding downstream 23859 23068937 ~ 23073938 (+)
G273719 NA non-coding downstream 90501 23135579 ~ 23135832 (+)
G273865 NA non-coding downstream 215968 23261046 ~ 23279789 (+)
G273880 NA non-coding downstream 240922 23286000 ~ 23333549 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 374896 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 665591 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 1006469 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1561586 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 1678722 21359519 ~ 21361744 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 4734 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 199482 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 236483 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 892900 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 1057995 24103073 ~ 24112853 (+)

Expression


Co-expression Network