srek1ip1


Basic Information

Item Value
gene id srek1ip1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24306452 ~ 24309825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942731.2
TCCGGACTGATTTATGCGACGGATTGAATATACCGGAAGTTGTGCTGTTGACGAAAATTCGAGTAATTTCGTGTTAATGGCTCTTCCAGCAGGTGTGAATAAGGACAACATCCGCGCTGGGTGTAAGAGATGCGGCTATCCCGGTCACCTCACGTTCGAGTGTCGGAACTTTGTGCGTGTGGACCCGAGGAAGGACATCGTGCTGGACGTGAGCAGTACGAGCAGCGAGGAGAGCGAGGAGGAAGGACAGCAGGAGGTCCGGAAGGAGAAGATCCTCGGGAGCAGCCGCTCTAAAGATTCCCgaagagagaaacacaaaaagagGAGTAAAGAGCGATCTCACCGAAAGACAAAgaagagGTCTCATTCAtccagtgatgatgatgaggaagaggtgagcaggaagaaaaagaagaaaagccaCAAGAAGAAAGGCAAAAAGGAgaagcgagagaaagagaaacagcgCGTGAAGAAGCGTAAGAAGAAACACACGCAggcttcatcatcatcatcatcatcatcatcatcgccctCTTCCTCGAACAGCTCGAGTGACTCCTCAGATACAGACTGAAGCTCCTTCTGTTCCAGATCTTCATCTACACTTCATCCAGCAAAACAAATCAACTGCCATGAGACGACGTTATCATCTAAACGACaggctgagtgcaaaagtttgtgcacccttgGGACTAAAGGAAGACAGATGACTCTGCTTTAGTGTTCGTTTTCTCCAACATTCCCTCATTATTACAGCTTcctaaacttttgcactcagctctCTGTGTTAAAATGTTACTGTTTCAGTAGTGAAttatttccatttcttttcctCTGTGATCATATATTTCTTATTGTTGTTTGCTATATTTTTCGCAGTATCGTTAGATTTtgtatagaaataaaatgataaaaattca
>XM_026942732.2
TGGCACTGTGTGCTGTCTTGTCAATATTTCCTTCCGGACTGATTTATGCGACGGATTGAATATACCGGAAGTTGTGCTGTTGACGAAAATTCGAGTAATTTCGTGTTAATGGCTCTTCCAGGTGTGAATAAGGACAACATCCGCGCTGGGTGTAAGAGATGCGGCTATCCCGGTCACCTCACGTTCGAGTGTCGGAACTTTGTGCGTGTGGACCCGAGGAAGGACATCGTGCTGGACGTGAGCAGTACGAGCAGCGAGGAGAGCGAGGAGGAAGGACAGCAGGAGGTCCGGAAGGAGAAGATCCTCGGGAGCAGCCGCTCTAAAGATTCCCgaagagagaaacacaaaaagagGAGTAAAGAGCGATCTCACCGAAAGACAAAgaagagGTCTCATTCAtccagtgatgatgatgaggaagaggtgagcaggaagaaaaagaagaaaagccaCAAGAAGAAAGGCAAAAAGGAgaagcgagagaaagagaaacagcgCGTGAAGAAGCGTAAGAAGAAACACACGCAggcttcatcatcatcatcatcatcatcatcatcgccctCTTCCTCGAACAGCTCGAGTGACTCCTCAGATACAGACTGAAGCTCCTTCTGTTCCAGATCTTCATCTACACTTCATCCAGCAAAACAAATCAACTGCCATGAGACGACGTTATCATCTAAACGACaggctgagtgcaaaagtttgtgcacccttgGGACTAAAGGAAGACAGATGACTCTGCTTTAGTGTTCGTTTTCTCCAACATTCCCTCATTATTACAGCTTcctaaacttttgcactcagctctCTGTGTTAAAATGTTACTGTTTCAGTAGTGAAttatttccatttcttttcctCTGTGATCATATATTTCTTATTGTTGTTTGCTATATTTTTCGCAGTATCGTTAGATTTtgtatagaaataaaatgataaaaattca

Function

NR:

description
protein SREK1IP1 isoform X1

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942731.2 False 923 mRNA 0.44 5 24306452 24309793
XM_026942732.2 True 952 mRNA 0.44 5 24306452 24309825

Neighbor

gene id symbol gene type direction distance location
lin54 lin54,LOC107744261 coding downstream 32199 24259708 ~ 24274253 (-)
LOC113543977 NA coding downstream 112579 24118023 ~ 24193873 (-)
LOC117599328 LOC107690397,LOC107716059,LOC107572820 coding downstream 135238 24165377 ~ 24171214 (-)
ptbp3 ptbp3,LOC107658670,LOC107744247 coding downstream 211131 24041031 ~ 24095321 (-)
ak3 ak3,LOC107658667,LOC107685112,LOC107744244,LOC107713310 coding downstream 350402 23944375 ~ 23956050 (-)
adamts6 adamts6,LOC107685101,LOC107713302,LOC107744255 coding upstream 68360 24378185 ~ 24454955 (-)
trim23 trim23,LOC107658681 coding upstream 155272 24465097 ~ 24477076 (-)
sgtb sgtb,LOC107558703,LOC107667268,LOC107548671,LOC107705058 coding upstream 191037 24500862 ~ 24509560 (-)
smc5 smc5,LOC107726549,LOC107734934 coding upstream 348983 24658808 ~ 24697852 (-)
mamdc2b LOC108277069 coding upstream 388966 24698791 ~ 24718235 (-)
G274489 NA non-coding downstream 58895 24245196 ~ 24247557 (-)
LOC113543934 NA non-coding downstream 88774 24216715 ~ 24217678 (-)
LOC117599329 NA non-coding downstream 180245 24125158 ~ 24126207 (-)
G274425 NA non-coding downstream 197004 24108470 ~ 24109448 (-)
G274421 NA non-coding downstream 202350 24103011 ~ 24104102 (-)
G274771 NA non-coding upstream 181641 24491466 ~ 24492114 (-)
G274781 nln non-coding upstream 203463 24513288 ~ 24651673 (-)
G274804 NA non-coding upstream 236375 24546200 ~ 24547152 (-)
G274810 NA non-coding upstream 254817 24564642 ~ 24617704 (-)
G274819 NA non-coding upstream 281415 24591240 ~ 24591960 (-)
LOC113544170 plac8 other downstream 5420 24297476 ~ 24301032 (-)
inip inip,LOC107571239,LOC107658659,LOC107558675 other downstream 53140 24251548 ~ 24253312 (-)
nrarpa nrarp,nrarpa other downstream 443184 23859305 ~ 23863268 (-)
G274342 slc27a4 other downstream 504168 23798359 ~ 23802284 (-)
LOC113544130 rusc2 other downstream 3099282 21189969 ~ 21207170 (-)

Expression


Co-expression Network