sigmar1 (sigmar1,LOC107573076,LOC107653128)


Basic Information

Item Value
gene id sigmar1
gene name sigmar1,LOC107573076,LOC107653128
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18215583 ~ 18218914 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942733.2
TCACCGACTTCACTGGTGGTTTGCCATGCTAGTCTTTTAGCTAGCAGAGGTGTCTGAAGGAGTTTGAATGAAAGTGTGTCAGGTGTTTTTTAGTTGTTAGGTTTTTTAATGTTGCATTGCAGATAATTGGTTTCGACATAATGTTTATAACTAGAAAATTGCTGAAACTCGTGGTGTTTGTCGGAGTGTTGGTGTTAGTCATACAGTACTTACATTACTGGTTAGCCAGTAAACAGTATGTGTTTACAAAAGAGGACGTCGCCAAACTGGCCAAACAGTACGCAGGTCAGGATCATGAGCAGGCATTCTCTAAAGTAGTGGTGGAGTTGCGGAAACGCTACCCGGGCCACATCCTGCCTGACGAGGACCTGCAGTGGGTGTTTGTAAATGCCGGGGGTTGGATGGGCTCCATGTGTTTGCTTCACGCCTCCCTCACCGAGTACGTGCTGCTCTTCGGGACCGCCGTTGACACAAGTGGACATTCAGgTCGATACTGGGCCGAGATATCAGACACCGTAATTTCTGGGACTTTCAGGCAATGGAAAGAAGGATCAACTAAAAGTGAGACTTATTACCCAGGTGACACAATCGTGCACTCGGTGGGCGAGGCGACTTCGGTGCAATGGACTGCAGGGACCTGGATGGTGGAATACGGCAGAGGATTCATTCCATCCACACTGAGTTTCGCGCTAGCAGACACGGTGTTCAGTACACAGGACTTTGTAACACTCTTCTACACCTTTCGTGTATACATGAAGTGTCTGCTACTGGAGGCCAGTACTTTCCTGACTGAAGCTGGTGTCTTCTAAAGACCACAGTGATCTCCAGTGCCATTGTACCACTTCAGTGCCATCCTGTAACAGACTGACATGCAAGAGAACAGACAATCTAAGCTTATGGACTGGACTTTCTCAGGCAAATAATGACAGCCTGCAGAAAAAAGTGAGATGGTTCTCATAACATAAATGACATCTTGATTATCCTACGTTGGGGCAGAGTCTTAATTATTAGTCATTGTACATCCATCAGATGTAAAAATCCAAATCCGTCAGATATAGGAACACCGAATTGTTCATTACTTACAATACCTCACTGAATGCCTTAGACTGTGAAGAATTACTGTCACCAGAATGTTGTGTGAATTGTTTATGGCAATCATTTCTGTCAAGCTTTTCTCCACAATAAAACTTTGTACTGTTCTGTGCTGTTACTTA

Function

symbol description
sigmar1 Acts upstream of or within response to wounding. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in gut; head; muscle; and retina. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 16 and distal spinal muscular atrophy 2. Orthologous to human SIGMAR1 (sigma non-opioid intracellular receptor 1).

NR:

description
sigma non-opioid intracellular receptor 1

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20719 SIGMAR1; sigma non-opioid intracellular receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942733.2 True 1214 mRNA 0.45 4 18215583 18218914

Neighbor

gene id symbol gene type direction distance location
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107554852 coding upstream 457360 17751578 ~ 17758223 (+)
rassf6 rassf6 coding upstream 471987 17728618 ~ 17743596 (+)
lpar1 lpar1,LOC107554848,LOC107723319 coding upstream 526587 17665665 ~ 17688996 (+)
LOC113544058 epha5,LOC108428864,LOC107702602 coding upstream 605998 17552931 ~ 17609585 (+)
plppr1 plppr1,LOC107702599,LOC107653496,LOC107710008,LOC107750956,LOC102776600,LOC106568589 coding upstream 818766 17355099 ~ 17396817 (+)
katnal2 katnal2,LOC107573073,LOC102797751 coding downstream 1854 18220768 ~ 18231104 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 16455 18235369 ~ 18240105 (+)
LOC113543970 LOC108276577,LOC108262336 coding downstream 147156 18366070 ~ 18372136 (+)
si:dkey-88l16.3 LOC108277154 coding downstream 153798 18372712 ~ 18398037 (+)
parm1 NA coding downstream 195673 18414587 ~ 18420080 (+)
G271235 NA non-coding upstream 89791 18124822 ~ 18125792 (+)
G271104 NA non-coding upstream 442203 17769769 ~ 17773380 (+)
G271102 NA non-coding upstream 451054 17759550 ~ 17764529 (+)
G271076 NA non-coding upstream 524722 17689656 ~ 17690861 (+)
G270913 NA non-coding upstream 826604 17361945 ~ 17388979 (+)
G271340 NA non-coding downstream 79208 18298122 ~ 18348384 (+)
LOC117599343 NA non-coding downstream 207158 18426072 ~ 18427190 (+)
G271542 NA non-coding downstream 694343 18913257 ~ 18913627 (+)
G271544 NA non-coding downstream 699095 18918009 ~ 18918576 (+)
G271545 NA non-coding downstream 699680 18918594 ~ 18919467 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1114514 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1126205 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1126284 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1126983 17088529 ~ 17088600 (+)
trnar-ccu_12 NA other upstream 1127062 17088449 ~ 17088521 (+)
G271406 NA other downstream 185355 18404269 ~ 18407498 (+)
G271863 NA other downstream 1022795 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 1157178 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 1270292 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 1563513 19782427 ~ 19786831 (+)

Expression


Co-expression Network