katnal2 (katnal2,LOC107573073,LOC102797751)


Basic Information

Item Value
gene id katnal2
gene name katnal2,LOC107573073,LOC102797751
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 18220768 ~ 18231104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942756.2
GTCACGGAGGCTGCGCGTGCAGCTGGCTGCTGAGTGCATGTCCTGCAGCCAGACTCCACATTTACCTGGAAACACAATGGAGTTGTCATATCAAGCCATCAAAACTGCAAACCAGGCAAGAGAAGCAgacgaATTAAGAACAGAGACCAGAAGAAGGAATTTGCTTATATTAATTTATCATCATTTAATGGAGGAAGGGTATATGGATGCTGCTAATGCACTGGAACAAGAGACCCATTTTGGGTTGCGTAGGTTTGAAGTGTGCGACAATGTTGACTTGGATACAATTCTCATGGAGTACGAAAGCTTTTACTTCATTAAGTTTCAGAAATATCCCAAGCTGACAAAGAAACTGCCAGAACAAGGTGAGAATAGACGTGTTAGAAGCTCCGGTAAAAAGAGGACCCCAAGTGTAACAAAAACACTGCCCAGAATCACAAGTGTTCAGCGTCCGCAGTCCAGGAATGGGATTAAAAAGCAAGAGTCTAAGGCAGCAGGGAAGGATTGTATGAAGTCTGGAACTGAGAACGGAGGATCATATCTCCCAGAGAGCAATGAGTTTGGCCTCAATGTGTCACCCATCATTAGGAATGGAGTTGGCGACGGGACGCAGATGAAGAAGGGTCAACTGTTGGACTACAGGGGTCTCATTCAGGAGGCTATTAAAGGAACTTTTAATGAAACAGCAGCAAACAGCTTGTCCTGTAATCCTGATCCTTCAGAGCGGCTGCTCAAACCCATCAGTGCCTTCTGCGGGATGAACAGCGAGACAAGAGAGCTAGCAGCAGTTATTAGTCGAGATATCTATTTACACAACCCCAACGTGCACTGGGACGACATTATAGGCCTGGAGGCTGCCAAGCGATTAGTCAAAGAGGCTGTCGTCTACCCCATTAAGTACCCTCAACTGTTCACAGGAATTCTCTCACCATGGAAAGGTTTGCTGCTTTACGGGCCTCCAGGCACAGGAAAGACTCTGCTGGCAAAAGCAGTAGCTACAGAATGCAACACAACATTCTTTAACATCTCTGCATCCAGCATCGTAAGCAAATGGAGAGGAGATTCTGAGAAGCTGGTTCGGGTTTTGTTTGAGTTGGCGAGATATCATGCCCCATCCACCATCTTTCTGGATGAGCTGGAGTCAGTGATGGGTCAGAGAGGTGTTGGTCCAGGAGGTGAGCATGAAGGCAGCAGGAGGATGAAGACAGAGCTCCTTGTTCAGATGGATGGACTGGCACGCTCTAACGACCTGGTGTTTGTTTTGGCTGCCTCAAATCTACCCTGGGAGCTGGACCATGCAATGCTGAGAAGACTGGAGAAGAGGATACTCGTGGGTCTGCCTTGTGGTCTAGCCAGAAAGGCAATGATCAATCACTGGCTTCCTCCAATCAGCAATACAGGAGGGGTGGAGCTTCGAACTGAGCTAGACTATGATGTGCTTGCAGAGGAAACAGACGGTTACTCCGGCTCAGATATCAGGCTGGTCTGTAAGGAAGCGGCGATGAGGCCTGTCAGGAAGATTTTCGACACCCTGGAAAATCACAGTGAGGGTCACAGCCATATGCCGCTTGTTAAACTAGAAACTGTGACCACAGCAGATTTCCTGCAGGTCATCGCTCACACCAAACCATCAGCCAGGAACCTGACAGACAAATTCTCTGCCTGGGAGAGAGAGTACGAGTCTGTCTGAGCTTACACTCTGGACTGTGTAGTTTAATATGCTCGTGTACATACTGCACCCAAATCACATCTTCTCAAACTGAACACAGGTTGCATACCATAAAGCAGGACAACAACGTAATATAATACAGAGCCACATTACGTTCTGATAAATGTACAGAAATTggaaataaaaactttaatgttttgta
>XM_026942757.2
GTCACGGAGGCTGCGCGTGCAGCTGGCTGCTGAGTGCATGTCCTGCAGCCAGACTCCACATTTACCTGGAAACACAATGGAGTTGTCATATCAAGCCATCAAAACTGCAAACCAGGCAAGAGAAGCAgacgaATTAAGAACAGAGACCAGAAGAAGGAATTTGCTTATATTAATTTATCATCATTTAATGGAGGAAGGGTATATGGATGCTGCTAATGCACTGGAACAAGAGACCCATTTTGGGTTGCGTAGGTTTGAAGTGTGCGACAATGTTGACTTGGATACAATTCTCATGGAGTACGAAAGCTTTTACTTCATTAAGTTTCAGAAATATCCCAAGCTGACAAAGAAACTGCCAGAACAAGGTGAGAATAGACGTGTTAGAAGCTCCGGTAAAAAGAGGACCCCAAGTGTAACAAAAACACTGCCCAGAATCACAAGTGTTCAGCGTCCGCAGTCCAGGAATGGGATTAAAAAGCAAGAGTCTAAGGCAGCAGGGAAGGATTGTATGAAGTCTGGAACTAACGGAGGATCATATCTCCCAGAGAGCAATGAGTTTGGCCTCAATGTGTCACCCATCATTAGGAATGGAGTTGGCGACGGGACGCAGATGAAGAAGGGTCAACTGTTGGACTACAGGGGTCTCATTCAGGAGGCTATTAAAGGAACTTTTAATGAAACAGCAGCAAACAGCTTGTCCTGTAATCCTGATCCTTCAGAGCGGCTGCTCAAACCCATCAGTGCCTTCTGCGGGATGAACAGCGAGACAAGAGAGCTAGCAGCAGTTATTAGTCGAGATATCTATTTACACAACCCCAACGTGCACTGGGACGACATTATAGGCCTGGAGGCTGCCAAGCGATTAGTCAAAGAGGCTGTCGTCTACCCCATTAAGTACCCTCAACTGTTCACAGGAATTCTCTCACCATGGAAAGGTTTGCTGCTTTACGGGCCTCCAGGCACAGGAAAGACTCTGCTGGCAAAAGCAGTAGCTACAGAATGCAACACAACATTCTTTAACATCTCTGCATCCAGCATCGTAAGCAAATGGAGAGGAGATTCTGAGAAGCTGGTTCGGGTTTTGTTTGAGTTGGCGAGATATCATGCCCCATCCACCATCTTTCTGGATGAGCTGGAGTCAGTGATGGGTCAGAGAGGTGTTGGTCCAGGAGGTGAGCATGAAGGCAGCAGGAGGATGAAGACAGAGCTCCTTGTTCAGATGGATGGACTGGCACGCTCTAACGACCTGGTGTTTGTTTTGGCTGCCTCAAATCTACCCTGGGAGCTGGACCATGCAATGCTGAGAAGACTGGAGAAGAGGATACTCGTGGGTCTGCCTTGTGGTCTAGCCAGAAAGGCAATGATCAATCACTGGCTTCCTCCAATCAGCAATACAGGAGGGGTGGAGCTTCGAACTGAGCTAGACTATGATGTGCTTGCAGAGGAAACAGACGGTTACTCCGGCTCAGATATCAGGCTGGTCTGTAAGGAAGCGGCGATGAGGCCTGTCAGGAAGATTTTCGACACCCTGGAAAATCACAGTGAGGGTCACAGCCATATGCCGCTTGTTAAACTAGAAACTGTGACCACAGCAGATTTCCTGCAGGTCATCGCTCACACCAAACCATCAGCCAGGAACCTGACAGACAAATTCTCTGCCTGGGAGAGAGAGTACGAGTCTGTCTGAGCTTACACTCTGGACTGTGTAGTTTAATATGCTCGTGTACATACTGCACCCAAATCACATCTTCTCAAACTGAACACAGGTTGCATACCATAAAGCAGGACAACAACGTAATATAATACAGAGCCACATTACGTTCTGATAAATGTACAGAAATTggaaataaaaactttaatgttttgta

Function

symbol description
katnal2 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be located in cytoplasm and microtubule. Predicted to be active in nucleus. Orthologous to human KATNAL2 (katanin catalytic subunit A1 like 2).

NR:

description
LOW QUALITY PROTEIN: katanin p60 ATPase-containing subunit A-like 2

GO: NA

KEGG:

id description
K07767 KATNA1; katanin p60 ATPase-containing subunit A1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942756.2 True 1871 mRNA 0.47 16 18220768 18231104
XM_026942757.2 False 1868 mRNA 0.47 16 18220768 18231104

Neighbor

gene id symbol gene type direction distance location
sigmar1 sigmar1,LOC107573076,LOC107653128 coding upstream 1854 18215583 ~ 18218914 (+)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107554852 coding upstream 462545 17751578 ~ 17758223 (+)
rassf6 rassf6 coding upstream 477172 17728618 ~ 17743596 (+)
lpar1 lpar1,LOC107554848,LOC107723319 coding upstream 531772 17665665 ~ 17688996 (+)
LOC113544058 epha5,LOC108428864,LOC107702602 coding upstream 611183 17552931 ~ 17609585 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding downstream 4265 18235369 ~ 18240105 (+)
LOC113543970 LOC108276577,LOC108262336 coding downstream 134966 18366070 ~ 18372136 (+)
si:dkey-88l16.3 LOC108277154 coding downstream 141608 18372712 ~ 18398037 (+)
parm1 NA coding downstream 183483 18414587 ~ 18420080 (+)
trnam-cau_43 NA coding downstream 227981 18459085 ~ 18459156 (+)
G271235 NA non-coding upstream 94976 18124822 ~ 18125792 (+)
G271104 NA non-coding upstream 447388 17769769 ~ 17773380 (+)
G271102 NA non-coding upstream 456239 17759550 ~ 17764529 (+)
G271076 NA non-coding upstream 529907 17689656 ~ 17690861 (+)
G270913 NA non-coding upstream 831789 17361945 ~ 17388979 (+)
G271340 NA non-coding downstream 67018 18298122 ~ 18348384 (+)
LOC117599343 NA non-coding downstream 194968 18426072 ~ 18427190 (+)
G271542 NA non-coding downstream 682153 18913257 ~ 18913627 (+)
G271544 NA non-coding downstream 686905 18918009 ~ 18918576 (+)
G271545 NA non-coding downstream 687490 18918594 ~ 18919467 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 1119699 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 1131390 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 1131469 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 1132168 17088529 ~ 17088600 (+)
trnar-ccu_12 NA other upstream 1132247 17088449 ~ 17088521 (+)
G271406 NA other downstream 173165 18404269 ~ 18407498 (+)
G271863 NA other downstream 1010605 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 1144988 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 1258102 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 1551323 19782427 ~ 19786831 (+)

Expression


Co-expression Network