rab36 (rab36,LOC108427235,LOC107555516,LOC103042607)


Basic Information

Item Value
gene id rab36
gene name rab36,LOC108427235,LOC107555516,LOC103042607
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 21062685 ~ 21074114 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942768.2
AAGTGCTCTATAGGTATCGCGGGAGTTCTCGTTCAATCACGTGACTTCTCACACAGCTCGGTTATCAGGGAAGATGAGTCACGTGATTTCTGAGGCGGAGTTGTTGCCATGGAGATTTGGGTTGACTGATGCACAGAGCGGATCAGCGAGAGGACGCGTGTGGACTCAGATTGCGTTTTTGATTGAAAATTAACCAAATCAAAACAGTAATTTACACAACAAACGTCAGGATTGGTGAGAGTTTAGTCGCTCTGGCTGCTGAGAGACGCCAGAATGCAGTTCGCTCCTCCTGTCAGCAAGAACAGGATCATATCCACATTTCCCAAGtgttatAATCCACAAGCATGTCTGCAGATGAAGGAAGACTGGAGTGCTAAAGCTAAGCTGGTTTTTAAAGACCGAGCCACCAGGCAGCAGGGTCTGGACAGATTGAAGATGTCGAAAGCCGTCGTGGTTGGAGACCTGAACGTAGGGAAGACCTGCTTAATTAACAGGTTCTGTAAAGATGCCTTTGATCGTGACTACAAGGCCACCATCGGGGTCGACTTTGAAATCGAGAGGTTTGAGCTCTCTGGGCTTCCGTTCTCCCTTCAGATCTGGGACACTGCAGGCCAGGAGAAGTTTAAATGCATTGCTGCAGCGTATTACCGAGGAGCTCAGGtgaTCGTCACGGTATTCGACATGACAGACattaaaacactggaaaacacaaaGCAGTGGCTGATGGAGGCTCTGAACGAAAACGAACCAAACTCCTGCTTTATTTTCTTGGTTGGAACCAAAAGAGATCTGCTGTCTCCAGAGGAATGccagaggacagagagagacgcagTAAAGATGGCGGCGGAGATGAACGCAGAGTTCTGGTCTGTCTCGTCCAAAACAGgagaAAACGTGCAGCAGTTCTTCTTCCGTGTGGCTGCTCTGGCTTTCGAAGACTCCGTCCTGAAGGACATGGAGCTCGGCTACAGCACGGCGCAGATCGGAGACGGAGACGTTCTCAaaGTGGATAAAACTCAAGCGGCTGCAGAGGTGAAGGCAGTGAGGAAGAGCTGCTGCTGATCTGGTGGAGATGTTCTGCACTAAATCACGCTGAAGACCTCCAAAGGAGCAGCTTGAGAatttaaaaaggaagaaacagaaacactgaGCAGTCGAGTGTTTGATCACACAGCACCTGCTCTGAGTAAAAGGAAGTAAAACCCGGGACTTTTACTGCTCGAGCTTCATCATGGTGTTTATACTCTCAGTATTGTGCTACTTTAATCACTGccattatagaaataaaatgaaaataaaatatacagttttgGAGCAGAGGAGTGTAAACCTGACTGCCTCTTTAACAGAACAGAAATTTAATTCAGTATTTAATTGTGATCGATCGCTGGAACTGAGCAGCTGTTTGAAAACCTGCATCTTAAAATCACAGTTATTGACATGAatttggattattttattattttaccaatacttttttttttacaacattaaatgactt

Function

symbol description
rab36 Predicted to enable GTP binding activity and GTPase activity. Orthologous to human RAB36 (RAB36, member RAS oncogene family).

NR:

description
ras-related protein Rab-36-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07922 RAB36; Ras-related protein Rab-36

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942768.2 True 1501 mRNA 0.45 11 21062685 21074114

Neighbor

gene id symbol gene type direction distance location
gnaz gnaz,LOC107555529 coding upstream 12713 20960062 ~ 21049972 (+)
nt5c2l1 nt5dc4,LOC108435390 coding upstream 161418 20884027 ~ 20901267 (+)
slc2a11l LOC108277148 coding upstream 182516 20871377 ~ 20880169 (+)
ska1 ska1 coding upstream 192142 20864565 ~ 20870543 (+)
smarcad1b LOC108277297 coding upstream 198435 20844325 ~ 20864250 (+)
depdc5 depdc5,LOC107686465,LOC107713378 coding downstream 539 21074653 ~ 21106826 (+)
ywhah ywhah,LOC107562560,LOC107713377,LOC107555530,LOC107688000 coding downstream 34544 21108658 ~ 21115104 (+)
slc5a1 slc5a1,LOC107713298,LOC107744177,LOC107688629 coding downstream 55172 21129286 ~ 21147233 (+)
rnf208 rnf208,si:dkey-106l3.6,LOC107688056,LOC107744121,LOC107713373,LOC107686464 coding downstream 77255 21151369 ~ 21167542 (+)
fam166b fam166b coding downstream 113985 21188099 ~ 21195036 (+)
G272803 NA non-coding upstream 72134 20990343 ~ 20990551 (+)
G272770 NA non-coding upstream 131102 20927622 ~ 20931583 (+)
G272470 NA non-coding upstream 313038 20749361 ~ 20749647 (+)
G272450 NA non-coding upstream 325185 20716511 ~ 20737500 (+)
G272448 NA non-coding upstream 337491 20659603 ~ 20725194 (+)
G272940 NA non-coding downstream 405786 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 413998 21488112 ~ 21492076 (+)
G273248 NA non-coding downstream 888550 21962664 ~ 21962867 (+)
G273258 NA non-coding downstream 907865 21981979 ~ 21982191 (+)
G273226 NA non-coding downstream 963725 22037839 ~ 22038149 (+)
G272408 NA other upstream 519731 20540325 ~ 20542954 (+)
G272374 NA other upstream 633542 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 663738 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 1119180 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 1213859 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 285405 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 401973 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 848437 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1295142 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1548314 22622428 ~ 22665570 (+)

Expression


Co-expression Network