fstb (LOC108276855,LOC108433530)


Basic Information

Item Value
gene id fstb
gene name LOC108276855,LOC108433530
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 22852481 ~ 22863830 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942775.2
CTGGGATCAGTGTGAGGAAGAGCACACCGGGATtatcaggatcaggatcaggatcaggatcaggattAGTTTGGGGATCAGGATGCTCCGCGTTCCGTCGCTGCTTCTCCTCTGGCTCGCGCACTTCATTGACGAGCAGCGAGTTTACGCTGGGAACTGCTGGTATGAGCAGGGGAAGAACGGCCGCTGTCAGATGCTCTACCTGTCTGAAATGAGCCGGGAGGACTGCTGCAGGAGCGAGAGGCCCGGCATGGCGTGGACCGAGGAGGACGTTCCCAGCAACACGTTGTTCCGGTGGCTGCTCATGCACGGAGGCGCACCAAACTGCATACCGTGTAAAGAGACGTGTGATAACGTGGACTGTGGTCCTGGGAAGAAATGCAAGTTGAACCGGAGAAACAAACcgcgctgtgtgtgtgctccagACTGCACCAATAACACCTTCAAGGGCCCGGTGTGCGGCTCGGACGGTACCACGTACCGCAACGAGTGCGCGCTCCGCAGAACCAAGTGCAGGAGATACCCCAACCTGGTGGCCCAGTACCAGGGGAAGTGCAAGAAGACGTGTAACGACGTGCACTGCCCGGGAAGCTCGTCTTGCGTGGTGGACCAGAACAACAACGCCTACTGTGTGACCTGTGAGCGCGTGTGTCCTGAAGTGACCTCGCCTGAGCAGTACCTGTGTGGGAACGACGGCATCATTTACGCCAGCGCCTGCCATCTCCGACGAGCCACGTGCATTCTGGGAAGGTCCATCGGGGTCGCCTATGAGGGCAAGTGTATAGATGCCCAGTCGTGCGATGACATCCGCTGTCCGAGCGGAAAGAAGTGTCTGTGGGATATGAGGACGGGCCGAGGACGATGCTCCGTGTGCGAGAGCGAATGTCCCGAGAGTCATCCCGGAGACAGCGTGTGCGCCAGCGACAACACCACGTACCGCAGTGAGTGTGAGATGCATCGGGTCGCCTGCTCGCGAGGCCTCGTCCTCGAGGTCAAACACTCCGGATCCTGTAACTGCGTCGACCACTGACTCGTTCGTCCCGTCGTACGTGGATCCTGGCCTGCTTCGTCACGTGAATCAGACAAAGCATCAACGTTTCAGATGCATTATTATGGGAAGGAAtaaaattgatcattttcaaAAAAGAGACTTATTTTCTTCCCTTCTAAAGCCATGAGCTCCTGCGCTGCTGTGTTCCTCCGCaagcagagagaggaggatgaggaggaaggggaggaggatgaggaggaaggggaggaggatgaggaggaaggtCTGGACAGACAGATTAACGTGACTGTAGAGTGTGAAGCAGTGCGACTCGGCTCCAGTGCAGAGTCAGTATTCAGACTGTATATAGACATACACGCTAATTTATTttccagaatttaaaaaaaaaa

Function

NR:

description
PREDICTED: follistatin-A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942775.2 True 1401 mRNA 0.56 6 22852481 22863830

Neighbor

gene id symbol gene type direction distance location
itga2.2 itga2 coding upstream 14863 22792578 ~ 22837618 (+)
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding upstream 72194 22767226 ~ 22780287 (+)
vsig8a LOC108277295 coding upstream 86206 22706961 ~ 22766275 (+)
igsf9a LOC108277156 coding upstream 425660 22379920 ~ 22426821 (+)
dpysl2b dpysl2b,dpysl2,LOC108277094,LOC108427246,LOC107687778,LOC107678023,LOC107560521 coding upstream 500765 22315294 ~ 22351716 (+)
snx18b LOC108276851 coding downstream 85063 22948893 ~ 22957601 (+)
rasgef1bb LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538 coding downstream 141174 23005004 ~ 23016226 (+)
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding downstream 156098 23019928 ~ 23039549 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding downstream 176636 23040466 ~ 23045078 (+)
rbm18 rbm18,LOC107686423 coding downstream 240847 23104677 ~ 23121707 (+)
G273600 NA non-coding upstream 12361 22801081 ~ 22840120 (+)
G273473 NA non-coding upstream 290156 22562104 ~ 22562325 (+)
G273226 NA non-coding upstream 814332 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 870290 21981979 ~ 21982191 (+)
G273248 NA non-coding upstream 889614 21962664 ~ 21962867 (+)
LOC117599377 NA non-coding downstream 128712 22992542 ~ 22994797 (+)
G273683 NA non-coding downstream 173579 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 184091 23047921 ~ 23062345 (+)
LOC117599346 NA non-coding downstream 205107 23068937 ~ 23073938 (+)
G273719 NA non-coding downstream 271749 23135579 ~ 23135832 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 186911 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 477606 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 818484 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1373601 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 1490737 21359519 ~ 21361744 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 185982 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 380730 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 417731 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 1074148 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 1239243 24103073 ~ 24112853 (+)

Expression


Co-expression Network