swi5 (swi5)


Basic Information

Item Value
gene id swi5
gene name swi5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23781356 ~ 23786783 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942790.2
GTTCGATTTCAAAGCAAGGCGGGATCCAGTAAACAGCAGAATGGCGCACTGAGCTAATCTCATAAAGCTAGCTATCTGACTAGCTGTGTTAGTGACTTCTTTTTACTCGTTATTTATGAGTGCTCATATTAATAAACTGTCTTAAATTAAGTGCAGAATGGATTCTGAATCCggacaaaatataaaatcagaTCATGATGGCGCTGAAACTTTAAAATTTACACCACAAAGAGGCGGAACTTTGCTAGCATCaagaaaaagGACGCTCCACTCAGGATGGAAGAAAGTCAACTCCAGTTTTAAATCTCCAgTTCAGGTTTCCAGCACGCTGAATAACGGGGTGTGTGTCGAGGAGGAGATCAGAGAACTACAGaacacactgctgcagctggAGTCTGACATCACGCTGTTAGAAAgcgaAGGCGTCTGTGTGCACGAGCTCGATCTCCACATTAACCTGCTACACGAATATAACGACATCAAGGACATCGCACAGACTCTTCTAGGCAGGCTGGCCGGCCTGCGCAGCGTCACCACACGCGACTTGTACGCTCAGTTCGGCATGGAGCTGGACGACTGATTGGCTGAGCTGCGCTGTGGGAGGACCGAACACGGTGCTAACGCTGGCGGACGATTCTGGAGCAGAAAACATTTCATCATCCTCACGAACgcggtggtgtgatgaagcggagtcactaaCACACCCCGAAGTTCATCGTTTCATActacagcacgtccccaagtgttttattcctcttataccacagcaaattgctaATGATTACGATCTTTTAGTTATTAAAcaacagtccttccctcaccagcctctctttttttctctttcctgtcatgttactgagaaacagcaaaaaaaaa

Function

symbol description
swi5 Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA repair. Predicted to be part of Swi5-Sfr1 complex and Swi5-Swi2 complex. Orthologous to human SWI5 (SWI5 homologous recombination repair protein).

NR:

description
DNA repair protein SWI5 homolog isoform X1

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0032798 Swi5-Sfr1 complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942790.2 True 876 mRNA 0.46 5 23781356 23786783

Neighbor

gene id symbol gene type direction distance location
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding upstream 4323 23755117 ~ 23777033 (+)
sardh sardh coding upstream 59838 23683550 ~ 23721518 (+)
cercam cercam,LOC107744239,LOC107597609,LOC107685123 coding upstream 104726 23662619 ~ 23676630 (+)
urm1 urm1 coding upstream 141009 23624137 ~ 23640347 (+)
sh2d3ca sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235 coding upstream 162835 23566714 ~ 23618521 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding downstream 2649 23789432 ~ 23809829 (+)
ptgdsa lcn2 coding downstream 28893 23815676 ~ 23831525 (+)
ambp ambp coding downstream 48384 23835167 ~ 23845395 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding downstream 184655 23971438 ~ 24011050 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 446977 24233760 ~ 24252068 (+)
G274161 NA non-coding upstream 104129 23675643 ~ 23677227 (+)
G273900 NA non-coding upstream 382825 23396808 ~ 23398531 (+)
G273880 NA non-coding upstream 447807 23286000 ~ 23333549 (+)
G273865 NA non-coding upstream 501567 23261046 ~ 23279789 (+)
G273719 NA non-coding upstream 645524 23135579 ~ 23135832 (+)
G274186 NA non-coding downstream 65214 23851997 ~ 23852218 (+)
G274192 NA non-coding downstream 73041 23859824 ~ 23860703 (+)
G274193 NA non-coding downstream 82071 23868854 ~ 23869197 (+)
G274239 NA non-coding downstream 158833 23945616 ~ 23946507 (+)
G274289 NA non-coding downstream 320865 24107648 ~ 24110738 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 395249 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 506703 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 635789 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 1115786 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 1406481 22369256 ~ 22374875 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 151195 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 316290 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 439371 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 693816 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 743195 24529978 ~ 24639642 (+)

Expression


Co-expression Network