ptgdsa (lcn2)


Basic Information

Item Value
gene id ptgdsa
gene name lcn2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23815676 ~ 23831525 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942804.2
gcTCCATGATGAAGATCACGCTGGTGAGCATCACCGTGACCATCGCGCTCCTGATGGAGGTCCACGCTGACGTCCAGCCGCAGAAGAACTTTGACCTGAAGAGGTTCGCAGGTCGGTGGTACCGCGTCGGTCTGGCGTACAACTCGCCCAGCTTTGCTCGGCACAGGAACAAGCTGACGATCTGTATGGGCGTGGTGGAACCGAAGGAGAACGGCGGCGTCATGATGACGGTGTGGAAAACGAAGTCCTCCGTCTGCCAGAAAGAAGTCTACAAATATGAGAAGACGTCCGTACCTGGCGTGTTCACGTACTTCAGCACACGACACAGCCGGGTGAAGGACATCACTGTGGTGGAGACAAACTACAGCGAGTTTGCTGTGATTTATAAACACAAGAAGTTCAACAGGGAATTCTCTCAGGTGTCTCTGtacaGTCGTAGTCAGAAGTTGAGATCAGAAGTGATtgagaagtttaaaaaatacgCCATGCAGCACGGCTTCCCTGAAGAGTCCATTACAATTCCACCACCagcagATAACTGTCCTCCCACACGCCACTGATGTCGTGTTGTGGGAGTGTGATGAGCCTCAGACGGGACGTTCTCTACAGAGCACAGACCCCGAACCGGATCTCCAGGCTCGATCAGGAGAACCGATTTCTGTACCTTAACCagctgttcatgttcatgttcatgttcatgttaatcCCATATAAAGTCGATATATTCGTGCTGGTGTGAAATCCGAGTCTCTGTAATGCGAGACACTACaggtactttttttaaaatattggtatgtatttaaaaataaatgtacatttatttatgcaaatgaggcttcatttcatttaatacacacaaatTTGCGTCCTGAATACAACTTACAAAATCTAGTCTTTAGATGTTAGAGTTGACATTTGGATGAGATTTATTCCTACAGTTGAAGAGAAGctattttatagatttatagattatcagaaaaaaaacaaactgaaaaactaTTTACCTGAACTGTCATTTTGACCTGTAGTGTGat

Function

symbol description
lcn2 Enables enterobactin binding activity; identical protein binding activity; and iron ion binding activity. Involved in defense response to bacterium and sequestering of iron ion. Located in extracellular space. Implicated in urinary tract infection. Biomarker of several diseases, including COVID-19; congenital diaphragmatic hernia; hidradenitis suppurativa; hypertension (multiple); and kidney disease (multiple).

NR:

description
neutrophil gelatinase-associated lipocalin isoform X2

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006810 transport biological_process
GO:0005576 extracellular region cellular_component
GO:0036094 small molecule binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K01830 PTGDS; prostaglandin-H2 D-isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942804.2 True 1034 mRNA 0.45 7 23815676 23831525

Neighbor

gene id symbol gene type direction distance location
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 5847 23789432 ~ 23809829 (+)
swi5 swi5 coding upstream 28893 23781356 ~ 23786783 (+)
fam163ba fam163b,LOC107595554,LOC107713289,LOC107685121,LOC107597608 coding upstream 38643 23755117 ~ 23777033 (+)
sardh sardh coding upstream 94158 23683550 ~ 23721518 (+)
cercam cercam,LOC107744239,LOC107597609,LOC107685123 coding upstream 139046 23662619 ~ 23676630 (+)
ambp ambp coding downstream 3642 23835167 ~ 23845395 (+)
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding downstream 139913 23971438 ~ 24011050 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 402235 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 444557 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 478506 24310031 ~ 24359123 (+)
G274161 NA non-coding upstream 138449 23675643 ~ 23677227 (+)
G273900 NA non-coding upstream 417145 23396808 ~ 23398531 (+)
G273880 NA non-coding upstream 482127 23286000 ~ 23333549 (+)
G273865 NA non-coding upstream 535887 23261046 ~ 23279789 (+)
G273719 NA non-coding upstream 679844 23135579 ~ 23135832 (+)
G274186 NA non-coding downstream 20472 23851997 ~ 23852218 (+)
G274192 NA non-coding downstream 28299 23859824 ~ 23860703 (+)
G274193 NA non-coding downstream 37329 23868854 ~ 23869197 (+)
G274239 NA non-coding downstream 114091 23945616 ~ 23946507 (+)
G274289 NA non-coding downstream 276123 24107648 ~ 24110738 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 429569 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 541023 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 670109 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 1150106 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 1440801 22369256 ~ 22374875 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 106453 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 271548 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 394629 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 649074 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 698453 24529978 ~ 24639642 (+)

Expression


Co-expression Network