loxa (lox,LOC108277371,LOC107562574)


Basic Information

Item Value
gene id loxa
gene name lox,LOC108277371,LOC107562574
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20647807 ~ 20661095 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942813.2
ccgagatcttttttttttttttttttcatcatgcacattgcttttattattttttttcactgagtAGGCTGTAAGAAATATAGTTTAGGCTTTTACTGCTcagttaattaaagaaaaaaaaaaagagcagcaggCCTAattatattagattttttaatataagaGAGTAATTGGCATTGTGTAGCAGGGACGTCGGGGATCTCACGGACACAATGCGCGCACGACAACTCGACACGGTATTTTACGCGTGCGCGCGCCTGTATTTATTAAGCTGCGTGCTCCAGTGCGCACGGTGTCAGCGGGACTCGGCGCCTCTCAGGCGGACCATCCAGTGGCAGCATGACGGCAGACTCTTCAGCATCCTGAGTCAGGGCGCGCAGTACGTGCCTCCGTTAAGGAGAAACGGAAACGGAGatggagagcagcagcagcaggagcagcggCGGCAGCAGCCTCCAGTCAGACCCCTAACCGTGATCAGCAGCGGCCATGTGAGACACAACGAGCCGTCTGGTGCTTCCGCGCCGTCGCACTCACACGGATCGCGCTGGTTGCCCCTCAGGCGCGCCGGTGCGCCTCGCGGCCGCGTAAACGACACCGCGCGCACGGCTCCGGGGCCGGTTCCGTCTCCACCTCCGTCTCCACCGCCTCCGAGGGCGCGAGACGATGCCATGGTCGGAGACGATCCTTACAATCCGTACAAGTACAGCGAGCAGGACAACCCGTACTACAACTACTATGACGCGTACGAACGACCGAGACCGAGACAGAGACCCGGATATGGAACAAGTTACTTTCAGTACGGTTTGCCTGACCTCGTGCCAGATCCGTACTACATTCAGGCCTCCACCTATGTGCAAAGGGTGCCAATGTACAACCTCCGATGTGCTGCAGAGGAAAACTGCCTTGCCAGctCGGCGTATAGGTCAAGTGTGAGAGATTATGATACTCGGATGCTGCTGCGCTTCCCACAGCGTGTCAAGAACCAGGGCACGTCCGACTTCCTGCCTAGCCGGCCACGCTACTCTTGGGAGTGGCACAGCTGCCATCAGCACTTCCACAGCATGGATGAATTCAGCCATTACGATCTGCTGGACGCCAGCACTCACTCCCGTGTGGCTGAGGGACACAAGGCCAGCTTCTGCCTGGAGGACACGTCCTGCGACTACGGCTACTACAGACGCTTTGCTTGTACCGCTCACACACAGGGTCTGAGTCCGGGATGTTACGACACTTACAATGCCGACATCGACTGTCAGTGGATCGACATTACAGACGTGAAACCTGGGAATTACATCCTGAAGatcaGTGTTAACCCCAATTATCAGGTTCAAGAGTCTGACTACAGCAACAACATTGTGCGCTGTGACCTTCGCTACACCGGCAACTACGTCTACGCTTCAGGATGTCAGTTGTCACCGTATTAAAACATGTTCAGGTCGACTTCAACACGTTAACGCCGACTGAGGAGACGTTAACTTTAGTCATCATGAAGAAAAGCAGTGGACTTCCAGACTAAGACTGAATACGATATTCGATAGAATCATTTTGAAACTTAGCGCATATTCCAAGATGATGCTTAgacacatttctgtcttttatgtttgtttttttttcttttggttcattttgtTGAATGAATTGATATTTCATGTAAGATGATAGACATATTTTCAATAaagattataaaatgtttacaaaaaaaaagtatgttccAGCTGAAGATAAAATGGTCATTCTGGTAGAGAGTGCAGTTTATTCACCTATAGGGCCATGTTTAACTCAGCTTTACAGAGAGGTAGATTAAACGGTCTGTCTGATCCACGCCGGACAACAATCAGCTCTTTGAGGATGTCCGTGACACTATATTCGTTTATTCTGAGAAGATATTTAACAAAAGCTCATATTACTGCAAGACATGTATTACATGAAAATGACTTGAATAAATCAATTTTCATTCTCTGA
>XM_026942814.2
CAccgagatcttttttttttttttttttcatcatgcacattgcttttattattttttttcactgagtAGGCTGTAAGAAATATAGTTTAGGCTTTTACTGCTcagttaattaaagaaaaaaaaaaagagcagcaggCCTAattatattagattttttaatataagaGAGTAATTGGCATTGTGTAGCAGGGACGTCGGGGATCTCACGGACACAATGCGCGCACGACAACTCGACACGGTATTTTACGCGTGCGCGCGCCTGTATTTATTAAGCTGCGTGCTCCAGTGCGCACGGTGTCAGCGGGACTCGGCGCCTCTCAGGCGGACCATCCAGTGGCAGCATGACGGCAGACTCTTCAGCATCCTGAGTCAGGGCGCGCAGTACGTGCCTCCGTTAAGGAGAAACGGAAACGGAGatggagagcagcagcagcaggagcagcggCGGCAGCAGCCTCCAGTCAGACCCCTAACCGTGATCAGCAGCGGCCATGTGAGACACAACGAGCCGTCTGGTGCTTCCGCGCCGTCGCACTCACACGGATCGCGCTGGTTGCCCCTCAGGCGCGCCGGTGCGCCTCGCGGCCGCGTAAACGACACCGCGCGCACGGCTCCGGGGCCGGTTCCGTCTCCACCTCCGTCTCCACCGCCTCCGAGGGCGCGAGACGATGCCATGGTCGGAGACGATCCTTACAATCCGTACAAGTACAGCGAGCAGGACAACCCGTACTACAACTACTATGACGCGTACGAACGACCGAGACCGAGACAGAGACCCGGATATGGAACAAGTTACTTTCAGTACGGTTTGCCTGACCTCGTGCCAGATCCGTACTACATTCAGGCCTCCACCTATGTGCAAAGGGTGCCAATGTACAACCTCCGATGTGCTGCAGAGGAAAACTGCCTTGCCAGctCGGCGTATAGGTCAAGTGTGAGAGATTATGATACTCGGATGCTGCTGCGCTTCCCACAGCGTGTCAAGAACCAGGGCACGTCCGACTTCCTGCCTAGCCGGCCACGCTACTCTTGGGAGTGGCACAGCTGCCATCAGCACTTCCACAGCATGGATGAATTCAGCCATTACGATCTGCTGGACGCCAGCACTCACTCCCGTGTGGCTGAGGGACACAAGGCCAGCTTCTGCCTGGAGGACACGTCCTGCGACTACGGCTACTACAGACGCTTTGCTTGTACCGCTCACACACAGGGTCTGAGTCCGGGATGTTACGACACTTACAATGCCGACATCGACTGTCAGTGGATCGACATTACAGACGTGAAACCTGGGAATTACATCCTGAAGatcaGTGTTAACCCCAATTATCAGGTTCAAGAGTCTGACTACAGCAACAACATTGTGCGCTGTGACCTTCGCTACACCGGCAACTACGTCTACGCTTCAGGATGTCAGTTGTCACCGTGA

Function

symbol description
lox Enables collagen binding activity and protein-lysine 6-oxidase activity. Involved in peptidyl-lysine oxidation. Located in extracellular space. Implicated in Ehlers-Danlos syndrome; Menkes disease; hypertension; and thoracic aortic aneurysm.

NR:

description
protein-lysine 6-oxidase-like

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0051216 cartilage development biological_process
GO:0022008 neurogenesis biological_process

KEGG:

id description
K00277 LOX; protein-lysine 6-oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942813.2 True 1965 mRNA 0.49 7 20647809 20661095
XM_026942814.2 False 1426 mRNA 0.54 6 20647807 20658625

Neighbor

gene id symbol gene type direction distance location
mpx LOC100335032 coding upstream 23866 20608815 ~ 20623941 (+)
sftpba LOC108276523 coding upstream 305424 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 334550 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 433053 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 493004 20125535 ~ 20154803 (+)
snx24 snx24 coding downstream 2008 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 23877 20684972 ~ 20697663 (+)
pcyox1 pcyox1 coding downstream 41420 20702515 ~ 20711026 (+)
stard7 stard7,LOC107713384,LOC107687872 coding downstream 89078 20750173 ~ 20761668 (+)
smarcad1b LOC108277297 coding downstream 183230 20844325 ~ 20864250 (+)
G272426 NA non-coding upstream 83743 20562176 ~ 20564064 (+)
G272361 NA non-coding upstream 182761 20409723 ~ 20465046 (+)
G272360 NA non-coding upstream 200129 20442699 ~ 20447678 (+)
G272347 NA non-coding upstream 337931 20309591 ~ 20309876 (+)
G272305 NA non-coding upstream 407461 20239894 ~ 20240346 (+)
G272450 NA non-coding downstream 55416 20716511 ~ 20737500 (+)
G272470 NA non-coding downstream 88266 20749361 ~ 20749647 (+)
G272770 NA non-coding downstream 266527 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 329248 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 818805 21479900 ~ 21492672 (+)
G272408 NA other upstream 104853 20540325 ~ 20542954 (+)
G272374 NA other upstream 218664 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 248860 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 704302 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 798981 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 698424 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 814992 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1261456 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1708161 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1961333 22622428 ~ 22665570 (+)

Expression


Co-expression Network