rasgef1bb (LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538)


Basic Information

Item Value
gene id rasgef1bb
gene name LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23005004 ~ 23016226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942840.2
CCCGCAGTTGCTCTGCTGGACTGAAACTGGATATTTATCCTGCGAGGGTGAGACAATGGAAGTTGGAAAAACACCGATTTTAAGTTTATAAACTCAGAATCAACTCGGGATTTGATTTGTTTCAAGTGGGAGATTGAAAACAGAGCAAAGATTTGCGAGTTTTAACCGGAGCTGCGTTTAATTTTTGTCGGTTTCGGGTTACTTACAGTCAAGGATTTTTCagtgctttgctttttttgaaGTTTCTAGGACTCCAGGATGCCCCAGACGACGCCGTTCGCAGCCAAGTTTCCTCAGAATCCGTATGGAGGAGGTCATACTCGCTACAAACCTGTGGAGGAGAGCTACAGCGGGCTGAGATATCACGACAACAGCCTCGTATCCGGATCACTCGAGGCTCTCATACAGCACCTCGTCCCCACTGTGGACTACTCACCTGACAGGTCGTACATCTTCACCTTCCTGCTGAGCTCGCGTCTCTTCCTGCATCCGTTTGAGCTCATGTCCAGAGTGTGTTACTTGTGTGTGGAGCACCACCGAGTCGGAGACCCTCAGATTGATAAGAAGCGAATCCGTGACATCGCGCCGAAGATCGTGCAGCTTCTCACCGAGTGGACGGAGACGTTTCCGTACGACTTCCGGGACGAGCGCATGATGCGCAGCCTGAAGGAGATGACGCACCGGCTGGCTTTCGGGGATGAGTTGTCTCGGAGAGCGATGCAGCGTCTGATCCAGCGACTTCTGCGCAAACTCACCATCCTGGGACAGTACGAGGAGTCTCTGGTGACGTCCAGCACGGCGGTCGCGGCGTCAGCGTCGGCGTCGGCGTCAGCGGCGTCGGCGGGGGAGAAACCGGCTGCTCTGAAGGCGAAGCAGCACGTGCGCAGGGAGGAGTGTATTCTGAACGTGTGTGACGACCCGTTCATCCTCGCTCAGCAGCTCACACACATCGAGATGGAGAGACTCAGTTACATCGGCCCTGAGGAGTTCGTCCAGGCGTTTGTTCAGAAAAGACCTGCTGATAATCATAAgagttTTTTCAGCAAGAGGAGAGTCAGTAATCTGGAAGCCTACGTCGAGTGGTTTAATCGGCTCAGTTACCTGGTGGCCACAGAAATCTGCTTGcCAGTGAAGAAGAAGCACAGAGCTCGAGTGTTGGAGTTTTTCATCGACGTGGCTCGGGAATGCTTCAACATCGGCAACTTTAACTCCTTAATGGCTATAATCACTGGGATGAACATGAGTCCCGTGTCCAGGCTGAAGAAAACCTGGGGCAAAGTCAACACGGACAAGTTCGAGATCCTGGAGCATCAAATGGATCCGTCCAATAACTTCTACAGCTACCGTACTGCACTGCGAGGAGCCACTCAGAGATCAGCTACGGCTCACACCACCAGAGAAAAGatCGTTATTCCTTTCTTCAGCTTGTTCATTAAGGACATCTACTTCCTTAACGAGGGCTGCACCAGTCGCCTGCCCAATggacacatcaactttgagAAATTTTGGGAGCTGGCCAAGCAAGTGAGTGAGTTTCTGGCGTGGAGGCAGGTGATCTGTCCgtttgagagagacagaaaaactcTGCAGTACCTCATCAGCGTGTCCGTCTTCACAGACGATGAGCTGCAGTTGGCCTCTTACGAGAGTGAAGGACCAGAAAACAACCTGGAGAGAGATACACGCCGCTCCCTCAGATCGTCTCTCAGCAGGATGTAGATGCCGATTTTTGGGAGCACTGGGAGAGTCGGTCctgactgaaatgaaatgaagtgaaaCACTGCACAAAGAGTTTTTGTTAGTATGAAAAattttcatataatatttttcCCTATATTGAATAATGAGACTGGATTCTCATCACAGCATCATCTCCATATTAGAGAAACATAAATATTCATCTCATCTCATGTACCTCATGTAAAGCAGTTGGTGTAAGCTTAGTGAAGTGTTAGAAGCGCTATAATCTGGATGAATGAAGAGCCCGTCGCTGGCTGACCTCTTCTGTTACACCGTGTaagctgtaaaatatatttctatgtttgtgtgtatgatttatatgtcatttaaatgtttttgtatggaTTTGCTGGCCTTGTGTATATAATCTGAACATTGCCTTATAAAGAAACTCTAAACATA
>XM_026942841.2
TCCCGCAGTTGCTCTGCTGGACTGAAACTGGATATTTATCCTGCGAGGGTGAGACAATGGAAGTTGGAAAAACACCGATTTTAAGTTTATAAACTCAGAATCAACTCGGGATTTGATTTGTTTCAAGTGGGAGATTGAAAACAGAGCAAAGATTTGCGAGTTTTAACCGGAGCTGCGTTTAATTTTTGTCGGTTTCGGGTTACTTACAGTCAAGGATTTTTCagtgctttgctttttttgaaGTTTCTAGGACTCCAGGATGCCCCAGACGACGCCGTTCGCAGCCAAGTTTCCTCAGAATCCGTATGGAGGAGGTCATACTCGCTACAAACCTGTGGAGGAGAGCTACAGCGGGCTGAGATATCACGACAACAGCCTCGTATCCGGATCACTCGAGGCTCTCATACAGCACCTCGTCCCCACTGTGGACTACTCACCTGACAGGTCGTACATCTTCACCTTCCTGCTGAGCTCGCGTCTCTTCCTGCATCCGTTTGAGCTCATGTCCAGAGTGTGTTACTTGTGTGTGGAGCACCACCGAGTCGGAGACCCTCAGATTGATAAGAAGCGAATCCGTGACATCGCGCCGAAGATCGTGCAGCTTCTCACCGAGTGGACGGAGACGTTTCCGTACGACTTCCGGGACGAGCGCATGATGCGCAGCCTGAAGGAGATGACGCACCGGCTGGCTTTCGGGGATGAGTTGTCTCGGAGAGCGATGCAGCGTCTGATCCAGCGACTTCTGCGCAAACTCACCATCCTGGGACAGTACGAGGAGTCTCTGGTGACGTCCAGCACGGCGGTCGCGGCGTCAGCGTCGGCGTCGGCGTCAGCGGCGTCGGCGGGGGAGAAACCGGCTGCTCTGAAGGCGAAGCAGCACGTGCGCAGGGAGGAGTGTATTCTGAACGTGTGTGACGACCCGTTCATCCTCGCTCAGCAGCTCACACACATCGAGATGGAGAGACTCAGTTACATCGGCCCTGAGGAGTTCGTCCAGGCGTTTGTTCAGAAAAGACCTGCTGATAATCATAAgagttTTTTCAGCAAGAGGAGAGTCAGTAATCTGGAAGCCTACGTCGAGTGGTTTAATCGGCTCAGTTACCTGGTGGCCACAGAAATCTGCTTGcCAGTGAAGAAGAAGCACAGAGCTCGAGTGTTGGAGTTTTTCATCGACGTGGCTCGGGAATGCTTCAACATCGGCAACTTTAACTCCTTAATGGCTATAATCACTGGGATGAACATGAGTCCCGTGTCCAGGCTGAAGAAAACCTGGGGCAAAGTCAACACGGACAAGTTCGAGATCCTGGAGCATCAAATGGATCCGTCCAATAACTTCTACAGCTACCGTACTGCACTGCGAGGAGCCACTCAGAGATCAGCTACGGCTCACACCACCAGAGAAAAGatCGTTATTCCTTTCTTCAGCTTGTTCATTAAGGACATCTACTTCCTTAACGAGGGCTGCACCAGTCGCCTGCCCAATggacacatcaactttgagAAATTTTGGGAGCTGGCCAAGCAAGTGAGTGAGTTTCTGGCGTGGAGGCAGGTGATCTGTCCgtttgagagagacagaaaaactcTGCAGTACCTCATCAGCGTGTCCGTCTTCACAGACGATGAGCTGCAGTTGGCCTCTTACGAGAGTGAAGGACCAGAAAACAACCTGGAGAGAGATACACGCCGCTCCCTCAGGTGA

Function

NR:

description
ras-GEF domain-containing family member 1B-B-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942840.2 True 2142 mRNA 0.49 14 23005005 23016226
XM_026942841.2 False 1702 mRNA 0.52 13 23005004 23015228

Neighbor

gene id symbol gene type direction distance location
snx18b LOC108276851 coding upstream 47403 22948893 ~ 22957601 (+)
fstb LOC108276855,LOC108433530 coding upstream 141174 22852481 ~ 22863830 (+)
itga2.2 itga2 coding upstream 167386 22792578 ~ 22837618 (+)
atp6v1b2 atp6v1b2,LOC108277294,LOC103034689,LOC108433525,LOC107687718,LOC107678016 coding upstream 224717 22767226 ~ 22780287 (+)
vsig8a LOC108277295 coding upstream 238729 22706961 ~ 22766275 (+)
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding downstream 3702 23019928 ~ 23039549 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding downstream 24240 23040466 ~ 23045078 (+)
rbm18 rbm18,LOC107686423 coding downstream 88451 23104677 ~ 23121707 (+)
ndufa8 ndufa8,LOC107686420 coding downstream 147483 23163709 ~ 23169517 (+)
si:ch211-243g18.2 LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290 coding downstream 203919 23220145 ~ 23232035 (+)
LOC117599377 NA non-coding upstream 10207 22992542 ~ 22994797 (+)
G273600 NA non-coding upstream 164884 22801081 ~ 22840120 (+)
G273473 NA non-coding upstream 442679 22562104 ~ 22562325 (+)
G273226 NA non-coding upstream 966855 22037839 ~ 22038149 (+)
G273258 NA non-coding upstream 1022813 21981979 ~ 21982191 (+)
G273683 NA non-coding downstream 21183 23037409 ~ 23038616 (+)
G273644 NA non-coding downstream 31695 23047921 ~ 23062345 (+)
LOC117599346 NA non-coding downstream 52711 23068937 ~ 23073938 (+)
G273719 NA non-coding downstream 119353 23135579 ~ 23135832 (+)
G273865 NA non-coding downstream 244820 23261046 ~ 23279789 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 339434 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 630129 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 971007 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1526124 21476087 ~ 21478880 (+)
LOC113544125 LOC100304632 other upstream 1643260 21359519 ~ 21361744 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other downstream 33586 23049812 ~ 23145567 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 228334 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 265335 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 921752 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 1086847 24103073 ~ 24112853 (+)

Expression


Co-expression Network