plppr1 (plppr1,LOC107702599,LOC107653496,LOC107710008,LOC107750956,LOC102776600,LOC106568589)


Basic Information

Item Value
gene id plppr1
gene name plppr1,LOC107702599,LOC107653496,LOC107710008,LOC107750956,LOC102776600,LOC106568589
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 17355099 ~ 17396817 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942846.2
cactctctctctctctctccccttcctcGTGCTCGTGTGTGAATATCAGCTCCTCTAGCGTTCACCACGGCGTCTAATCACCGAGCTCAGCCTCGGAGGCAACACTGTGGCACCCAAACCACCATGGAGTAGTTCTTGATTTTTCTTTGATGGCTTGTGCATCCTGGCTGGAGTGTAAGGAGACAGCAATAGCGCGACCATCATCAACGTGACCGTGTTGAGAAAATGGCCTCGGACAACATGCAGCGTAGTTACTCCATCATACCGTGCTTCATATTTGTGGAGCTGGTCATCATGGCAGGCACGGTGCTGTTGGCCTACTACTTTGAGTGCACCGATATATTCGGCATCCACATCCAGGGCTTCTTCTGCAACGACGCCGAGCTCATGAAGCCCTACCCTGGAGTCGAGGAGAACAGCTTCATTCCTCCGCTCATTCTCTACTGCGTGGTGGCTGCAGTTCCCACCGCCGTCATCTTCATTGGTGAGATCTCCATGTACATGATGAAATCCACAAGAGAGGCTCTCATTGCCCAGGAGAAGATGATTGTTACTGGAGAATGCTGCTACCTGAATCCACTCATTCGTAGGATCATCAGGTTTATCGGTGTGTTTGCGTTTGGCCTGTTTGCGACAGACATCTTTGTGAACGCCGGGCAGGTGGTGACGGGCAGCTTGGCACCGTACTTCCTCACCGTCTGCCAGCCCAATTACACAGGCAACGAGTGCCGCCTTAACCACCAGTTCATCTCCAACGGCAACATCTGCACAGGGAACCGGGCGGTGGTGGAGCGAGCCAGGAGGTCCTTCCCGTCCAAAGACGCCTCGCTCAGCGTCTACTCAGCCGTCTATGTCACTatGTACATCACGAGCACAATCAGGACGAAGAGCAGTCGTCTGGCAAAGCCTGTGCTGTGTTTGGGGACGCTGTGTGCTGCCTTTCTCACCGGCCTGAAGCGGGTGTCAGAATACCGTAATCACTGCTCGGATGTCGTCGCTGGCTTCATCCTGGGAGCCTCCATTGCTCTGTTTTTGGGACTGTGTGTGGTGAATAACTTTAAAGGTGCTCACTCGACTCCTACCAAACGGAAGACGGAGGAATACCGCGGCCTCCCGCTCATGACGTTCCCCCGTGTGGAGAGCCCACTGGAGACCCTCAGCGCACAGaaccATTCAGCATCCATGACTGAAGTGACTTGACTAAGGGGCCGGCACAGAGTCACCTTCACTTCACCTCAACACTTCTAGGCACAAGATGTTTTTGTACTGTCgcatactgtaaaaaaaaaaaaaaaaagaaaaaaaagacaagaaatcAAAGAAAATAGTATTATGTTGGACCAAGTTAGAGGCaaatgttttgtacattttgtaaaacaCAGTGCTGTAGCTtatccttctgttttttttctgattccACATCAGGAGTTACACTTTCCTCGTCATGTTCTACATCACAAAGTCAAATCAAGTCTATATATGATGTTACTCAACTATTGATGTTATGTGGTATTTGTACAAAGAATtactttattcttattttttcctgTCAATTTTTTGACAAAGATCatcttttttgtattatttttatctgtataAAGCATTTTGATCAACATTGCCTGCTGTTTCTCCAGGAATGTTTTTggtattcttattttttttgatGTAATATAAAGATACACAATGAGTTGtgaaaagcagttttttttcctaatggCATCTTTAAAGTGTCATTACCACTGCATGAAAGTACACAGGCATTTGACGACGTTTCATTCTTGTGTATTGTTTTCCTTTTAAGGTTTCTTTTGAAAtgccaaatatatttttttgatttGTCTGTCAAATAAATAGTCTGTAGTTGAAA

Function

symbol description
plppr1 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to act upstream of or within nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system; neural tube; and somite. Orthologous to human PLPPR1 (phospholipid phosphatase related 1).

NR:

description
PREDICTED: lipid phosphate phosphatase-related protein type 1 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19581 LPPR1_2_5; lipid phosphate phosphatase-related protein type 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942846.2 True 1867 mRNA 0.46 8 17355099 17396817

Neighbor

gene id symbol gene type direction distance location
snx30 snx30,LOC107569385 coding upstream 142976 17189955 ~ 17212123 (+)
enoph1 enoph1,LOC107679042,LOC107702573,LOC107715850 coding upstream 231529 17114025 ~ 17123570 (+)
syk syk coding upstream 462200 16828162 ~ 16892899 (+)
LOC117599317 lysc coding upstream 550078 16802458 ~ 16805021 (+)
macir c16h5orf30,cunh5orf30,zgc:194281,LOC107665462,LOC107715868,LOC107564120,LOC107740794,LOC107670048 coding upstream 557788 16792626 ~ 16797311 (+)
LOC113544058 epha5,LOC108428864,LOC107702602 coding downstream 156114 17552931 ~ 17609585 (+)
lpar1 lpar1,LOC107554848,LOC107723319 coding downstream 268848 17665665 ~ 17688996 (+)
rassf6 rassf6 coding downstream 331801 17728618 ~ 17743596 (+)
tmem267 tmem267,si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107554852 coding downstream 354761 17751578 ~ 17758223 (+)
sigmar1 sigmar1,LOC107573076,LOC107653128 coding downstream 818766 18215583 ~ 18218914 (+)
G270893 NA non-coding upstream 62216 17277656 ~ 17292883 (+)
G270873 scd5 non-coding upstream 205680 17136712 ~ 17149419 (+)
G270872 NA non-coding upstream 214526 17129692 ~ 17140573 (+)
G270870 NA non-coding upstream 216118 17128017 ~ 17138981 (+)
G270856 NA non-coding upstream 267177 17087395 ~ 17087922 (+)
G271076 NA non-coding downstream 292839 17689656 ~ 17690861 (+)
G271102 NA non-coding downstream 362733 17759550 ~ 17764529 (+)
G271104 NA non-coding downstream 372952 17769769 ~ 17773380 (+)
G271235 NA non-coding downstream 728005 18124822 ~ 18125792 (+)
G271340 NA non-coding downstream 901305 18298122 ~ 18348384 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 254030 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 265721 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 265800 17089227 ~ 17089299 (+)
trnam-cau_41 NA other upstream 266499 17088529 ~ 17088600 (+)
trnar-ccu_12 NA other upstream 266578 17088449 ~ 17088521 (+)
G271406 NA other downstream 1007452 18404269 ~ 18407498 (+)
G271863 NA other downstream 1844892 19241709 ~ 19243905 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 1979275 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 2092389 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 2385610 19782427 ~ 19786831 (+)

Expression


Co-expression Network