ndufa8 (ndufa8,LOC107686420)


Basic Information

Item Value
gene id ndufa8
gene name ndufa8,LOC107686420
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 23163709 ~ 23169517 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942850.2
tCTTTAGGAATACGGGTAGGGGGAAAGATAACGTCGCTGACCGGGACGTTAAAACGGTTAGCAGCGAGTGGGCTGTTAGCCTTATTTTGATTAGGTTTGGCGTCTTTGTAAATCAAAATAATGCCCGATCAGGTTGATATTCCGACGTTGTCGGATTTGAACGTTGAAGAGgtAAACGTCTCGTCAGCCGTCCTGAAGGCCGCCGCGCATCACTACGGCTCGCAGTGCGACAAACCCAACAAGGAGTTCATGCTGTGCAGGTGGGAGGAGAAGGACCCCAGGAAGTGTCTGAACGAAGGGAGGAAAGTCAACGAGTGCGCACTTAATTTCTTCAGgcagattAAGGGGAACTGTGCCGAGTCGTTCACCGAGTACTGGACCTGTCTGGACTATTCCAACCTGGCCGAGCTCCGTCACTGCCGTAAGCAGCAGAAGCAGTTTGATAACTGTGTGTTGGAGAAGCTCGGCTGGGAGAGACCGGAACTGGGAGACCTGTCCAAGGTGACCAAGGTGGCGACCTCTCGGCCCCTTCCCGAGAACCCGTACCACTCGAGACCGAGACCCGAGCCCAACCCTGTGATCGACGCGCCGCTCGAGCCCGCCAAGCACGGCAGCCGTCTGTTTTTCTGGAACTGGTGAAGAGAGACGTTTCATTTTTCCCCACTGAACCCGCCGACGCTGCCCTCAGACATTTCCAGAACCTGACAGACGGACAGTAGCGGAACCGGTGCTTCAACCACAGCACCAGTCTGCTATCCTACttgtagaaatgtattaaataaacacagttattCATGTGTTGTGGATTAAATAAGTTTCATTCAAACTGg

Function

symbol description
ndufa8 Predicted to act upstream of or within mitochondrial electron transport, NADH to ubiquinone. Predicted to be located in mitochondrial inner membrane; mitochondrial intermembrane space; and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including alar plate midbrain region; liver; optic tectum; optic vesicle; and retina. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency. Orthologous to human NDUFA8 (NADH:ubiquinone oxidoreductase subunit A8).

NR:

description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

GO: NA

KEGG:

id description
K03952 NDUFA8; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942850.2 True 830 mRNA 0.53 4 23163709 23169517

Neighbor

gene id symbol gene type direction distance location
rbm18 rbm18,LOC107686423 coding upstream 42002 23104677 ~ 23121707 (+)
paqr3b paqr3b,LOC108276876,LOC108433513,LOC107713330,LOC107597624,LOC107744080 coding upstream 118631 23040466 ~ 23045078 (+)
antxr2b LOC108276875,LOC108433535,LOC107685134,LOC107597625,LOC107744079,LOC107686426 coding upstream 124160 23019928 ~ 23039549 (+)
rasgef1bb LOC108276874,LOC108433534,LOC107597626,LOC107686427,LOC107595538 coding upstream 147483 23005004 ~ 23016226 (+)
snx18b LOC108276851 coding upstream 206108 22948893 ~ 22957601 (+)
si:ch211-243g18.2 LOC108277365,LOC108433518,LOC107744167,LOC107685187,LOC107686498,LOC107713290 coding downstream 50628 23220145 ~ 23232035 (+)
LOC113543956 gpr21,LOC108433543,LOC107686419,LOC101884949,LOC107744074,LOC107597614,LOC107595548 coding downstream 173279 23342796 ~ 23345808 (+)
sh2d3ca sh2d3ca,LOC108277244,LOC108433546,LOC107713320,LOC107597612,LOC107744235 coding downstream 397197 23566714 ~ 23618521 (+)
urm1 urm1 coding downstream 454620 23624137 ~ 23640347 (+)
cercam cercam,LOC107744239,LOC107597609,LOC107685123 coding downstream 493102 23662619 ~ 23676630 (+)
G273719 NA non-coding upstream 27877 23135579 ~ 23135832 (+)
LOC117599346 NA non-coding upstream 89771 23068937 ~ 23073938 (+)
G273644 NA non-coding upstream 101364 23047921 ~ 23062345 (+)
G273683 NA non-coding upstream 125093 23037409 ~ 23038616 (+)
LOC117599377 NA non-coding upstream 168912 22992542 ~ 22994797 (+)
G273865 NA non-coding downstream 91529 23261046 ~ 23279789 (+)
G273880 NA non-coding downstream 116483 23286000 ~ 23333549 (+)
G273900 NA non-coding downstream 227291 23396808 ~ 23398531 (+)
G274161 NA non-coding downstream 506126 23675643 ~ 23677227 (+)
G274186 NA non-coding downstream 682480 23851997 ~ 23852218 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 18142 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 498139 22622428 ~ 22665570 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other upstream 788834 22369256 ~ 22374875 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other upstream 1129712 21922551 ~ 22033997 (+)
LOC113543995 NA other upstream 1684829 21476087 ~ 21478880 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other downstream 75043 23244560 ~ 23274653 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other downstream 112044 23281561 ~ 23386107 (+)
cdc37l1 LOC108276758,LOC108433523 other downstream 768461 23937978 ~ 23940132 (+)
hsdl2 hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110 other downstream 933556 24103073 ~ 24112853 (+)
LOC117599389 NA other downstream 1056637 24226154 ~ 24232819 (+)

Expression


Co-expression Network