gmcl1 (gmcl1,LOC107688092,LOC106564898)


Basic Information

Item Value
gene id gmcl1
gene name gmcl1,LOC107688092,LOC106564898
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20684972 ~ 20697663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942866.2
AGCACAAAGCTAAACACAtttcaataaaaacaacagagaaagtgttgtgtttgttggtgtttgctTTTGTTCAATATTAGCGACCTTTAGGTTTTCCAGACATGTAGACAACAGTGTAGCTCAGTGATTAGAAGTTAGACTGTTACAGAATggataaatgtttaatttagttGTAAAGAAGTCTGAGTGACGGgtgtagctgtgtgttttggagtgTGAGAGGAAAGTGCAGCCTGATTAGCATCGCAGTGTTTCTTCCTCCAGTGGATTTCCAGGTCGGAGAAGGATGGGGTCGCTCGGGAGTCGTTTTCAAGCCGCTCCCCACCGCCTCAGCGAGACGCCGCAACCTCGCTGCGCAGGAAGCACACACGCCTGTGAGTGCAAGAAGAGGAAACGAAGCTCACACTGCGAATGTGACAGTGAGCCAGAGGAAGAGGACAGTCTGCTGGACACACCGtgcagGAAAAAGCTGAAAAGCACGTCTAAGTACATTTATCAGACGCTGTTCCTGAACGGGGAGAACAGCGACATCCGGATCTGTGCGCTCGGCCAGGAGTGGAACCTGCACAAAGTTTACCTGTGTCAGTCGGGATACTTCTCCAGCATGTTCAGTGGCTCCTGGAAGGAATCCAACATGATGGTCATCCAGTTGGAGATCCCAGATCAGAATATCGACACAGAAGctcttcAGGTGGTGTTTGGCTCCCTCTACAGGGACGACGTTCTGATCAAACCCAGCCGAGTTGTCAGTATCCTGGCTGCTGCCTGCATGCTCCAGCTGgatggGCTAATCCAGCAGTGTGGTGAAACCATGAAGGAGAACATTAGTGTGAAGACGGTGTGTGGCTTCTATGCCGCTGCTAACATGTACGGCCTGGACTCTGTCACAAAGAAGTGTTTGGAGTGGCTGCTCAATAACCTGATGACCCATCAAAATGTGGACCTCATGAAGGAGCTGGGGGTTGAAATCATCGAGCAGCTGATTCAGTCATCAGATCTTTTTGTCATGCAAGTGGAGATGGACGTGTACACTGCTCTGAAGAAGtggatgttcctgcagctcaaTCCTTCATGGGATGGTCCCATCAAGCAGCTTCTGGTCGATGCAGATACGTGGCTCTGTAAAAGAAGAAGTGAGCTGGGAGAGGAGGAGCCATTTCTGTGCACGGAGCAGGGCTCACCTTTTACCCCCGTCTTCAGACACGTCCGCCTGCAGTACATCATCAACGACCTGGCCTCGGCCCGCATCCTCGAGAGGGATAACATCATTCCACCCGACTGGTTGTCCAGGATATACAAGCAGCAGTGGTTCGCCATGCTTCGAACAGAGCATGACAATGACAACGGACCCCAAGAGGCCAATAAGGAGGAATTTGAACAGAACAGCATGCGCTGCGGTCGAAAGCTAAACAAAGATGGAGATTACTGCTGGAGATGGACAGGTTTTAATTACGGGTTCGATCTGCTGGTCACCTACACCAACCGCTTCATTGTGTTCAAGAGGAATACGCTCAGTCAGCCGTGCGGGGGTGCGGTCAGCCTGCAGCCACGACGACACCTTGCTTTCAGGTTACGGCTCGCGTCGTTCGACAGCTGTGGCAAACTGATCTGCAGCCGCTCTACAGGCTACCAGCTGCTCACTCTGGAGAAAGATCAGgagtacGTGGTGATGAACCTGGACAGCCGTCTCCTGTCTTTCCCACTCTACGTCTGCTGTAACTTCCTGTACACTTCCCCCTCCCCCGAGCGCCGGGTCGACACCGGCGAATCAGAAAGCAGCACCCGCAGCAAGTCGTGACCCTCCGGCCAATAAGCTCCATCCTGATCTTGTGACATCATCACTTCGTaccactcactcactttttACCATCAGTTTTCTATACCTTGCgttatttttacctttttttaaagtgtatactgattgtattaatttgttttattttacttctatatttatttctgaattttggattttttttatgcttttggtATAATTAAACCCAAAACAAACCACAGACACAGTGAGTGCATGTTAATTTTACTTCTTCCGTTGTTGAAATTAGTTTTGTATGAAGATAACCGTTGTGTTCTTGTGTTTGTTCATACTGTATATGGCTCTGATTTTGCCAGGCATTCctatttattcagtgtttttgtactgtttaaagaaaaaaaaaaactggtgctggtgcttttttttctacaggatgctttttttttttcttccagtgcAGCTCTACTCCAAGTTACACAGACATCACTTCTGGACAATTGGCCATTTCATATTTTCCATAAttctgtaattatattatattgtgaaTATGTACACATGATGATGAATGTGTCCTGGTTAAATGTAGATGACGTGTGCATTATGGACCAAAATAAGATCATTCAGGCACAAGGATCTAATCAGCGCTGGCTGGTGTGTGATCAGACGAGAGCCTAAtcgcaaaaaataaaatgatgaaaaactgC

Function

symbol description
gmcl1 Predicted to act upstream of or within germ cell development. Is expressed in blastomere; ovary; and testis. Orthologous to several human genes including GMCL1 (germ cell-less 1, spermatogenesis associated).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K10485 BTBD13, GMCL1, GCL; BTB/POZ domain-containing protein 13 (germ cell-less protein-like 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942866.2 True 2478 mRNA 0.47 15 20684972 20697663

Neighbor

gene id symbol gene type direction distance location
snx24 snx24 coding upstream 14485 20663103 ~ 20670487 (+)
loxa lox,LOC108277371,LOC107562574 coding upstream 23877 20647807 ~ 20661095 (+)
mpx LOC100335032 coding upstream 61031 20608815 ~ 20623941 (+)
sftpba LOC108276523 coding upstream 342589 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 371715 20303730 ~ 20313257 (+)
pcyox1 pcyox1 coding downstream 4852 20702515 ~ 20711026 (+)
stard7 stard7,LOC107713384,LOC107687872 coding downstream 52510 20750173 ~ 20761668 (+)
smarcad1b LOC108277297 coding downstream 146662 20844325 ~ 20864250 (+)
ska1 ska1 coding downstream 166902 20864565 ~ 20870543 (+)
slc2a11l LOC108277148 coding downstream 173714 20871377 ~ 20880169 (+)
G272427 NA non-coding upstream 24678 20565033 ~ 20660294 (+)
G272426 NA non-coding upstream 120908 20562176 ~ 20564064 (+)
G272361 NA non-coding upstream 219926 20409723 ~ 20465046 (+)
G272360 NA non-coding upstream 237294 20442699 ~ 20447678 (+)
G272347 NA non-coding upstream 375096 20309591 ~ 20309876 (+)
G272450 NA non-coding downstream 18848 20716511 ~ 20737500 (+)
G272470 NA non-coding downstream 51698 20749361 ~ 20749647 (+)
G272770 NA non-coding downstream 229959 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 292680 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 782237 21479900 ~ 21492672 (+)
G272408 NA other upstream 142018 20540325 ~ 20542954 (+)
G272374 NA other upstream 255829 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 286025 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 741467 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 836146 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 661856 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 778424 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1224888 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1671593 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1924765 22622428 ~ 22665570 (+)

Expression


Co-expression Network