hvcn1 (hvcn1)


Basic Information

Item Value
gene id hvcn1
gene name hvcn1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20303730 ~ 20313257 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942867.2
CACAGCAGAGGCGGAGTTTTTAGGAGGGTCAAAGTTTTATCCAAACAAATGGAGACTTTCATCTAAAGACTATCAACATTTCTAACTTTTTAAAGACTTTCACTCGACACCTGAGCTGTAAATCAACTAACCGAACATTCGGCGGAAAGAGCTTCGTAGCTGTTAGTTGCTGAGTGGGTGATTTGGATTGACCATGGTCCGGTTTTTGAGGTTTTTCACGGTGGTGGGCGACGACCACCACGGTGCCTCAAAGTGGAATGAAGAAGAACTACACAAAGTTACCGAAGACCGGGAGCCTGTAAAACAACCGGCCACACGGCTGACATTCAGAGATGCTCTGAAAAGTCTCTTCAGCTCGGAGAAATTTCAGATAGCTGTTGTGTGCTTGGTGATCTTGGATGCCTTATTTGTTCTGTGTGAGCTGCTCTTAGACCTGTCTATAATCGAAGCGGACCAGCACCACATCGCTCCACAGGTGTTTCACTACCTCAGCCTGGCGCTGCTCACCTTCTTCTTAGTGGAGCTGGGCTTTAAGCTGTACGCGTATCGGCTCGAGTTTTTCCACCACAAGTTTGAGGTGTTTGATGCGATCGTCGTGATTGTGTCCTTCATCCTAGATATCGTGTACATCTCCAAAGAAAACGCCTTTGATGGCATGGGCCTACTCATCCTGCTCAGGCTGTGGAGGGTGGCCAGGATCATTAATGGTATTCTGTTGTCAGTGAAGAGTCAAGCTAATCACAAAGTGCACaagctgaaagaggaaaatgATAATCTCCTCCATCAAATCAGCGAGCTGCAAGAGCAGAAAATTGCAATGGAGCAAGAGGTCAGCAAGCTGAGAGCACTCTTAACAAAGCACTCCATCCAGTACTGATGACCGTATCTCACCATTACCAGCTGTACAAAATACTCgttataattcattatgaatatgggccagtgaagggaaatataGTAAACTAACAATCTATAGCTCAGAGTTCTAGTTTCGTATTTAACGCCAGTGCTACAAGCCAGAATCAAGGATGATAAATTTTAGCTATACCAATGCTATACCAATGCAGCTTTCTGAACAACAAGGCCCTGAAGGAGTGTTCAGAGTAGGAATGTGCTGACAGTAAATCATTATAGAGTAACTGTTACttaataacattaacaaaattACAGGCTCAACTAAAACATGTCACTCAGGATTTCTGACCTCTGACTAGGACAAACTTAGAATTCGTAATTGGAAAGTTGGGACAGTCTCCTTAATCCCGAGTTGTCAAATCAACACGTCTGCTCACGGCATCACCATTAAACGAAGTAGCCCCTCAAGTTATACTGTCCACacttgtatttgttttagatcaatcaacatattagcttgttaaatctataacactgactgttCAGTTCGCTGTATACagttgaggaggtaaatatacattaGTCAGTTAGCTGGCTGGATTTTTGCTtagaaaagacaaacatggaggcatccatgtttttataACTCGCTATGTAGcttgaacacacacagtttgaaACTGACGTAATTCTGAGTTCCAACTTCCCACATCTGAGTTAAGTGGAGTGCAGCATCTGTGATGGTACTGGCcaccatgtgtttttt

Function

symbol description
hvcn1 Enables voltage-gated proton channel activity and zinc ion binding activity. Acts upstream of or within proton transmembrane transport and response to zinc ion. Is integral component of plasma membrane. Is expressed in several structures, including eye; heart; liver; neutrophil; and pleuroperitoneal region. Orthologous to human HVCN1 (hydrogen voltage gated channel 1).

NR:

description
PREDICTED: voltage-gated hydrogen channel 1

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K22644 HVCN1, HV1; voltage-gated hydrogen channel 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942867.2 True 1621 mRNA 0.43 6 20303730 20313257

Neighbor

gene id symbol gene type direction distance location
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 88976 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 148927 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 180021 20117525 ~ 20123709 (+)
itga1 itga1 coding upstream 193429 20050618 ~ 20110301 (+)
LOC113543999 LOC108277114 coding upstream 280016 20018366 ~ 20023714 (+)
sftpba LOC108276523 coding downstream 17229 20330486 ~ 20342383 (+)
mpx LOC100335032 coding downstream 295558 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 334550 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 349846 20663103 ~ 20670487 (+)
gmcl1 gmcl1,LOC107688092,LOC106564898 coding downstream 371715 20684972 ~ 20697663 (+)
G272305 NA non-coding upstream 63384 20239894 ~ 20240346 (+)
G272249 plpp1 non-coding upstream 77037 20223477 ~ 20226693 (+)
G272246 NA non-coding upstream 295533 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 478498 19817178 ~ 19825232 (+)
G271923 NA non-coding upstream 818826 19482497 ~ 19484904 (+)
G272361 NA non-coding downstream 96466 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 129442 20442699 ~ 20447678 (+)
G272426 NA non-coding downstream 248919 20562176 ~ 20564064 (+)
G272427 NA non-coding downstream 251776 20565033 ~ 20660294 (+)
G272448 NA non-coding downstream 346346 20659603 ~ 20725194 (+)
gfra2b gfra2 other upstream 360225 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 454904 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 473462 19825962 ~ 19830268 (+)
G272180 NA other upstream 478498 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 516899 19782427 ~ 19786831 (+)
G272367 LOC108276637 other downstream 85023 20398280 ~ 20398947 (+)
G272374 NA other downstream 110142 20423399 ~ 20429143 (+)
G272408 NA other downstream 227068 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1046262 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1162830 21476087 ~ 21478880 (+)

Expression


Co-expression Network