tpst2 (tpst2,ubc)


Basic Information

Item Value
gene id tpst2
gene name tpst2,ubc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7855327 ~ 7858825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943621.2
AAGTGCCTCTTTCTTCCAACCCGCCTACTTCCTGAAGCTGTTTGTATTTTATCTGAGCTGGTATTTTTTACATGTTGCCTTCTGTGCTTTCTACaacttttattgaaaaaaaatggttgaaGAATGGATTACTATGAAGATGAGGAATGTAGCTGCAGGTGTTAGTATACAATGCCAGATTTCTCACTAGATGGCCAGCTAACTGAGTGATGCGGCTGTCTGTTCGACGGGGATTCATACTGCTATTGTGTCTGTTTGGACTGTATGCTGCTGTGAAAGCACTGTACTATATGCTTATATGCCAGAGTGGATATCCTCATAGCCTAGGAGTGTCAGTACTAGTTAAGGGCAGCAATCAGACCCTATACCACTACAGCCAGGACTCACcaatggtgtttgttggtggaGTACCTCGCTCAGGCACCACGCTGATGCGTGCTATGCTTGATGCCCACCCGGATATCCGCTGTGGAGAGGAGACCCGGGTGATCCCCCGGCTTCTGGCTCTGCGTCATGGCTGGAGGAGGTCGGCAGAAGACCGCTGGGCCCTGGATGAAGAAGAGATCACCCAGGAGATGCTGGACTCAGCCACAGCTGCCTTCTTGCTTGAGGTCATTGCTCGTCATGGTGAGCCTGCACCGCTGCTCTGCAATAAGGACCCATTTACGCTGAAGAGCTCCATCTACCTCTCTAAATTATTTCCCAACTCAAAGTTTCTTCTTATGGTACGTGATGGTCGGGCCTCAGTGCACTCTATGATCTCAAGACAAGTTACAATTGCTGGTTTTGACCTTTCCAGCTACAGGGACTGCCTTAGCAAGTGGAGCCAAGCAATAGAGGTCATGTTATTTCAGTGCACATTGGTAGGTTCTACACGCTGTCTGACCATTCGCTATGAAAATTTGGTCCTGCAGCCACGCACCACAATGGTGAAAGTACTGGAGTTCCTGAATGTACCATGGCATGAGGGGGTACTTCACCATGAGGAAGCTATTGGGCAGCCTGGAGGAGTTTCTTTATCTCGAATAGAGCGCTCCACTGACCAGGTCATCAAACCAGTTAACCTAGAGGCACTCACTCGCTGGGTAGGCCACATTCCAACTGATGTTCTAAAAGATATGGATAATATTGCTCCAATGCTTAACAAGCTGGGCTATGACCCCACTGCCAATCCCCCAGACTATGGCCAACCAGATCCCGAAGTGATTCATAATACAGAAAGGGTGCTCAAGGGAGATTTTAAGCCTCCAGCAAGTTTGAAAAGACCATCACAAGAAAGTATGAcataaaaatatctgtatatatctggtccttttttatattttaattaagtgCAGGttaaaacatgttccagcaagacaatgctCCGCGCACAAATTTTACACCTATTGACATGTTTTCgtgaggtggaaggaaacccacgtggacactaggagaacatgcagaactccacacatacagtaacctGCAATGCTACACGCACTCTACCATCCTGCTCATGTTggaacactgtttttttttattactgtttgtaGTTTAAACTACACAATTGTATTGTAATTTTTGACAAATATAGagaaaaattataattaaagttGTAACAAATGATAAGAGTTAACAAAA
>XM_026943622.2
ATGAAAAGTGCCTCTTTCTTCCAACCCGCCTACTTCCTGAAGCTGTTTGTATTTTATCTGAGCTGGTATTTTTTACATGTTGCCTTCTGTGCTTTCTACaacttttattgaaaaaaaatggttgaaGAATGGATTACTATGAAGATGAGGAATGTAGCTGCAGGTGTTAGTATACAATGCCAGATTTCTCACTAGAGTTTCTGCTGTCTGTTGGCTTTTCTGAATACAGTGGCCAGCTAACTGAGTGATGCGGCTGTCTGTTCGACGGGGATTCATACTGCTATTGTGTCTGTTTGGACTGTATGCTGCTGTGAAAGCACTGTACTATATGCTTATATGCCAGAGTGGATATCCTCATAGCCTAGGAGTGTCAGTACTAGTTAAGGGCAGCAATCAGACCCTATACCACTACAGCCAGGACTCACcaatggtgtttgttggtggaGTACCTCGCTCAGGCACCACGCTGATGCGTGCTATGCTTGATGCCCACCCGGATATCCGCTGTGGAGAGGAGACCCGGGTGATCCCCCGGCTTCTGGCTCTGCGTCATGGCTGGAGGAGGTCGGCAGAAGACCGCTGGGCCCTGGATGAAGAAGAGATCACCCAGGAGATGCTGGACTCAGCCACAGCTGCCTTCTTGCTTGAGGTCATTGCTCGTCATGGTGAGCCTGCACCGCTGCTCTGCAATAAGGACCCATTTACGCTGAAGAGCTCCATCTACCTCTCTAAATTATTTCCCAACTCAAAGTTTCTTCTTATGGTACGTGATGGTCGGGCCTCAGTGCACTCTATGATCTCAAGACAAGTTACAATTGCTGGTTTTGACCTTTCCAGCTACAGGGACTGCCTTAGCAAGTGGAGCCAAGCAATAGAGGTCATGTTATTTCAGTGCACATTGGTAGGTTCTACACGCTGTCTGACCATTCGCTATGAAAATTTGGTCCTGCAGCCACGCACCACAATGGTGAAAGTACTGGAGTTCCTGAATGTACCATGGCATGAGGGGGTACTTCACCATGAGGAAGCTATTGGGCAGCCTGGAGGAGTTTCTTTATCTCGAATAGAGCGCTCCACTGACCAGGTCATCAAACCAGTTAACCTAGAGGCACTCACTCGCTGGGTAGGCCACATTCCAACTGATGTTCTAAAAGATATGGATAATATTGCTCCAATGCTTAACAAGCTGGGCTATGACCCCACTGCCAATCCCCCAGACTATGGCCAACCAGATCCCGAAGTGATTCATAATACAGAAAGGGTGCTCAAGGGAGATTTTAAGCCTCCAGCAAGTTTGAAAAGACCATCACAAGAAAGTATGAcataaaaatatctgtatatatctggtccttttttatattttaattaagtgCAGGttaaaacatgttccagcaagacaatgctCCGCGCACAAATTTTACACCTATTGACATGTTTTCgtgaggtggaaggaaacccacgtggacactaggagaacatgcagaactccacacatacagtaacctGCAATGCTACACGCACTCTACCATCCTGCTCATGTTggaacactgtttttttttattactgtttgtaGTTTAAACTACACAATTGTATTGTAATTTTTGACAAATATAGagaaaaattataattaaagttGTAACAAATGATAAGAGTTAACAAAA
>XM_026943623.2
CAATTGTGCATTTTTCAGTCAGTCTCTTCTGTTTCCTGTTACTTGAAAATTGTCTGCATGTTGAAACACGAAATGAAAAGTGCCTCTTTCTTCCAACCCGCCTACTTCCTGAAGCTGTTTGTATTTTATCTGAGCTGGTATTTTTTACATGTTGCCTTCTGTGCTTTCTACaacttttattgaaaaaaaatggttgaaGAATGGATTACTATGAAGATGAGGAATGTAGCTGCAGGTGTTAGTATACAATGCCAGATTTCTCACTAGAGTAAGTTGCTAAAATCTCTTTGCCTCTTCAAggaatattgtaaataaacagGTTCTGTGACTAGTGGTGTCACAACATGAAATATTATAAGAATTATGTATGCCCATTAGCAGTTTTGCATTTTATCTCGTGTTTGgttaaaagaatttaaaatcataatcaaGCTTCCTTGTCATGCGAGGAAGTTGTTTCAGGAAGTCCTTTAGCTGACATGTTAGAAGTACAAAAATATGCACACATCCTCCTTATTAGAGATTTCAAACCAGGTCTTTTGCGTAAAACTCTTAGTCATTAATGAACTTCAAGCATCATTCTGGTGAAGGCACACTTGCGGTGCAAGTCATGCAAATGAGCAGTGCTTGCATttggtatttttttattgtacaacATTTTTTAGTACTGCAATAAGCATTACTCATTACAGAAATGCAGTAACAAAACAATGTTCTAACAAATATGATGTTACTTTTTCTGGGCCATTGTGCCtgcaaacattttcaaaacacttCGAAAAAGTGTGAATTCTGGAAGACTTAGATTATCTGATTGTACTGTAACTGATTGTAATAGAGGAAGTTGGGTGAGTTCCTCATTTTCACACGTTGTCTTTGCTTATATGTAAAACTACTCACACTGACAGGTTTCTGCTGTCTGTTGGCTTTTCTGAATACAGTGGCCAGCTAACTGAGTGATGCGGCTGTCTGTTCGACGGGGATTCATACTGCTATTGTGTCTGTTTGGACTGTATGCTGCTGTGAAAGCACTGTACTATATGCTTATATGCCAGAGTGGATATCCTCATAGCCTAGGAGTGTCAGTACTAGTTAAGGGCAGCAATCAGACCCTATACCACTACAGCCAGGACTCACcaatggtgtttgttggtggaGTACCTCGCTCAGGCACCACGCTGATGCGTGCTATGCTTGATGCCCACCCGGATATCCGCTGTGGAGAGGAGACCCGGGTGATCCCCCGGCTTCTGGCTCTGCGTCATGGCTGGAGGAGGTCGGCAGAAGACCGCTGGGCCCTGGATGAAGAAGAGATCACCCAGGAGATGCTGGACTCAGCCACAGCTGCCTTCTTGCTTGAGGTCATTGCTCGTCATGTTTTCTTATACTATGCTTTCAGCTCAAAGTTTCTTCTTATGGTACGTGATGGTCGGGCCTCAGTGCACTCTATGATCTCAAGACAAGTTACAATTGCTGGTTTTGACCTTTCCAGCTACAGGGACTGCCTTAGCAAGTGGAGCCAAGCAATAGAGGTCATGTTATTTCAGTGCACATTGGTAGGTTCTACACGCTGTCTGACCATTCGCTATGAAAATTTGGTCCTGCAGCCACGCACCACAATGGTGAAAGTACTGGAGTTCCTGAATGTACCATGGCATGAGGGGGTACTTCACCATGAGGAAGCTATTGGGCAGCCTGGAGGAGTTTCTTTATCTCGAATAGAGCGCTCCACTGACCAGGTCATCAAACCAGTTAACCTAGAGGCACTCACTCGCTGGGTAGGCCACATTCCAACTGATGTTCTAAAAGATATGGATAATATTGCTCCAATGCTTAACAAGCTGGGCTATGACCCCACTGCCAATCCCCCAGACTATGGCCAACCAGATCCCGAAGTGATTCATAATACAGAAAGGGTGCTCAAGGGAGATTTTAAGCCTCCAGCAAGTTTGAAAAGACCATCACAAGAAAGTATGAcataaaaatatctgtatatatctggtccttttttatattttaattaagtgCAGGttaaaacatgttccagcaagacaatgctCCGCGCACAAATTTTACACCTATTGACATGTTTTCgtgaggtggaaggaaacccacgtggacactaggagaacatgcagaactccacacatacagtaacctGCAATGCTACACGCACTCTACCATCCTGCTCATGTTggaacactgtttttttttattactgtttgtaGTTTAAACTACACAATTGTATTGTAATTTTTGACAAATATAGagaaaaattataattaaagttGTAACAAATGATAAGAGTTAACAAAA
>XM_034312497.1
AGGGAAGGGTGGCTGTGTAAAGCAGTTGGACAGAAGGTGAATAATTGAAAAAGTGACTGGTTTTACTATCCAATTTGAATATTATGCACTTATGACAGGAGCTgtcttgtttaaaaaaTGGCCAGCTAACTGAGTGATGCGGCTGTCTGTTCGACGGGGATTCATACTGCTATTGTGTCTGTTTGGACTGTATGCTGCTGTGAAAGCACTGTACTATATGCTTATATGCCAGAGTGGATATCCTCATAGCCTAGGAGTGTCAGTACTAGTTAAGGGCAGCAATCAGACCCTATACCACTACAGCCAGGACTCACcaatggtgtttgttggtggaGTACCTCGCTCAGGCACCACGCTGATGCGTGCTATGCTTGATGCCCACCCGGATATCCGCTGTGGAGAGGAGACCCGGGTGATCCCCCGGCTTCTGGCTCTGCGTCATGGCTGGAGGAGGTCGGCAGAAGACCGCTGGGCCCTGGATGAAGAAGAGATCACCCAGGAGATGCTGGACTCAGCCACAGCTGCCTTCTTGCTTGAGGTCATTGCTCGTCATGGTGAGCCTGCACCGCTGCTCTGCAATAAGGACCCATTTACGCTGAAGAGCTCCATCTACCTCTCTAAATTATTTCCCAACTCAAAGTTTCTTCTTATGGTACGTGATGGTCGGGCCTCAGTGCACTCTATGATCTCAAGACAAGTTACAATTGCTGGTTTTGACCTTTCCAGCTACAGGGACTGCCTTAGCAAGTGGAGCCAAGCAATAGAGGTCATGTTATTTCAGTGCACATTGGTAGGTTCTACACGCTGTCTGACCATTCGCTATGAAAATTTGGTCCTGCAGCCACGCACCACAATGGTGAAAGTACTGGAGTTCCTGAATGTACCATGGCATGAGGGGGTACTTCACCATGAGGAAGCTATTGGGCAGCCTGGAGGAGTTTCTTTATCTCGAATAGAGCGCTCCACTGACCAGGTCATCAAACCAGTTAACCTAGAGGCACTCACTCGCTGGGTAGGCCACATTCCAACTGATGTTCTAAAAGATATGGATAATATTGCTCCAATGCTTAACAAGCTGGGCTATGACCCCACTGCCAATCCCCCAGACTATGGCCAACCAGATCCCGAAGTGATTCATAATACAGAAAGGGTGCTCAAGGGAGATTTTAAGCCTCCAGCAAGTTTGAAAAGACCATCACAAGAAAGTATGAcataaaaatatctgtatatatctggtccttttttatattttaattaagtgCAGGttaaaacatgttccagcaagacaatgctCCGCGCACAAATTTTACACCTATTGACATGTTTTCgtgaggtggaaggaaacccacgtggacactaggagaacatgcagaactccacacatacagtaacctGCAATGCTACACGCACTCTACCATCCTGCTCATGTTggaacactgtttttttttattactgtttgtaGTTTAAACTACACAATTGTATTGTAATTTTTGACAAATATAGagaaaaattataattaaagttGTAACAAATGATAAGAGTTAACAAAA
>XM_034312498.1
AGAATATGAAGTGTCAATATGAACAGACCTGCTGTTGTGGATGAATTCTCAAATGCAGAGGAAGTGATGTATATAGCTCCTGACAATTCCACTGCTACCCTACCTCCCCAACCTCCCAAAACTCCAAATCTGCAGGATGCAAGGCAGCTAAATcagTGGCCAGCTAACTGAGTGATGCGGCTGTCTGTTCGACGGGGATTCATACTGCTATTGTGTCTGTTTGGACTGTATGCTGCTGTGAAAGCACTGTACTATATGCTTATATGCCAGAGTGGATATCCTCATAGCCTAGGAGTGTCAGTACTAGTTAAGGGCAGCAATCAGACCCTATACCACTACAGCCAGGACTCACcaatggtgtttgttggtggaGTACCTCGCTCAGGCACCACGCTGATGCGTGCTATGCTTGATGCCCACCCGGATATCCGCTGTGGAGAGGAGACCCGGGTGATCCCCCGGCTTCTGGCTCTGCGTCATGGCTGGAGGAGGTCGGCAGAAGACCGCTGGGCCCTGGATGAAGAAGAGATCACCCAGGAGATGCTGGACTCAGCCACAGCTGCCTTCTTGCTTGAGGTCATTGCTCGTCATGGTGAGCCTGCACCGCTGCTCTGCAATAAGGACCCATTTACGCTGAAGAGCTCCATCTACCTCTCTAAATTATTTCCCAACTCAAAGTTTCTTCTTATGGTACGTGATGGTCGGGCCTCAGTGCACTCTATGATCTCAAGACAAGTTACAATTGCTGGTTTTGACCTTTCCAGCTACAGGGACTGCCTTAGCAAGTGGAGCCAAGCAATAGAGGTCATGTTATTTCAGTGCACATTGGTAGGTTCTACACGCTGTCTGACCATTCGCTATGAAAATTTGGTCCTGCAGCCACGCACCACAATGGTGAAAGTACTGGAGTTCCTGAATGTACCATGGCATGAGGGGGTACTTCACCATGAGGAAGCTATTGGGCAGCCTGGAGGAGTTTCTTTATCTCGAATAGAGCGCTCCACTGACCAGGTCATCAAACCAGTTAACCTAGAGGCACTCACTCGCTGGGTAGGCCACATTCCAACTGATGTTCTAAAAGATATGGATAATATTGCTCCAATGCTTAACAAGCTGGGCTATGACCCCACTGCCAATCCCCCAGACTATGGCCAACCAGATCCCGAAGTGATTCATAATACAGAAAGGGTGCTCAAGGGAGATTTTAAGCCTCCAGCAAGTTTGAAAAGACCATCACAAGAAAGTATGAcataaaaatatctgtatatatctggtccttttttatattttaattaagtgCAGGttaaaacatgttccagcaagacaatgctCCGCGCACAAATTTTACACCTATTGACATGTTTTCgtgaggtggaaggaaacccacgtggacactaggagaacatgcagaactccacacatacagtaacctGCAATGCTACACGCACTCTACCATCCTGCTCATGTTggaacactgtttttttttattactgtttgtaGTTTAAACTACACAATTGTATTGTAATTTTTGACAAATATAGagaaaaattataattaaagttGTAACAAATGATAAGAGTTAACAAAA

Function

symbol description
ubc Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBC (ubiquitin C).
tpst2 Predicted to enable protein-tyrosine sulfotransferase activity. Predicted to be involved in peptidyl-tyrosine sulfation. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human TPST2 (tyrosylprotein sulfotransferase 2).

NR:

description
protein-tyrosine sulfotransferase 2-like isoform X1

GO:

id name namespace
GO:0006478 peptidyl-tyrosine sulfation biological_process
GO:0008476 protein-tyrosine sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943621.2 False 1623 mRNA 0.45 5 7856028 7858825
XM_026943622.2 False 1661 mRNA 0.45 5 7856023 7858825
XM_026943623.2 True 2316 mRNA 0.41 4 7855951 7858825
XM_034312497.1 False 1550 mRNA 0.45 5 7855552 7858825
XM_034312498.1 False 1588 mRNA 0.46 5 7855327 7858825

Neighbor

gene id symbol gene type direction distance location
LOC113544796 myo18b,LOC108276812 coding upstream 84883 7718055 ~ 7770444 (+)
grk3 grk3,LOC108276813 coding upstream 137978 7628081 ~ 7717349 (+)
cryba4 cryba4,LOC103045114 coding upstream 234754 7618299 ~ 7620573 (+)
LOC117599324 il1b coding upstream 420401 7432541 ~ 7434926 (+)
oclna LOC108276968 coding upstream 461847 7384282 ~ 7393480 (+)
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding downstream 2041 7860866 ~ 7864143 (+)
scarb1 scarb1 coding downstream 31216 7890041 ~ 7910255 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding downstream 78403 7937228 ~ 7944128 (+)
LOC117595648 NA coding downstream 341255 8200080 ~ 8217268 (+)
LOC113544932 NA coding downstream 416222 8275047 ~ 8276323 (+)
G265420 NA non-coding upstream 3062 7851915 ~ 7852265 (+)
G265419 NA non-coding upstream 3698 7851370 ~ 7851629 (+)
G265418 NA non-coding upstream 6293 7848803 ~ 7849034 (+)
G265383 NA non-coding upstream 7450 7844793 ~ 7847877 (+)
G265417 NA non-coding upstream 10671 7843789 ~ 7844656 (+)
LOC117599395 NA non-coding downstream 116834 7975659 ~ 7977423 (+)
G265490 hapln1,LOC108261073,LOC108425247 non-coding downstream 123834 7982659 ~ 7986096 (+)
G265520 NA non-coding downstream 236578 8095403 ~ 8097573 (+)
G265544 NA non-coding downstream 330355 8189180 ~ 8189799 (+)
G265553 NA non-coding downstream 337756 8196581 ~ 8253208 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 729081 7116051 ~ 7126246 (+)
G264948 NA other upstream 772886 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 1660646 6169893 ~ 6194681 (+)
G264336 NA other upstream 1843425 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2774684 5077853 ~ 5080643 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 316689 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 470880 8329705 ~ 8353841 (+)
G265696 NA other downstream 774810 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 809989 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 1398118 9256943 ~ 9264111 (+)

Expression


Co-expression Network