polm (polm)


Basic Information

Item Value
gene id polm
gene name polm
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6030980 ~ 6038104 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943637.2
AGGTTTCTGACGTCACTGTGCTGCACTTCTACAACCTCTGCTTTCAGAAATCACTGGTTTGTTGTTGTGCTGAAGTGACTCGTGAGTCACTCTCTGAGCCAGACAAATCAATAACAATGCATATTTATTAGCTGTATAACTTCCTGTCATGACAGTAAACAGATTGCATTCTTAAAACCACTAATAAGTTGTTGAGGTTTTTAGTTATGGTAGCTATCTGGCTAGCAGTGCCACACAGATAATGGTTCCCCTAAAACGCAGGAAGGTGACTACAGAGCAAACTGCAAGTCATGACAGTAAAGCGTGCAAATTTCCTGATATTGTCATATTCATCGTGGAAAGGAAGATGGGTGCGTCCAGAAAAGCTTTCCTGACGCGTCTTGGAAGGAGTAAAGGGTTTCTGATTGAAGAATCTTACAGCTCCTCCATCACACATGTGGTGTCAGAAAACAACACTGGAGATGAGGTTGACATTTGGATTAAGAAACAGGAAATTGAAGGAAAAGTCTCAACCAAGTCAGTCAATCTGCTGCACATCAGTTGGTTGACTGAGAGCATGGCGAGCGGAAATCCTGTCCCCATTCAGGACAGACACAGGTTAAAGACCAGCCCGAAGCCCTGTGAGGTCACTCCTGCAATTATAATGAAGAGTTACGCTTGTCAGAGGAGAACTCCACTGAAGCACCACAACTCATTCCTTACAGAACCTCTGGAGATCTTAGCCGAGAATGCAGAGTTCAGTGAGAATGAAGGCAGGAGCTTAGCTTTCCGAAGGTCGGCGGCTGTCTTGAAGGCACTTCCTCGTGCCGTGCGTGCGATGGACGAATTGAAGGACTTGCCCTGCTTGGGTGAGCATTCACTGAGAGTTATAAAGGAGATTTTAGAAGATGGCGCATCAAGTGAAGTGGAATCAACCAGACAGTCTGAGCAGTTTCAAGCCATGAAGGCACTGACTGGTGTTTTTGGTGTAGGAGTAAGGACTGCGGATCGGTGGTTTAGGGAAGGCCTACGTAGCCCGTTAGACCTTATACACACAGGGCAAAAGCTGAACCATGCACAGCAAGCAGGAGTGCAGCATTATAATGATCTGAACACACCTGTCACTAAAAAGGAGGCTACGGTGATCAGCGACATTGTAGAGAGGGCAGTAAAAGCTGTGCTGCCCGGGGCAATTATTATACTCACAGGAGGATTCAGAAGgggTAAGGAGGTGGGCCATGATGTGGATTTCCTCATCACACACCCAGAGGAGGGGGCAGAAGAAAGATTGATGCCCAAAATTGTGAATTGGTTGGACGAGCAGGGTTTGCTGTTGTACCAGAAAACAACTAGGAATTCTTACCTAGAGAGTAAAGAAGGACCTGCTCGTCCTCCTAGTAACATGGACCGATTTGAGAGATGCTTCTCTATATTCAAGCTTGAACAAACTAAAGTGAACAGTGATACACAGGTCGAAGCTTCTTCATATAACTCGAGCACGACAGATAGAACAGAGGAATATCATTCAGGATCCACATGGAGAGCTGTTCGAGTCGATCTTGTAGTCAGTCCTTACAGTCAGTTTGCTTTTGCTACACTTGGCTGGACAGGATCCAAGCTCTTTGAGAGGGAGCTGAGGCGCTGGGCAGGACAGGAGAAGGGAATGTCCTTAAGCAGTCATGCACTCTACGACAGCAAACAAcaGCGTTATCTTCAAGCAAACTCCGAAGAGGAAATTTTCACTCATTTGGGCCTGGAGTACATTCCACCTTCGGAGAGGAACGCGTGATGCACTTCAGTCCAGCCCGGTTTACTCACTACCTCAGCTGATTGATCATTTTGTCAGAATCGGACAACTTGCCTTATCACCATGTTAATTTAAATGATGCATCCTTCATCCTTCAgtccattctgtgtaaaaaaaaaaaaatttgaggaattattattgttgttgttattacaTTCCTCAAATTTCCACATCAAATGCAGTAATGTTATCATTTACCTGCaaattctgcttttattagTGAATCgactttctttaattttatagGATTATATGATTAACTAAGAATTCAATTTTTATGAATGTTACATGCTCTGTGACAAACTATGAATCAATCTCTCTGAATGAATCATCCAGAAAGACAAAAACTgacatgtatatatttattttttgttatcttctataTCGTTATGTAGCTg

Function

symbol description
polm Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in pleuroperitoneal region and thymus. Orthologous to human POLM (DNA polymerase mu).

NR:

description
DNA-directed DNA/RNA polymerase mu-like

GO:

id name namespace
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03513 POLM; DNA polymerase mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943637.2 True 2184 mRNA 0.43 11 6030980 6038104

Neighbor

gene id symbol gene type direction distance location
mrps24 mrps24 coding upstream 15143 6011991 ~ 6015837 (+)
pargl NA coding upstream 119951 5903105 ~ 5911029 (+)
LOC113544817 LOC108276712 coding upstream 188430 5836657 ~ 5842550 (+)
ccar2 LOC108276708 coding upstream 195455 5828124 ~ 5835525 (+)
ykt6 ykt6,LOC108441080,LOC107704135,LOC107665783,LOC107733284,LOC107751647,LOC107602234 coding upstream 224483 5797141 ~ 5806497 (+)
ved LOC108276657 coding downstream 7136 6045240 ~ 6047205 (+)
LOC113544829 LOC108276728,LOC108410544 coding downstream 21730 6059834 ~ 6080426 (+)
ccdc62 ccdc62 coding downstream 52668 6090772 ~ 6098940 (+)
LOC113544842 LOC108276719,LOC108410541,LOC107722326 coding downstream 60965 6099069 ~ 6115392 (+)
rilpl1 rilpl1,LOC108410543,LOC106562515,LOC107655265,LOC107704174 coding downstream 78049 6116153 ~ 6129642 (+)
G264056 NA non-coding upstream 104674 5922310 ~ 5926306 (+)
G264009 LOC108277354 non-coding upstream 304035 5667582 ~ 5726945 (+)
G264002 NA non-coding upstream 326149 5702843 ~ 5704831 (+)
G263993 NA non-coding upstream 457700 5572964 ~ 5573280 (+)
G263953 NA non-coding upstream 825561 5204995 ~ 5205419 (+)
G264424 NA non-coding downstream 136210 6174314 ~ 6174692 (+)
G264426 NA non-coding downstream 156824 6194928 ~ 6195142 (+)
G264427 NA non-coding downstream 169886 6207990 ~ 6209011 (+)
G264428 NA non-coding downstream 180405 6218509 ~ 6283930 (+)
G264475 NA non-coding downstream 343562 6381666 ~ 6452851 (+)
G264336 NA other upstream 19078 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 950337 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 2454843 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 2889227 3116169 ~ 3141753 (+)
pcp4a NA other upstream 3213717 2795491 ~ 2817263 (+)
LOC113544903 mphosph9 other downstream 131789 6169893 ~ 6194681 (+)
G264948 NA other downstream 1028767 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 1077947 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 2137410 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 2291601 8329705 ~ 8353841 (+)

Expression


Co-expression Network