Item | Value |
---|---|
gene id | LOC113544721 |
gene name | pde4d,LOC108276982,LOC108425192,LOC107704165,LOC107709115,LOC107653658,LOC108443004,LOC102789696 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047611.1 |
NCBI id | CM018557.1 |
chromosome length | 24879021 |
location | 6469950 ~ 6651852 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
pde4d | Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to be active in cytosol; nucleus; and perinuclear region of cytoplasm. Is expressed in brain; female organism; and head. Human ortholog(s) of this gene implicated in acrodysostosis. Orthologous to human PDE4D (phosphodiesterase 4D). |
id | name | namespace |
---|---|---|
GO:0008152 | metabolic process | biological_process |
GO:0007165 | signal transduction | biological_process |
GO:0046872 | metal ion binding | molecular_function |
GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | molecular_function |
id | description |
---|---|
K13293 | PDE4; cAMP-specific phosphodiesterase 4 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026943641.2 | False | 5446 | mRNA | 0.45 | 16 | 6557094 | 6651852 |
XM_026943642.2 | False | 5368 | mRNA | 0.44 | 18 | 6475651 | 6651852 |
XM_026943643.2 | False | 5383 | mRNA | 0.45 | 15 | 6557094 | 6651852 |
XM_026943644.2 | False | 5047 | mRNA | 0.45 | 16 | 6512621 | 6651852 |
XM_026943645.2 | True | 6072 | mRNA | 0.44 | 16 | 6589886 | 6651852 |
XM_026943646.2 | False | 5336 | mRNA | 0.45 | 16 | 6616207 | 6651852 |
XM_026943648.2 | False | 4942 | mRNA | 0.44 | 15 | 6616538 | 6651852 |
XM_034312421.1 | False | 5471 | mRNA | 0.44 | 18 | 6469950 | 6651852 |
XM_034312422.1 | False | 5606 | mRNA | 0.44 | 18 | 6470571 | 6651852 |
XM_034312423.1 | False | 5323 | mRNA | 0.44 | 19 | 6475757 | 6651852 |
XM_034312424.1 | False | 5305 | mRNA | 0.44 | 17 | 6475651 | 6651852 |
XM_034312425.1 | False | 5260 | mRNA | 0.45 | 16 | 6612185 | 6651852 |
XM_034312427.1 | False | 4959 | mRNA | 0.44 | 14 | 6625604 | 6651852 |
XM_034312428.1 | False | 2572 | mRNA | 0.51 | 16 | 6557093 | 6649072 |
XM_034312429.1 | False | 2462 | mRNA | 0.51 | 16 | 6616206 | 6649072 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
depdc1b | depdc1b,LOC107654254,LOC107704111,LOC107709206,LOC107602227 | coding | upstream | 10988 | 6447459 ~ 6458962 (+) |
elovl7b | LOC108277391,LOC108425137,LOC107588931,LOC107706775,LOC107704168,LOC106571348 | coding | upstream | 22760 | 6444254 ~ 6447190 (+) |
LOC113544768 | pitpnm2,LOC107554528,LOC107722332,LOC107654556 | coding | upstream | 216919 | 6197279 ~ 6253031 (+) |
LOC113544858 | cdk2ap1,LOC108425184,LOC105026112,LOC103046776,LOC102226456,LOC107722329 | coding | upstream | 300986 | 6165896 ~ 6168964 (+) |
sbno1 | sbno1 | coding | upstream | 304998 | 6148993 ~ 6164952 (+) |
LOC113544738 | LOC108277217,LOC108425195 | coding | downstream | 35615 | 6687467 ~ 6695669 (+) |
plk2a | LOC108277216,LOC108425197,LOC107653495,LOC107602251,LOC107709193,LOC107588929,LOC107706772 | coding | downstream | 45822 | 6697674 ~ 6701821 (+) |
tmed2 | tmed2,LOC108425203 | coding | downstream | 456655 | 7108507 ~ 7113994 (+) |
naa25 | naa25 | coding | downstream | 475899 | 7127751 ~ 7152305 (+) |
tor4aa | tor4a | coding | downstream | 517396 | 7169248 ~ 7174553 (+) |
G264475 | NA | non-coding | upstream | 17099 | 6381666 ~ 6452851 (+) |
LOC117599393 | NA | non-coding | upstream | 28073 | 6439897 ~ 6441877 (+) |
G264428 | NA | non-coding | upstream | 186020 | 6218509 ~ 6283930 (+) |
G264427 | NA | non-coding | upstream | 260939 | 6207990 ~ 6209011 (+) |
G264426 | NA | non-coding | upstream | 274808 | 6194928 ~ 6195142 (+) |
G264835 | NA | non-coding | downstream | 49985 | 6701837 ~ 6702362 (+) |
G264903 | NA | non-coding | downstream | 280026 | 6931878 ~ 6947742 (+) |
G264894 | NA | non-coding | downstream | 310733 | 6962585 ~ 6962918 (+) |
G264933 | NA | non-coding | downstream | 399205 | 7051057 ~ 7051362 (+) |
G264934 | NA | non-coding | downstream | 399652 | 7051504 ~ 7051940 (+) |
LOC113544903 | mphosph9 | other | upstream | 275269 | 6169893 ~ 6194681 (+) |
G264336 | NA | other | upstream | 458048 | 6008800 ~ 6011902 (+) |
triap1 | triap1,LOC106568193 | other | upstream | 1389307 | 5077853 ~ 5080643 (+) |
msi2a | msi2b,LOC108276910,LOC108435815,LOC108425902 | other | upstream | 2893813 | 3253316 ~ 3576137 (+) |
nrip1b | LOC108277259 | other | upstream | 3328197 | 3116169 ~ 3141753 (+) |
G264948 | NA | other | downstream | 415019 | 7066871 ~ 7082441 (+) |
ddx55 | ddx55,LOC107704124,LOC107665764 | other | downstream | 464199 | 7116051 ~ 7126246 (+) |
tmem167a | tmem167a,LOC107658615,LOC107588977 | other | downstream | 1523662 | 8175514 ~ 8187611 (+) |
LOC113544929 | NA | other | downstream | 1677853 | 8329705 ~ 8353841 (+) |
G265696 | NA | other | downstream | 1981783 | 8633635 ~ 8639728 (+) |