Gene
RNA
| Item | Value |
|---|---|
| gene id | apc |
| gene name | apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007,LOC107653779 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 5171351 ~ 5204423 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| apc | Predicted to enable beta-catenin binding activity; microtubule binding activity; and protein kinase regulator activity. Involved in somitogenesis. Acts upstream of or within several processes, including animal organ development; chordate embryonic development; and embryonic pectoral fin morphogenesis. Predicted to be located in several cellular components, including centrosome; kinetochore; and lateral plasma membrane. Predicted to be part of beta-catenin destruction complex. Is expressed in hypochord; nervous system; neural tube; and trigeminal placode. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); endometrial cancer (multiple); familial adenomatous polyposis 1; hereditary desmoid disease; and medulloblastoma. Orthologous to human APC (APC regulator of WNT signaling pathway). |
| description |
|---|
| PREDICTED: adenomatous polyposis coli protein isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0090244 | Wnt signaling pathway involved in somitogenesis | biological_process |
| GO:0061380 | superior colliculus development | biological_process |
| GO:0001754 | eye photoreceptor cell differentiation | biological_process |
| GO:0055001 | muscle cell development | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0003146 | heart jogging | biological_process |
| GO:0071599 | otic vesicle development | biological_process |
| GO:0003157 | endocardium development | biological_process |
| GO:0031017 | exocrine pancreas development | biological_process |
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:0001501 | skeletal system development | biological_process |
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0003170 | heart valve development | biological_process |
| GO:0043065 | positive regulation of apoptotic process | biological_process |
| GO:0090090 | negative regulation of canonical Wnt signaling pathway | biological_process |
| GO:0007026 | negative regulation of microtubule depolymerization | biological_process |
| GO:1900052 | regulation of retinoic acid biosynthetic process | biological_process |
| GO:0045859 | regulation of protein kinase activity | biological_process |
| GO:0007050 | cell cycle arrest | biological_process |
| GO:0070365 | hepatocyte differentiation | biological_process |
| GO:0007051 | spindle organization | biological_process |
| GO:0035118 | embryonic pectoral fin morphogenesis | biological_process |
| GO:0008285 | negative regulation of cell population proliferation | biological_process |
| GO:0061031 | endodermal digestive tract morphogenesis | biological_process |
| GO:0048920 | posterior lateral line neuromast primordium migration | biological_process |
| GO:0044030 | regulation of DNA methylation | biological_process |
| GO:0048384 | retinoic acid receptor signaling pathway | biological_process |
| GO:0022006 | zona limitans intrathalamica formation | biological_process |
| GO:0003306 | Wnt signaling pathway involved in heart development | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0030917 | midbrain-hindbrain boundary development | biological_process |
| GO:0000281 | mitotic cytokinesis | biological_process |
| GO:0000776 | kinetochore | cellular_component |
| GO:0030426 | growth cone | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0030877 | beta-catenin destruction complex | cellular_component |
| GO:0016328 | lateral plasma membrane | cellular_component |
| GO:0019887 | protein kinase regulator activity | molecular_function |
| GO:0008013 | beta-catenin binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| K02085 | APC; adenomatosis polyposis coli protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026943657.2 | True | 9791 | mRNA | 0.45 | 15 | 5171351 | 5204423 |
| XM_026943658.2 | False | 9688 | mRNA | 0.45 | 16 | 5171352 | 5204423 |
| XM_026943659.2 | False | 8804 | mRNA | 0.45 | 8 | 5194314 | 5204423 |
| XM_034312376.1 | False | 9598 | mRNA | 0.45 | 15 | 5177830 | 5204423 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gal3st1b | LOC108277024 | coding | upstream | 69842 | 5089676 ~ 5101509 (+) |
| sgsm1b | sgsm1b,LOC108276524,LOC108435151 | coding | upstream | 96570 | 5058675 ~ 5074781 (+) |
| LOC113544783 | LOC108277320 | coding | upstream | 154905 | 4994706 ~ 5016446 (+) |
| rfx3 | rfx3,LOC107710408 | coding | upstream | 288078 | 4865568 ~ 4883273 (+) |
| glis3 | LOC108277006 | coding | upstream | 307214 | 4842081 ~ 4864137 (+) |
| LOC113544876 | LOC108277390 | coding | downstream | 1494 | 5205917 ~ 5208655 (+) |
| cntnap3 | LOC108276565,LOC108410547 | coding | downstream | 186261 | 5390684 ~ 5517746 (+) |
| zmp:0000001301 | LOC108277205,LOC108441065 | coding | downstream | 405759 | 5610182 ~ 5626256 (+) |
| LOC113544883 | spin1,LOC107740044,LOC107568611,LOC107549006 | coding | downstream | 423007 | 5627430 ~ 5639581 (+) |
| nxnl2 | nxnl2,LOC107687376 | coding | downstream | 441448 | 5645871 ~ 5649454 (+) |
| G263801 | NA | non-coding | upstream | 145843 | 5023275 ~ 5025508 (+) |
| G263716 | NA | non-coding | upstream | 284550 | 4885346 ~ 4886801 (+) |
| G263715 | NA | non-coding | upstream | 286624 | 4883327 ~ 4884727 (+) |
| G263724 | NA | non-coding | upstream | 294846 | 4876245 ~ 4876505 (+) |
| G263634 | NA | non-coding | upstream | 395642 | 4721546 ~ 4775709 (+) |
| G263953 | NA | non-coding | downstream | 572 | 5204995 ~ 5205419 (+) |
| G263993 | NA | non-coding | downstream | 368541 | 5572964 ~ 5573280 (+) |
| G264009 | LOC108277354 | non-coding | downstream | 463159 | 5667582 ~ 5726945 (+) |
| G264002 | NA | non-coding | downstream | 498420 | 5702843 ~ 5704831 (+) |
| G264056 | NA | non-coding | downstream | 717887 | 5922310 ~ 5926306 (+) |
| triap1 | triap1,LOC106568193 | other | upstream | 90708 | 5077853 ~ 5080643 (+) |
| msi2a | msi2b,LOC108276910,LOC108435815,LOC108425902 | other | upstream | 1595214 | 3253316 ~ 3576137 (+) |
| nrip1b | LOC108277259 | other | upstream | 2029598 | 3116169 ~ 3141753 (+) |
| pcp4a | NA | other | upstream | 2354088 | 2795491 ~ 2817263 (+) |
| rps25 | rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 | other | upstream | 2424034 | 2744396 ~ 2747317 (+) |
| G264336 | NA | other | downstream | 804377 | 6008800 ~ 6011902 (+) |
| LOC113544903 | mphosph9 | other | downstream | 965470 | 6169893 ~ 6194681 (+) |
| G264948 | NA | other | downstream | 1862448 | 7066871 ~ 7082441 (+) |
| ddx55 | ddx55,LOC107704124,LOC107665764 | other | downstream | 1911628 | 7116051 ~ 7126246 (+) |
| tmem167a | tmem167a,LOC107658615,LOC107588977 | other | downstream | 2971091 | 8175514 ~ 8187611 (+) |
