LOC113544738 (LOC108277217,LOC108425195)


Basic Information

Item Value
gene id LOC113544738
gene name LOC108277217,LOC108425195
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6687467 ~ 6695669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943672.2
CTCCATTATATTACCGAATCAGCGTGGTTTATTCATAAATCTCGTAAACAACTTCGGGGGCGTATTGTACGTCATCATCTCAGCTTTAATGACACAGGCTCGGGCGAAACAGTACAATCATACTGGAGCCATAGAAATATTCCGCTATAGCACTGACATGGTTACTTTGATAGAACAGTAGGTCGAGGACGCGAGCGTGtgaattcttcttttttattggTTCTGCGAGCTGTCAATCTTGTGCAACCTGCAAACAAGCTGAAAAGCAGCGCGCGCGCTAGACAGTCAGCACTTGTGTCGCGTTATAGCAGTGTGCTAGTTAAGGTAGGCGGAATCCAGTGAGGAGGCTGTGGGGAAGTAGACTGTGGGGAAGTAGACTGTGGTGGAGAGCCAAATCAAATTTTAATCCCTAACACGCTAAATGTCGTGTTTACAGACTGTTTCTCTTCGCTTTAATCCTGTCCATCTCACAGGTCGCCTCTATATGaagaagccagtttaacaaCAGCCTGTACTCTGGCACAGTCCTTTAGAAACTGGAGTCAGTATGGAGGACTCTATCGAGGTCATGCTCCAGGAACGGAACTCTAAATTACTCTATCGTTATCGGGACAACCGAGTCCTTACCTTTGCGGCAGGAGCCATCTTCTCTGGACTCTATGGCCTCTGGGCCATGTTCTGCCTGCCTGGGTTGAAAGTGCCATTTCGGCTAAAGGTGCCATTCTTGCCATCCTCCAAAGATCAGACTGAGAATGTGATGAAGTTGCTTGAAGGGAGACGAGGTCGGTTGGCTGATCTGGGCTCGGGAGATGGACGACTGGTGTTTGCAGCATGCTCTGCAGGATTTCAGTGCACAGGCTTTGAGATCAACTCCATGCTGTTAGCCTACTCTCGAAGCCAAGCATGGTGGAGGGGGATACCACACACTCATGCCACATTTGTTAAGCAGGATTTCTGGAAGACTGACCTGTCAAAATACACAAACGTGGTTGCGTTCCTGGCCCCTGGTGTGATGGCCGATCTGGAGGAGAAACTCCTGAAGGAGCTTCCTGATGATGCCCGGGTCGTGGTGTGTCGCTTCCCATTTCCACACTGGCCCCACAGCTGCACTAGTGGCTCTGGACTGGACCAAGTCTGGGCTTATAATGTCTCCAGTGTGCGAGAGACAAGAGACACGACTTTTTGAAAACACATCCCTGAGCCAGCTGACTGATTTAAAGGTTCTTCTGAGATGTGTTTGTTCAGTAATGTTGTGTTCATAACGAAGCTCATAACAAACAGTGTGCCTCTTGTTATGATCATGTGATTTTCTTGgtcataaacattttttttattagatcaCCTTCATCTCCCGCTAGCCATAAAAAGGATTTCATTCTTTagcattaaaggaataaaatgatAAGATAAGAAGGCAGAGCTTTCATTCTCTTGAGCCAGGGTTTAGACAAAAGCTCAGCTGACATCATCTCAGTGACTTGATATGATTGCAAGAGTCATTAACtgacataaacacactcatccaATGACTCATGATATATAACATGATATATAATGATTGACTcataaagaaaacacactcacagacataTAATTTTCCCACTGCTTATTTGAGAACAAccgtgcattttttttttaggttccAGTTTGAGCCCAGCAGTGGTTTTGACAGTCCTAGGATTCTAACCTTTGTGGTCACTAACACAAAATCATGTTACAATCACGTGTTATAACTGTGATTCCTCCATCCAATAGTTTACCTATTTACAGTCTGCTGAAGAAGCTTCAGAGGTGTTTATAATAGCTAATTAAGCCTCACTGATTACAACAGCAGATAAAAATagagacagaaaataaagcaaCACATGGTGGTGTGCTATTTTTAATTCGTTAAAATGTTGCTGTTGTGATTTTAATGACAGTTAAGCTCAAAGCTAAGTGTTTCACTCGCATGAAAAACAATGCCTTGTGAAAGTCTGGAATGAATAATGTGAATCAACTACAGCAAAATGTTTGTCAGTGTAACTGACAGTAGTTAAGTGCTTAAAGAAAAGGGAATTTTATCTTCATTTCTAAAAGATGATGTAAGTAATTACCCTTTAGTGCACAAAGTAGGGTCATGTAAAAATTGCCTTGTGTTTGACATTCAAGCTTAAGGTAGTGCCATACTTGACTAAGAAATGATGACTGAAAAGGAGTTTTTACAATAATAGGGTAGTTCCTTATTGTATTATAgaacataatttattattatctgataaataaatcagtactaTGGTCTACATTGCTAGTGTGGTCTGTATCAATCTGATCTGATAATATTACATTGATTTCAAATGTGTCTTATCGTTATCTGCAGTAGAGCAGTATGCAGTGTTTGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943672.2 True 2383 mRNA 0.42 5 6687467 6695669

Neighbor

gene id symbol gene type direction distance location
LOC113544721 pde4d,LOC108276982,LOC108425192,LOC107704165,LOC107709115,LOC107653658,LOC108443004,LOC102789696 coding upstream 35615 6469950 ~ 6651852 (+)
depdc1b depdc1b,LOC107654254,LOC107704111,LOC107709206,LOC107602227 coding upstream 228505 6447459 ~ 6458962 (+)
elovl7b LOC108277391,LOC108425137,LOC107588931,LOC107706775,LOC107704168,LOC106571348 coding upstream 240277 6444254 ~ 6447190 (+)
LOC113544768 pitpnm2,LOC107554528,LOC107722332,LOC107654556 coding upstream 434436 6197279 ~ 6253031 (+)
LOC113544858 cdk2ap1,LOC108425184,LOC105026112,LOC103046776,LOC102226456,LOC107722329 coding upstream 518503 6165896 ~ 6168964 (+)
plk2a LOC108277216,LOC108425197,LOC107653495,LOC107602251,LOC107709193,LOC107588929,LOC107706772 coding downstream 2005 6697674 ~ 6701821 (+)
tmed2 tmed2,LOC108425203 coding downstream 412838 7108507 ~ 7113994 (+)
naa25 naa25 coding downstream 432082 7127751 ~ 7152305 (+)
tor4aa tor4a coding downstream 473579 7169248 ~ 7174553 (+)
slc25a1b slc25a1,slc25a1b,LOC108425209,LOC107704153,LOC107706761 coding downstream 487279 7182948 ~ 7197818 (+)
G264475 NA non-coding upstream 234616 6381666 ~ 6452851 (+)
LOC117599393 NA non-coding upstream 245590 6439897 ~ 6441877 (+)
G264428 NA non-coding upstream 403537 6218509 ~ 6283930 (+)
G264427 NA non-coding upstream 478456 6207990 ~ 6209011 (+)
G264426 NA non-coding upstream 492325 6194928 ~ 6195142 (+)
G264835 NA non-coding downstream 6168 6701837 ~ 6702362 (+)
G264903 NA non-coding downstream 236209 6931878 ~ 6947742 (+)
G264894 NA non-coding downstream 266916 6962585 ~ 6962918 (+)
G264933 NA non-coding downstream 355388 7051057 ~ 7051362 (+)
G264934 NA non-coding downstream 355835 7051504 ~ 7051940 (+)
LOC113544903 mphosph9 other upstream 492786 6169893 ~ 6194681 (+)
G264336 NA other upstream 675565 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 1606824 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 3111330 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 3545714 3116169 ~ 3141753 (+)
G264948 NA other downstream 371202 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 420382 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 1479845 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 1634036 8329705 ~ 8353841 (+)
G265696 NA other downstream 1937966 8633635 ~ 8639728 (+)

Expression


Co-expression Network