depdc1b (depdc1b,LOC107654254,LOC107704111,LOC107709206,LOC107602227)


Basic Information

Item Value
gene id depdc1b
gene name depdc1b,LOC107654254,LOC107704111,LOC107709206,LOC107602227
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6447459 ~ 6458962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943680.2
TTGTCCAATCACGTTGCCCGAAGCAGTGTGTCCAGTTTCAAATCCAAGCGTCTCCttgtttttataacaatttattAGGAAGTAAATGCGAGGATGTTTGACGGACACGAAACCGATGTTTAATTTAGTATAGTTTAATTAGTTTAGGTTATTAGTTAGAATAGGATTAAAAAATGGATGGGAATATGATCGGCCCCGGTCCGTACAGGGCAACAAAGTTGtggaatgaAACCATCAAGCTTTTCCGTGGAGGGATGCCACTGAAAAGACACTGGGCTCATTTTCGGAGTTACGATAACAGCTTCACCGGCTCAGAGGCTGTTGATTATCTTCACGAACTGCTGAAGCGTAACCAAAATTTTGGGCCTGAGGTGACCCGCTATCAGTCTCTACAGCTGCTGAGGAAGTTCCTTAAGAACCATGTGATTGAAGATGTTAAGGGACGCTTTGGTAGAGAAGACTTTGACGACAACGGACGTTTATATAGaTTTCCTCCACAGTCACCCCTCAAACCTGTTCCTAAGCGTATGCCTTTGGCACAGAGAGACTTTGCTCCACAGACACTACGATGGGATAACTGTGACGACACACAGGTGCCCTCAACGATACCCATGAAGCCGCTTGTTTTGAATTCTGAGACATGGAACAAGAGGCACAGTATTGCCATAGGGGAAGTTCCTGAGTGCAAGCTGATTCGGAGGAGAGACGTCACGCCAAAGCATGTGGACCAGATATGGAAGTCAATGACTCTGAACCGTTTACAGAACGTTTTGGGGCTCCAGTCTTTAGACGGTGTTCTCGATGCCAAGCTCTTGAGCTCCAAGCACATTGTCTACAACGTATTTAGTGTCAACAAACAGGGCATCGTTGTTCTGAAGAACAAAGCAGAGGACCTTCCTCACTGGGTTTTATCTGCAATGAAATGCTTGGCAAattGGCCCAATGGAAATGAGAGTAATCAGCCCATGTATCACGGCTTCGAGCGAGATGTTTTCCGAACAGTAGCTGAACACTTCCAGAGATTAAAGGAGCCACTGCTGACATTCCAGCTATATGAAATTTTTGTCAGCATTCTGGGACTCCTTCCACGACAGCAGGTTGCGGTTGAGGCGCTGCAGGTCTGCTGCCTCCTCCTGCCTCCAGCCAACCGGCGAAAACTGCAGCTGTTAATGCGCCTGATGACTAAAGCCTGCAACAATCATCATCTCCCTCCACTTAACGATGCCATAGGAACACGCATCCTGATGGTCCAGACTTTCTCCCGCTGCATTTTATGTTCATCAGATGAAGTGGACCTGGATGAGCTGCTGGCCACCAAACTCGTCAACTTCATGATGGACAACCATGAGAACGTGCTGAAGGTCCCTGCCGAGCTACAGAGATCTGTGCAGGAGCATCTATCCCACCTGCGCAGAGCTCAGATAAAGTACGCAGGTGCAGACACAGACTCCACGCTGGAATCGCCACCTCACACTTTCTGCAGGCAAATCAGCAAGGAGGAGTTTGAGGAGCAGAGAGTCACGGGCTCCCAGGGAGCGATAGTGGAGCTGCTAGAAGGGATCATTCATGACAAGGCCATGTCTAtaaaggacaagaagaagaaactgAAACAGTTCCAGAGATCTTATCCTGACATCTACCGCAGACGCTTCCCTACACCTGAGAGCGAAGCTGCAGTTTTTCCAGAGAGGCCTCAGAAGCTCAAACCCCAGCTGACATTCTTCACCCTAAAAAAGAAGTCTTTGCAGCCTTTCCAGAGGAGCTGGAGCTTCCGTGCTTGAACCAAAAATCACAAAGCTGCCAAgtactgtaaaaaaagaaaactgtctACAGACCCACAGTTATCAGCCTGTAGCTTCTGG

Function

symbol description
depdc1b Predicted to act upstream of or within intracellular signal transduction. Is expressed in blastoderm; blastodisc; head; and trunk. Orthologous to human DEPDC1B (DEP domain containing 1B).

NR:

description
DEP domain-containing protein 1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943680.2 True 1862 mRNA 0.48 11 6447459 6458962

Neighbor

gene id symbol gene type direction distance location
elovl7b LOC108277391,LOC108425137,LOC107588931,LOC107706775,LOC107704168,LOC106571348 coding upstream 269 6444254 ~ 6447190 (+)
LOC113544768 pitpnm2,LOC107554528,LOC107722332,LOC107654556 coding upstream 194428 6197279 ~ 6253031 (+)
LOC113544858 cdk2ap1,LOC108425184,LOC105026112,LOC103046776,LOC102226456,LOC107722329 coding upstream 278495 6165896 ~ 6168964 (+)
sbno1 sbno1 coding upstream 282507 6148993 ~ 6164952 (+)
rilpl1 rilpl1,LOC108410543,LOC106562515,LOC107655265,LOC107704174 coding upstream 317817 6116153 ~ 6129642 (+)
LOC113544721 pde4d,LOC108276982,LOC108425192,LOC107704165,LOC107709115,LOC107653658,LOC108443004,LOC102789696 coding downstream 10988 6469950 ~ 6651852 (+)
LOC113544738 LOC108277217,LOC108425195 coding downstream 228505 6687467 ~ 6695669 (+)
plk2a LOC108277216,LOC108425197,LOC107653495,LOC107602251,LOC107709193,LOC107588929,LOC107706772 coding downstream 238712 6697674 ~ 6701821 (+)
tmed2 tmed2,LOC108425203 coding downstream 649545 7108507 ~ 7113994 (+)
naa25 naa25 coding downstream 668789 7127751 ~ 7152305 (+)
LOC117599393 NA non-coding upstream 5582 6439897 ~ 6441877 (+)
G264428 NA non-coding upstream 163529 6218509 ~ 6283930 (+)
G264427 NA non-coding upstream 238448 6207990 ~ 6209011 (+)
G264426 NA non-coding upstream 252317 6194928 ~ 6195142 (+)
G264424 NA non-coding upstream 272767 6174314 ~ 6174692 (+)
G264835 NA non-coding downstream 242875 6701837 ~ 6702362 (+)
G264903 NA non-coding downstream 472916 6931878 ~ 6947742 (+)
G264894 NA non-coding downstream 503623 6962585 ~ 6962918 (+)
G264933 NA non-coding downstream 592095 7051057 ~ 7051362 (+)
G264934 NA non-coding downstream 592542 7051504 ~ 7051940 (+)
LOC113544903 mphosph9 other upstream 252778 6169893 ~ 6194681 (+)
G264336 NA other upstream 435557 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 1366816 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 2871322 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 3305706 3116169 ~ 3141753 (+)
G264948 NA other downstream 607909 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 657089 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 1716552 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 1870743 8329705 ~ 8353841 (+)
G265696 NA other downstream 2174673 8633635 ~ 8639728 (+)

Expression


Co-expression Network