gal3st1b (LOC108277024)


Basic Information

Item Value
gene id gal3st1b
gene name LOC108277024
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5089676 ~ 5101509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943686.2
ccctttCTCACAGAGCCAGAGAGGTGGAAAGTCAGAGGCAGACAGAACAGGTTCTTTGAACTGGGTCCGAGACTGTAAGCCTGGCATAAAGATGTTGGAATGTCCCATGTTCTGAAACAATTTTTCAGGACAGAGTCGTTCCTGACTCTCCTGACTCTAAGTCAGGAATTACTTAAATAAGGCTAGGGAATCAAATCTGGAGGGCGTGTAGAAAATGGACCATCATCTACCCAGGTCAGGTGCACACAAGCTTATGCTGGGGTTCCTGTTCACCTGCATCACGATGATGTTGTACTGTTTTTCAACGCCAACATTCCAAGCCAACACACCAAGATTTTCAGTGCCAGCTCCATGTGCAAATAAAACCCCACCATGGCAAAAGAAGAATGACTTTTTCTCTACAACTGAGGTGGAGCACTGTGTGCCAAAAGTGAACCTGATGTTCTTGAAGACCCACAAAGCAGCAAGCAGCACTATTCTAAATATTCTCCTGCGCTTTGGGGAGAAGAACGGACTGAAATTCGCTCTCCCCAATGGTCGCAATGATTTCTCCTATCCAGCTACATTCACACGCATGCATGTGAAGGATTACAGGCCAGGTGCATGCTTCAATATCATCTGCAACCACATGCGTTTCAATGCTCCTGAGGTCGAAGCGCTTCTACCGGGTGATGCATTCTTCTTCACCATCCTCAGAGACCCTGCTCTGGTCTTTGAGTCCTCGTTCCATTACTACAACAGAGTCGTGCCCTTGACATGGAGGATCCATGGTGAGGATAAACTAACAGGTTttctgaatgatccacagctccACTTTAACTCAGAAGGCTTCAACTCCTTTTATCTGAAGAACCTTATTTTTTTCGACCTCGGCTTTGACAACACATTGGAGCCAGAGGATCCGATAGTGGACAGCGCCATTCGTGCCATTGCGGAGCGCTTCCAGCTCGTCCTGATTGCTGAACATTTCGAGGAGTCACTCATTCTGCTCAAGGATGCTCTCTGCTGGCAGATGGATGACTTGCTGTTCTTCAATATGAACACACGCAGGCCTACAAGTGTGTCCCAGCTCACGCCCGAGCTGAGGGCCAAAGCGCGTGAGTGGAACGGAGTTGACTGGAAGCTCTACCGTTACTTCAATGCCACGCTCTGGGCCAAAGTAGACGCCTACGGGAGGAAGCGCATGGAGAAGGAGGTGAAAGAGTTGCGCCAGAGGAACAGCGAGATGGCAGCCATCTGCATTAGCGGTGGGATGGCTGTGGAGGCTCAGGACATAAGGGACCAAAGCATGAGGCCCTGGCAGCCTGTTGGAGAGAGCTCTATTTTGGGATACAACATGAGGAGCAACATTGAGCAGCGGTACAGGGAGCTCTGCCGAAAGATGCTAACGCCCGAAATTCAGTACTTAACAGACCTGGGAGTCAATCTGTGGATGACCAGATTATGGGGCTGGTTCAAAGCTATTTTAACACTatgatttaaagaaataatgcCATTCTATGTCTGACCTCATCATTCTGAAAAGAACTAcactatttgttttattttataaaataaaatatagtgaaCACATTTCATGACATAACTATGACACATTTCATGACGTAACTGTGCCATGCAGTAAATTagcatgtttaataattattgtgtgtgtaataaaatataaaatgtttagatATAACCTAATATGAAATTCACTATAATCATTCATGATATTGTTTTAGAGATAATCAAGAGAAGGCAAAAAGCATCTGATCCACGCAAGGTccataacatttttttccccctcctcttTGATTGCTGATGACTTTGCCACCTTCTCTGCTAAGAAGGTGGCAAAGGTCTCATTTGCCAAAATCTGTCAGTTTCCCCCCCTCCTGCCCTTATTCCTACACTGCACAATCTGTTTTCACAATCTGTTTTCCCCTCCTTTCTCCTTAACACAGTTTTCTCCCCTTTCTACAGAAGCTTCTCTTCTCCATCAATCCTACCATTTGCCTGCTAGATCTCATCCTTTCCACAATTTGATCTGGCAACATCTCCTCTCCTTCATCACTAACATTATAATCATCGGGTCATGTATCGACTACCTTCAAGACAGCAAGGGTTAAACTGATTCTGAAAAAGCCCACACTGGACATCTCAGACATCACCGACTGACCGGTATCACgtctctcctttcttttttaaattcttgaATGTGCCGTATACTCTCAGTGGTCTATGTTTCTTAGCCAGAAGAactccaagatcctaaccagtctgTCTTTAAAGCGGTATACTCCACTGAGAAGCTTCATGCCACTACATCAGCCAAACTATCATCAGTCCTCATTCTTCTTGACCTCTCAGCAGCCTTCAACATGGTCAATTACAAGACTCTCCTGTCCATCCAAGGGGAATAAGTCTAGAATCAGTTTCACAGGATAGCAGTGGTATGGCAGTGGCAGTGGGACATTCATATAGTGTTATGGAGAGAATacacatctgctccatgcatactctccactggtgttccccAATGCTCAGTTCTCTGCCCTCTTCTATTCtccctctatacccgctctatcagtgaggtcatatcctcatatggttttcataccactgctgtACTTTTGACACTCAACTCATTCTCTCCTTTTCCAAGTAGGATGTTGTTTAGCTTTTCCAAAGATTCAGACACAGCCCTGCTCAGATCACACCATCTGACAACACAGGCAACCTTGGGGTAGCTCTGTTCAACCATCTATATTTCTGTTCTCATGTTGCTAACCTTATTGTGTCATTCAGTTTCCAACATCAGAAGGATCTCCACAGAAGCCACTTAGGTGCTTGTTTAGAACCCTATTCTAGCTTTttccctagatgtccgaacagttGTGTTACTGTCTGCCTTCACACAAAGActgaagacctacctcttcaatAAGCACAAAAATTTGCACtaatttaaagaaataacaTCTTAACACCTGTACTGTTTTTGTTGCTATAAACTTGTTGTGCTAACTCCTCAGAGCCACTGGAGCAGagcacaaccttctgatcagcagCCCAGGGCCCTAGCCACTGGTGGTGGTTGCCTCTGTGGAGTTATgactaattaaagaaaacttGTTGCTTATAAACTTGTTATGCTAAATCCTCAGGGGCAGTTGTGCTTCATTGTTTAGGGTCCTGGGCTGCTGATTAAAAGGTTGCACTCTGCTCCAGTGGTGCTCGATTATGGCAGACCCTGTGCCCTAATCctagcttcctaacaagctgggatacatgaagaaaagaatttcactgcacCGTacttgtatgtgtatgtgtgacaataaaggctttcttttctttctttctgtttcctaAAACACTGTGAGACCCTTACCTATTTGTGCTGGATAAGGTTATCAA

Function

NR:

description
PREDICTED: galactosylceramide sulfotransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943686.2 True 3402 mRNA 0.44 4 5089676 5101509

Neighbor

gene id symbol gene type direction distance location
sgsm1b sgsm1b,LOC108276524,LOC108435151 coding upstream 14895 5058675 ~ 5074781 (+)
LOC113544783 LOC108277320 coding upstream 73230 4994706 ~ 5016446 (+)
rfx3 rfx3,LOC107710408 coding upstream 206403 4865568 ~ 4883273 (+)
glis3 LOC108277006 coding upstream 225539 4842081 ~ 4864137 (+)
bmpr1bb bmpr1b,LOC108435137 coding upstream 521313 4496472 ~ 4568363 (+)
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007,LOC107653779 coding downstream 69842 5171351 ~ 5204423 (+)
LOC113544876 LOC108277390 coding downstream 104408 5205917 ~ 5208655 (+)
cntnap3 LOC108276565,LOC108410547 coding downstream 289175 5390684 ~ 5517746 (+)
zmp:0000001301 LOC108277205,LOC108441065 coding downstream 508673 5610182 ~ 5626256 (+)
LOC113544883 spin1,LOC107740044,LOC107568611,LOC107549006 coding downstream 525921 5627430 ~ 5639581 (+)
G263801 NA non-coding upstream 64168 5023275 ~ 5025508 (+)
G263716 NA non-coding upstream 202875 4885346 ~ 4886801 (+)
G263715 NA non-coding upstream 204949 4883327 ~ 4884727 (+)
G263724 NA non-coding upstream 213171 4876245 ~ 4876505 (+)
G263634 NA non-coding upstream 313967 4721546 ~ 4775709 (+)
G263953 NA non-coding downstream 103486 5204995 ~ 5205419 (+)
G263993 NA non-coding downstream 471455 5572964 ~ 5573280 (+)
G264009 LOC108277354 non-coding downstream 566073 5667582 ~ 5726945 (+)
G264002 NA non-coding downstream 601334 5702843 ~ 5704831 (+)
G264056 NA non-coding downstream 820801 5922310 ~ 5926306 (+)
triap1 triap1,LOC106568193 other upstream 9033 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 1513539 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 1947923 3116169 ~ 3141753 (+)
pcp4a NA other upstream 2272413 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 2342359 2744396 ~ 2747317 (+)
G264336 NA other downstream 907291 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 1068384 6169893 ~ 6194681 (+)
G264948 NA other downstream 1965362 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 2014542 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 3074005 8175514 ~ 8187611 (+)

Expression


Co-expression Network