pdlim5b (LOC108277016,LOC108435134)


Basic Information

Item Value
gene id pdlim5b
gene name LOC108277016,LOC108435134
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4432696 ~ 4493792 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943713.2
gttgagaagGAAGAAGCGGAAGTCCAAATTGTCGCCTGGGTTCTGAAGCTCGTCTGAAGTGTCGACGGTTTCAGTTCCACGCGAGCGCGCGAGCGGAGGCGGTAGTGCTTTCTCCTGTTTGCAGGTTTTAAGTTTGCTGAAGTTTGGAAGTGCTTgatccttcacacacacatacacacaccctgacaaCCGGACCACCATGAGCAGCAATTACAGCGTGTCCCTGATCGGACCCTCGCCCTGGGGCTTCAGACTGCAGGGGGGCAAAGACTTCAGCATGCCTCTCACCATCTCCAGAttgACGGATGGAGGAAAAGCGGCCAAAGCGAAGATCAGCATAGGAGATATCGTGCTGTCCATCGACGGCATCGCCACAAACACCATGACTCACCTGGAGGCTCAGAACAAGATCAAAGCCTGCACAGGCAATTTGAGCCTCACCCTGCAGAGAGCGTCCAGCGTTCCCAAAGGCGATGTACCCAAGGATGAATCACCAGAGATCATTAAACCCGTGCCCATCAGCCACCCACCTGCTCCCGCCCCTAGTGCCAGCCCCACCAACCCTCCCCCAAGTAGCGCATACAACAAGACGGCCCGCCCATTCGGCGCATCTTCTAATTTTAGAGCAGTCAGCCCGACCTCCACTCCTGCAGCACCCAAAGCCTCCATCCCTTCTGCCTCCTCAGCTTTCACCCCCGCTGCTCCCTCCCAGCAACCTCCACCACAACCCGCACAAGGCCCACAACCTCCCTTCCCACTGGCCAGTAGCTCCGCCTCCCGCACAGTCTCCTCTCTTAACCCTGCCCACAAACCTGGCTCCGCTTACTCCCCCTTCTCtcactcctcttcctcctcatcctctggCTCGTCTTCGCCAGCCAGAGTGACAGGCCCTGCTCCCTCATCTGCTCCCACTGTGCCACAGCCTTCGGTCTATAACACGCCATTCAACCTGTACTCCAATGAGAACGCATGTGAGGTGGCTATGGGTCAGAGGCGTGGCCTACTGGAGCAACAAGGTGGAGTGGAGCATCAGAATGGAGTTCCCAGGAAGCCCATCCCAGATACGGAGCTGGTGGTGAACCACGGCTCTCACCTGAGCGACGCCAGTAAAAAGCGTCTGATCGAGGACACGGAGGACTGGCGCCCACGCACTGGAACCTCTCAGTCCCGCTCCTTCCGCATCCTGGCACAGATCACGGGTACAGAGAACGaACAAGCCCACGAGAGCAGTCCCGGAAAGAATGAGGCTGTAGAGGACGTCCATGCGAACACTCACGCCACGTCCATGGTTAAAACCATGACCAAAGTGCCACACACTGGGAATGGAGTCCCTCCACCTACCACTGTGACTACCAAGAGCTGGCAGTCTGGAAACACTGCAGGACTTCCTAAAGCAGGTGTGCCAGCGGTGCATACAGGGCGGGTGACTGGCGGTGTTCCGAAGGGTCCTGACCGCCCTGCGCCCCAGCCTCACCCCAAAGACCAAGATTCACTGGTGCAGAGAGCGGAACACATCCCTGCTGGAACCCGCACTCCCATGTGTGGTCACTGCAACATGGTTATCAGGGGTCCGTTCCTGGTGGCTATGGGGAAGTCGTGGCACCCGGAGGAGTTTAACTGCGCTCACTGCCGCAGCTCTCTGGCCGAGGTGGGCTTCGTGGAGGAGCGCGGCGCTGTTTACTGCGAGCACTGCTACGAGCAGTTCTTCGCCCCCACCTGCTGCCGTTGCCAGCAGAAGATCCTCGGGGAAGTCATCAATGCCCTGAAGCAAACCTGGCATGTGTATTGCTTCCTGTGCACCTCCTGCCAGCAGCCCATTCGCAACAACACCTTCCACCTCGAGGATGGACAGCCCTACTGCGAGAGAGACTATTACAATCTTTTCGGTACCAGTTGCCATGGCTGTGACTTCCCCATTGAGGCAGGGGACAAATTTCTGGAGGCTCTGGGCTTCACCTGGCATGATACCTGCTTCGTGTGTTCGGTGTGCAGCACCAGTCTAGAGGGTCAGGCTTTCTTCTCCAAAAAAGACAAGCCGCTGTGCAAGAAGCACGCTCACACTGTCAAAATCTGATCACAAGAAAAGCGGACTATgggatgaattttttttttttgttacaaaaaaGCTCAATCAGCttttagtgtttattatgtGAGAGTAATTTTTAAGGTATTGATAAAGACGTTACTGGGAAAAGTGGTTAGTTCTCTGATACGCTGATCGTTGGAGTACATACCGTACGTCGCTAGggtgtatgttttgtgtgtttcccTTTGTGGAGCTCTATGAAATAAAGTATTGATGAGAATCATGATGCTTTCAAAGACAGTAATATATAATTTGCTATGCTTTATATATTATCTGTCTTCTGCAATGGACATACTGATGagagctgtttgttttttttttttgttcatgtcattttaaatgtactgtTCTCATGgtgttttttcatctttttctatTGCTAATACATaatgatgtgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaagtagTTTGTAGTCAACATGACAGAGTGAGGTCAGATTGTTTTTGTTAAGAAATCTGAACTTCACAGAAACTAACGTGTCCTGGACCTTTTCTCCTAGGCTTCAATAATAAAAGATGTTTTGTCCGATTGCCTCTTAGCATGTAGGTGTTGATTCAGAGCTACACGTTTGATCATCGCTCACTCCTCCATCTCGCTTCTGCTACTCCAGGCTCTGGAGCATTTTCCCATGTATATTTATTGATGCATTTACGGGGTTCCTAATGGTTTCACACATATTTCACACTTCCGCTGAGTGTCAAGAGGAAAATTGGTTTAGCAGTTAACAGTGATGTTTTGTGTAAGGTGCATTTTGGAGCTGTGTGTTGAATCAGAAACTGAAATCCAGTGTACGGCGCTTGTCAGTGTATTACTTTAGCTACAATGAGCACATAATAATTCTTAATGTGCACTCTGGTGTTATGaaatgatctgtttttttttctccatctgttATGCAAAAGTTTGTCTCTTCCCAACTATGAAACGgggaaaataaacactgttctTAACAAGC
>XM_026943714.2
gttgagaagGAAGAAGCGGAAGTCCAAATTGTCGCCTGGGTTCTGAAGCTCGTCTGAAGTGTCGACGGTTTCAGTTCCACGCGAGCGCGCGAGCGGAGGCGGTAGTGCTTTCTCCTGTTTGCAGGTTTTAAGTTTGCTGAAGTTTGGAAGTGCTTgatccttcacacacacatacacacaccctgacaaCCGGACCACCATGAGCAGCAATTACAGCGTGTCCCTGATCGGACCCTCGCCCTGGGGCTTCAGACTGCAGGGGGGCAAAGACTTCAGCATGCCTCTCACCATCTCCAGAttgACGGATGGAGGAAAAGCGGCCAAAGCGAAGATCAGCATAGGAGATATCGTGCTGTCCATCGACGGCATCGCCACAAACACCATGACTCACCTGGAGGCTCAGAACAAGATCAAAGCCTGCACAGGCAATTTGAGCCTCACCCTGCAGAGAGCGTCCAGCGTTCCCAAAGGCGATGTACCCAAGGAGGAGCCAGTAACAAATGGGCCTCACAGTATTCTTAAAAAGCCTCCGCCCAGAGTTCCCAGGAAGCCCATCCCAGATACGGAGCTGGTGGTGAACCACGGCTCTCACCTGAGCGACGCCAGTAAAAAGCGTCTGATCGAGGACACGGAGGACTGGCGCCCACGCACTGGAACCTCTCAGTCCCGCTCCTTCCGCATCCTGGCACAGATCACGGGTACAGAGAACGaACAAGCCCACGAGAGCAGTCCCGGAAAGAATGAGGCTGTAGAGGACGTCCATGCGAACACTCACGCCACGTCCATGGTTAAAACCATGACCAAAGTGCCACACACTGGGAATGGAGTCCCTCCACCTACCACTGTGACTACCAAGAGCTGGCAGTCTGGAAACACTGCAGGACTTCCTAAAGCAGGTGTGCCAGCGGTGCATACAGGGCGGGTGACTGGCGGTGTTCCGAAGGGTCCTGACCGCCCTGCGCCCCAGCCTCACCCCAAAGACCAAGATTCACTGGTGCAGAGAGCGGAACACATCCCTGCTGGAACCCGCACTCCCATGTGTGGTCACTGCAACATGGTTATCAGGGGTCCGTTCCTGGTGGCTATGGGGAAGTCGTGGCACCCGGAGGAGTTTAACTGCGCTCACTGCCGCAGCTCTCTGGCCGAGGTGGGCTTCGTGGAGGAGCGCGGCGCTGTTTACTGCGAGCACTGCTACGAGCAGTTCTTCGCCCCCACCTGCTGCCGTTGCCAGCAGAAGATCCTCGGGGAAGTCATCAATGCCCTGAAGCAAACCTGGCATGTGTATTGCTTCCTGTGCACCTCCTGCCAGCAGCCCATTCGCAACAACACCTTCCACCTCGAGGATGGACAGCCCTACTGCGAGAGAGACTATTACAATCTTTTCGGTACCAGTTGCCATGGCTGTGACTTCCCCATTGAGGCAGGGGACAAATTTCTGGAGGCTCTGGGCTTCACCTGGCATGATACCTGCTTCGTGTGTTCGGTGTGCAGCACCAGTCTAGAGGGTCAGGCTTTCTTCTCCAAAAAAGACAAGCCGCTGTGCAAGAAGCACGCTCACACTGTCAAAATCTGATCACAAGAAAAGCGGACTATgggatgaattttttttttttgttacaaaaaaGCTCAATCAGCttttagtgtttattatgtGAGAGTAATTTTTAAGGTATTGATAAAGACGTTACTGGGAAAAGTGGTTAGTTCTCTGATACGCTGATCGTTGGAGTACATACCGTACGTCGCTAGggtgtatgttttgtgtgtttcccTTTGTGGAGCTCTATGAAATAAAGTATTGATGAGAATCATGATGCTTTCAAAGACAGTAATATATAATTTGCTATGCTTTATATATTATCTGTCTTCTGCAATGGACATACTGATGagagctgtttgttttttttttttgttcatgtcattttaaatgtactgtTCTCATGgtgttttttcatctttttctatTGCTAATACATaatgatgtgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaagtagTTTGTAGTCAACATGACAGAGTGAGGTCAGATTGTTTTTGTTAAGAAATCTGAACTTCACAGAAACTAACGTGTCCTGGACCTTTTCTCCTAGGCTTCAATAATAAAAGATGTTTTGTCCGATTGCCTCTTAGCATGTAGGTGTTGATTCAGAGCTACACGTTTGATCATCGCTCACTCCTCCATCTCGCTTCTGCTACTCCAGGCTCTGGAGCATTTTCCCATGTATATTTATTGATGCATTTACGGGGTTCCTAATGGTTTCACACATATTTCACACTTCCGCTGAGTGTCAAGAGGAAAATTGGTTTAGCAGTTAACAGTGATGTTTTGTGTAAGGTGCATTTTGGAGCTGTGTGTTGAATCAGAAACTGAAATCCAGTGTACGGCGCTTGTCAGTGTATTACTTTAGCTACAATGAGCACATAATAATTCTTAATGTGCACTCTGGTGTTATGaaatgatctgtttttttttctccatctgttATGCAAAAGTTTGTCTCTTCCCAACTATGAAACGgggaaaataaacactgttctTAACAAGC

Function

NR:

description
PDZ and LIM domain protein 7-like isoform X1

GO: NA

KEGG:

id description
K19867 PDLIM5_6_7; PDZ and LIM domain protein 5/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943713.2 True 3085 mRNA 0.50 13 4432696 4493792
XM_026943714.2 False 2581 mRNA 0.48 15 4432696 4493792

Neighbor

gene id symbol gene type direction distance location
opn4xa LOC108276607,LOC108435125 coding upstream 6578 4415574 ~ 4426118 (+)
LOC113544945 wdr70 coding upstream 74548 4319943 ~ 4358148 (+)
cplane1 c16h5orf42 coding upstream 114351 4294368 ~ 4318345 (+)
nup155 nup155,LOC107692018 coding upstream 149849 4269470 ~ 4282847 (+)
nipblb nipbl,LOC106563887 coding upstream 166464 4233018 ~ 4266232 (+)
bmpr1bb bmpr1b,LOC108435137 coding downstream 2680 4496472 ~ 4568363 (+)
glis3 LOC108277006 coding downstream 348289 4842081 ~ 4864137 (+)
rfx3 rfx3,LOC107710408 coding downstream 371776 4865568 ~ 4883273 (+)
LOC113544783 LOC108277320 coding downstream 500914 4994706 ~ 5016446 (+)
sgsm1b sgsm1b,LOC108276524,LOC108435151 coding downstream 564883 5058675 ~ 5074781 (+)
G263439 NA non-coding upstream 146490 4285977 ~ 4286206 (+)
G263025 NA non-coding upstream 246442 4185759 ~ 4186254 (+)
G262946 NA non-coding upstream 640189 3790141 ~ 3792507 (+)
G262894 NA non-coding upstream 733119 3695051 ~ 3699577 (+)
G262872 NA non-coding upstream 765253 3665524 ~ 3667443 (+)
G263566 NA non-coding downstream 4407 4498199 ~ 4499244 (+)
G263612 NA non-coding downstream 124274 4618066 ~ 4621490 (+)
G263634 NA non-coding downstream 227754 4721546 ~ 4775709 (+)
G263724 NA non-coding downstream 382453 4876245 ~ 4876505 (+)
G263715 NA non-coding downstream 389535 4883327 ~ 4884727 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 856559 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 1290943 3116169 ~ 3141753 (+)
pcp4a NA other upstream 1615433 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 1685379 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 3013207 1411986 ~ 1419489 (+)
triap1 triap1,LOC106568193 other downstream 584061 5077853 ~ 5080643 (+)
G264336 NA other downstream 1515008 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 1676101 6169893 ~ 6194681 (+)
G264948 NA other downstream 2573079 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 2622259 7116051 ~ 7126246 (+)

Expression


Co-expression Network