plekhb1 (plekhb1)


Basic Information

Item Value
gene id plekhb1
gene name plekhb1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4109608 ~ 4120030 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943720.2
CATTCACGTCGCTCTTCACTATCaaactgacattttttaaatctaacaggaattaatttttttctctccaagACTTCCAAAAAGACGGACAAGTGTCCTTTTAGATTTTGGAATATCTAGGATTTGGAGTCATGGCTCTGCTGAGATCAGGCTGGCTCTGGCGGCAGTCGTCAATCCTCAGGCGCTGGAAGCTGAACTGGTGTGACCTGTGGATAGACGGGAGTCTGGTGTTTTATATGACAGACTCAAGGAAGGACTATGAGACTAGAGTGAGTCTGAAGAGTacatgtgtgaatgtgaagtCTGGCCTGGAGTGTGCAGGCGTGTCTCCACCGGAGAGCCACCCGAGAGAGAATCTGTTGGTGTTGCACCTGAAGGACGGATCCACTGTGTTCCTGTGTGCTAACAGTGAGGATGAGGCTCTGGCTTGGAAGCTGACAATCATGGAAGCAAAGcaaagtcctttctatATTTATGATCCCTATAATGACACGTACCAGTCTGTTCCTGTTAATGGACACAATGCTGTGTACATCACGCCAGGCAGTGGCAGTGGAGGTACACACCATGTCTGGGTGCACAAGGAGCGCTGTGATAACTGGATTGGAGAGCAGATAGCACTGGGTTTGCTGGCTGGTATGGCAGCAGGCACTGTGCTACGCTCGTTCCTCTGGATGCCTCTGTGGTACTGCTGATACACCCGCTGGCTTCCAGACGATCCCATCTTAAGCCAGTCGCTGCAAGGCAGTAGAGAAAGACTTGGCTCTGACAGATTGCTTCTGTAGGCTTCAATCAGCTGCCCAAATGTGTACCGAATACACAAACGTACAACCAGTTACAAGGGTTAAATAGGATAAAGTGTAGCAGATGGTTTAAATCTCATTGGGCACCACATTGTATGGTTGTGTGAGGAGTGTCATATAGAAGAAGATGATGGAGAAGATCAAAGTATTGTcatttggtgtattttttttgcaatgtataTACATTTGGACCATACATTGGTTGCTATTTTGACAGTAGGGTTGAAATGCCTGAAGTTTGTTCCCCATAAAACAGTGGCTAGATGCACTTGTGTACTGCACTGAGCTATAATTTTAAATCAATTACCCAGAATTCACCACTAGAGGGTAGACACACTGCAGCAATGCAAATAAATTGACTTGTTGCTTGAA
>XM_034312551.1
tcAATATTAAGTCTATGGGCAGAGGGCACCAGAGCTACCAAGGAACCGCTTCCATGTTGGATAGGATAGATGAATCCCCAAAGAATcggttctgtgtgtttttaaacgATTCCTTTCAAGCAAGAAAGATTCGACATCATGGCGTCTTGTGCAAATATGTTTTCGAAATTCTAAATGTGCAACCATGCACAATTTGCAGTATGAGGACAGAGAGCTACAGATGGACCCCTTTAGTGCGTCAATCCTCAGGCGCTGGAAGCTGAACTGGTGTGACCTGTGGATAGACGGGAGTCTGGTGTTTTATATGACAGACTCAAGGAAGGACTATGAGACTAGAGTGAGTCTGAAGAGTacatgtgtgaatgtgaagtCTGGCCTGGAGTGTGCAGGCGTGTCTCCACCGGAGAGCCACCCGAGAGAGAATCTGTTGGTGTTGCACCTGAAGGACGGATCCACTGTGTTCCTGTGTGCTAACAGTGAGGATGAGGCTCTGGCTTGGAAGCTGACAATCATGGAAGCAAAGcaaagtcctttctatATTTATGATCCCTATAATGACACGTACCAGTCTGTTCCTGTTAATGGACACAATGCTGTGTACATCACGCCAGGCAGTGGCAGTGGAGGTACACACCATGTCTGGGTGCACAAGGAGCGCTGTGATAACTGGATTGGAGAGCAGATAGCACTGGGTTTGCTGGCTGGTATGGCAGCAGGCACTGTGCTACGCTCGTTCCTCTGGATGCCTCTGTGGTACTGCTGATACACCCGCTGGCTTCCAGACGATCCCATCTTAAGCCAGTCGCTGCAAGGCAGTAGAGAAAGACTTGGCTCTGACAGATTGCTTCTGTAGGCTTCAATCAGCTGCCCAAATGTGTACCGAATACACAAACGTACAACCAGTTACAAGGGTTAAATAGGATAAAGTGTAGCAGATGGTTTAAATCTCATTGGGCACCACATTGTATGGTTGTGTGAGGAGTGTCATATAGAAGAAGATGATGGAGAAGATCAAAGTATTGTcatttggtgtattttttttgcaatgtataTACATTTGGACCATACATTGGTTGCTATTTTGACAGTAGGGTTGAAATGCCTGAAGTTTGTTCCCCATAAAACAGTGGCTAGATGCACTTGTGTACTGCACTGAGCTATAATTTTAAATCAATTACCCAGAATTCACCACTAGAGGGTAGACACACTGCAGCAATGCAAATAAATTGACTTGTTGCTTGAA
>XM_034312553.1
CTGATGTAAACCTGCAGGTGTTGATTAAGCACTAGAGGAGTTGGCGGCTATGAAACCAGGCAACCATGATGAAGAAATAAACTGCTTCTTAAAGACGCGTCAATCCTCAGGCGCTGGAAGCTGAACTGGTGTGACCTGTGGATAGACGGGAGTCTGGTGTTTTATATGACAGACTCAAGGAAGGACTATGAGACTAGAGTGAGTCTGAAGAGTacatgtgtgaatgtgaagtCTGGCCTGGAGTGTGCAGGCGTGTCTCCACCGGAGAGCCACCCGAGAGAGAATCTGTTGGTGTTGCACCTGAAGGACGGATCCACTGTGTTCCTGTGTGCTAACAGTGAGGATGAGGCTCTGGCTTGGAAGCTGACAATCATGGAAGCAAAGcaaagtcctttctatATTTATGATCCCTATAATGACACGTACCAGTCTGTTCCTGTTAATGGACACAATGCTGTGTACATCACGCCAGGCAGTGGCAGTGGAGGTACACACCATGTCTGGGTGCACAAGGAGCGCTGTGATAACTGGATTGGAGAGCAGATAGCACTGGGTTTGCTGGCTGGTATGGCAGCAGGCACTGTGCTACGCTCGTTCCTCTGGATGCCTCTGTGGTACTGCTGATACACCCGCTGGCTTCCAGACGATCCCATCTTAAGCCAGTCGCTGCAAGGCAGTAGAGAAAGACTTGGCTCTGACAGATTGCTTCTGTAGGCTTCAATCAGCTGCCCAAATGTGTACCGAATACACAAACGTACAACCAGTTACAAGGGTTAAATAGGATAAAGTGTAGCAGATGGTTTAAATCTCATTGGGCACCACATTGTATGGTTGTGTGAGGAGTGTCATATAGAAGAAGATGATGGAGAAGATCAAAGTATTGTcatttggtgtattttttttgcaatgtataTACATTTGGACCATACATTGGTTGCTATTTTGACAGTAGGGTTGAAATGCCTGAAGTTTGTTCCCCATAAAACAGTGGCTAGATGCACTTGTGTACTGCACTGAGCTATAATTTTAAATCAATTACCCAGAATTCACCACTAGAGGGTAGACACACTGCAGCAATGCAAATAAATTGACTTGTTGCTTGAA
>XM_034312554.1
GTCTGGTTTAGGTCTGATACAAGTACGACCCTCTAGTGGTAGAACTGTGTGCATCAGAGACAAAAGGAGTCCTTCTGCTGAAGCACTGAAGCGTCAATCCTCAGGCGCTGGAAGCTGAACTGGTGTGACCTGTGGATAGACGGGAGTCTGGTGTTTTATATGACAGACTCAAGGAAGGACTATGAGACTAGAGTGAGTCTGAAGAGTacatgtgtgaatgtgaagtCTGGCCTGGAGTGTGCAGGCGTGTCTCCACCGGAGAGCCACCCGAGAGAGAATCTGTTGGTGTTGCACCTGAAGGACGGATCCACTGTGTTCCTGTGTGCTAACAGTGAGGATGAGGCTCTGGCTTGGAAGCTGACAATCATGGAAGCAAAGcaaagtcctttctatATTTATGATCCCTATAATGACACGTACCAGTCTGTTCCTGTTAATGGACACAATGCTGTGTACATCACGCCAGGCAGTGGCAGTGGAGGTACACACCATGTCTGGGTGCACAAGGAGCGCTGTGATAACTGGATTGGAGAGCAGATAGCACTGGGTTTGCTGGCTGGTATGGCAGCAGGCACTGTGCTACGCTCGTTCCTCTGGATGCCTCTGTGGTACTGCTGATACACCCGCTGGCTTCCAGACGATCCCATCTTAAGCCAGTCGCTGCAAGGCAGTAGAGAAAGACTTGGCTCTGACAGATTGCTTCTGTAGGCTTCAATCAGCTGCCCAAATGTGTACCGAATACACAAACGTACAACCAGTTACAAGGGTTAAATAGGATAAAGTGTAGCAGATGGTTTAAATCTCATTGGGCACCACATTGTATGGTTGTGTGAGGAGTGTCATATAGAAGAAGATGATGGAGAAGATCAAAGTATTGTcatttggtgtattttttttgcaatgtataTACATTTGGACCATACATTGGTTGCTATTTTGACAGTAGGGTTGAAATGCCTGAAGTTTGTTCCCCATAAAACAGTGGCTAGATGCACTTGTGTACTGCACTGAGCTATAATTTTAAATCAATTACCCAGAATTCACCACTAGAGGGTAGACACACTGCAGCAATGCAAATAAATTGACTTGTTGCTTGAA

Function

symbol description
plekhb1 Predicted to be involved in regulation of cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PLEKHB1 (pleckstrin homology domain containing B1).

NR:

description
pleckstrin homology domain-containing family B member 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943720.2 False 1175 mRNA 0.45 6 4115293 4120030
XM_034312551.1 True 1243 mRNA 0.46 6 4111345 4120030
XM_034312553.1 False 1104 mRNA 0.46 6 4109608 4120030
XM_034312554.1 False 1098 mRNA 0.46 6 4113518 4120030

Neighbor

gene id symbol gene type direction distance location
LOC113544790 LOC108276818,LOC108433289,LOC107743482 coding upstream 41199 4065892 ~ 4068409 (+)
phf12a phf12 coding upstream 49795 4046277 ~ 4059813 (+)
sez6a LOC108276888,LOC108441783,LOC106603277,LOC105890440,LOC105010768 coding upstream 68552 3975680 ~ 4041056 (+)
myo18aa LOC108276885 coding upstream 217800 3831359 ~ 3891808 (+)
LOC113544949 LOC108276970 coding upstream 450550 3655657 ~ 3659058 (+)
mrpl48 mrpl48 coding downstream 15781 4135811 ~ 4138929 (+)
dnajb13 dnajb13 coding downstream 19609 4139639 ~ 4147085 (+)
rsf1b.1 LOC108277234,LOC101064865,LOC107578164 coding downstream 44844 4164874 ~ 4177427 (+)
LOC113544702 icln coding downstream 60741 4180771 ~ 4185384 (+)
slc1a3b slc1a3,slc1a3b,LOC107653757,LOC107578186,LOC107741153,LOC107743401,LOC107697439 coding downstream 96838 4216868 ~ 4223965 (+)
G262946 NA non-coding upstream 317101 3790141 ~ 3792507 (+)
G262894 NA non-coding upstream 410031 3695051 ~ 3699577 (+)
G262872 NA non-coding upstream 442165 3665524 ~ 3667443 (+)
LOC113544951 LOC108276969 non-coding upstream 472943 3632261 ~ 3636665 (+)
G262852 NA non-coding upstream 486236 3622807 ~ 3623372 (+)
G263025 NA non-coding downstream 65729 4185759 ~ 4186254 (+)
G263439 NA non-coding downstream 165947 4285977 ~ 4286206 (+)
G263566 NA non-coding downstream 378169 4498199 ~ 4499244 (+)
G263612 NA non-coding downstream 498036 4618066 ~ 4621490 (+)
G263634 NA non-coding downstream 601516 4721546 ~ 4775709 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 533471 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 967855 3116169 ~ 3141753 (+)
pcp4a NA other upstream 1292345 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 1362291 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 2690119 1411986 ~ 1419489 (+)
triap1 triap1,LOC106568193 other downstream 957823 5077853 ~ 5080643 (+)
G264336 NA other downstream 1888770 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 2049863 6169893 ~ 6194681 (+)
G264948 NA other downstream 2946841 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 2996021 7116051 ~ 7126246 (+)

Expression


Co-expression Network