scarb1 (scarb1)


Basic Information

Item Value
gene id scarb1
gene name scarb1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7890041 ~ 7910255 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943772.2
GGCTACATTAACCGTGGTTCCAGGAAGAGCGGCTGGCTTAACCACAGTATTTATAAGGTGTTGTAAATATGAGCGGGGGTGAAATCTGGAACTTCGTATCCTGCTGCGTTTCTCTGAACTCATTCGAGAGTACACAGAAGAAGCCGTGTGACTCTTGCAAGCCAGTTGTAACTTCTTTCTTGACAATTCAGTGGCTTAAAAAACTGACCAGGGAGATTACAAGGCCATTAACTTCACGTGCAACATTTAGAGAATCAGCTTCAATATTTAAAGCGGTTACGTCCATTCTCCATGGCCACGTCAAAGTCTAAAAGAGCAATAGGACTTTCAGTGGTCGGACTTTTAGCAGTTGTTTTTGGGACTGTTCTTGTGTTTGTGGGACCAGTTGTTATCGACGATCAAATAATAAAGAATGTAGAAATCAACCCCCAAAATAACCTCTCCTACACTATGTGGAAAGACATTCCTGTACCATTTTTCATGTCCATATATTTTTTCAATGTTCTCAACCCTGAAGAGATATTGGCAGGAGAGAAGCCCACAGTTGAGCAAAGAGGTCCATACGTGTACAGGGAGAAGCGTTGGAAAGACAATATCACTTTCCATGACAACAAAACAGTGTCTTACCGTGAATATCGGCAGTATTTCTTTGAGGAGAGCATGTCTGTAGGCAATGAATCTGATATGGTCACCATCCCAAACATGCTAGTGCTGGGAGCATCAGTGATGATGGAGAATTTGCCCCTTCCACTGCGGAAAATGATAAGTATCACCTTCAAAACTTTTAAGGAGGGCCCCTTTGTGACAAAAACTGTAGGCGAGCTTATGTGGGGCTACGAAAGCAAGTTGCTGGACTTTCTGAACAACTTACTCCCTGGCATGATGCCATTTAAAGGGAACTTTGGACTATTTGTTGAGTTTAACAACTCCAACACTGGGTTGTTTACTGTCTTCACGGGTCAGGATGACATCAGGGTAGTTCACAAAGTGGATTCCTGGAATGGTTTGAAGAAAGTAAACTACTGGAAATCAGACCAGTGTAACATGATCAATGGTACAGCAGGGCAGATGTGGCCACCATTCATGACTACAGAATCCACTCTGCCATTTTACAGTCCAGATGCCTGCAGGTCAATGGAGCTGGTGTATAAGAGACCAGGAACTACGCAAGGAATCCCTGTGTATCATTTTGTGGCTCCAAAAACACTCTTTGCCAATGGCTCAGATTATCCTCCAAATGAAGGCTTCTGTCCATGCAGACAGTCAGGTCTTCTTGATGTTAGCACTTGCAGGCATAACTCCCCTACATTCATTTCCCATCCACATTTCTACAATGCTGATCCTGCCCTTTTGCAGACTGTCAATGGACTTAGCCCCAACGAGGATGACCATGGGCTCTTCATTGACATACATCCAGACACTGGAATACCTATGAATGTGTCTGTCAAGCTGCAACTTAACCTGTTAATGAAACAGGTATTAGGAATAACACAAACTGGTAAAATAGCTGAAGTAGTGATGCCTTTGCTTTGGTTTGGTGAGAGTGGCTACATTGATGGGCCTGTACTCAGTGTGTTCCGAATGAACCTTGTAATTTTACCTCTGGTGATAGAGTATATGCAGTACACCTTCATTGGACTTGGACTGGGCTGTATCATAGGAGCAATGGCGCTGCAACTTAGTAAGAAGATAGACAAGAAACAAGGGACATTTGGAGTCACAGAAGACAAGGGGGGAAGCAATAAAGACACAAATCATGATCCAACTCACAATGAAAAGTATATCGTAAAAGATACAGaaaaaaattagcattttcCAGGCCTGTGCAGATGAGAACCCAAGATCTTTGGACAATGGAAAAACTCTGTTGGTATATAACATCGAGTATTACAGTGCTTTCTCTGCTTTCATAGTGCTGACTTTCTTCAATCCTAATTCTAAGAATCACAGGAAACTGATGGTGGTGTTTGTATTTGGGTGACCTGGTAAAAGAGCATCTTAACCATGGACTTATAAAATTCTTACTTTGTTTCtaactttgtgtgttttttcagtttCCATGGTAGGCTACATCTGTGTTTGGATGTTTAAGAGCTGTTCATTTGGTGGGAGGCAGTCTTATTTATTCTGAGATTTAAACAGGGTAGAATGCAACTAAGCCATATCTGCAAattgttgcagtttttttttaaatacattttttagatTCTTCAAAAAGTATTTTTCGCTTAGCATTTCAGTTTGAAGTAGATTTACAAAAGAGCTCTGTTCATATTACTAAATGCACAAATGAGCTTcctatattaaaatatgtttattagaATGTTTCTTAAACAATAAGGAGGAACTAGAAATCTTATTTGCCATGAAACTGTAATGTTTTGTTAATTGTCTTGAAATATTTTGTGCTTCTTGGATAGTGGTTTGTACTAATATTGGAGTTCTCATATGCCAAAACAACCAAAGGATGAAATTATATGCACCATGAATACAGtttggatgggacaccagttcatcacgggtatataattcaaatgtcaaaattcTTATTCAAATACTTCCAAAATCCATAGCTTCCCTGCCAGAAAAAATAGAGTAAAGCCTTATCTCATTTTACCTAATTCTAACACTGGttaatttgaaaataatgaTCTTCAAATTATGGTGCCTAAACTCTGCTCAATTCACAAACAAATCTTGTTGCATATGTTTGAAGTTACAAATTGTAAGACCgtggtggatttttttctgatttccaTGTGTCATAGGTAAATTGGATATAAAATTAAGGGAATAGTTAGGGTCATGATTATCACAATTGATCATCTATCTCAGATACACAGAGCACACAGAGtagatacagatacacagagTAACATCTCAAAATTTATTACAACATAAATGTTAATAGTCATCTGAATATAACATAGTCTATATACAGTTTCTGCAGTTATCACTGTGCCTGAAGTCAAACTAAAATTCCAATAAGCtccattttttcatttactaGCCACAGATGGGTGACAGGACAAACCTGTGACTGGTCCTTAGAGAGAAGGGTCACTGTAAATCAATTCAAAGTTCTGACTAAACACCTTATcttatgatgaaatatttctatgcTGATGAGAGTGGACTTTTCCAGGATGACATACATTTTATAGATAAAACTATATAACTACTAAACAAAAGACTGCAGGTCTATTATTAAATAGCTTTATCTCTAATGGCAGAGCCATTCTAGATCTATGTATCCTCCTAAATTAGCTTAATTTTagaagaaatatacagtattaggCAGCATACAGAGCAACCAAGGTCTTCCTGTAGTTATCACAGCAGATATAGCCAGACATGCTAATCTCATGATGTGACATGTTTACTGCTGAAGTGACAGGCTATGCCCAAAGCAAAACTGATTGCACTGAGTTGGCTCAGCTGCTTAGGAAAATAACCTCCCTCTCTATGAGCACTTGACACCTATGCTGTCCAGACTGACTGAGATAGCAAAGGGAGACAACTTAGGGCTCCAGTTAGAGACTTCGAGATGCAGTAACAGGAGGTGGAGATCAGATggttgaaatgtgaaaaaaagataCTGATCATACTGATCTGGGCCACTTCAGCATATGCAGCAGACACAGCTGGCTCAATATTGTGGCTCAATTCATCCTACAGTAAACTCACGTTAAATAAACTCCTACACAGTTAAAATCCAATAAAATGGATTTTGTAAAACCACCTTGAGTTTTATTGTCActatataaacaaattattattattattattattattattattattattaatattcaaaataaaacctAATTAAAACATAATCTCCACTTTGTTCAATGAAAGTGTTTCAGCATTTAACAATTGTCCAGATTCTTATTGAAAAATGTTCTTCCAGCTGTGTGTGCAGCCACTGAAATTgagatttaattaattaattaataaaaccaacaaaattAATACAATTTGACAGCCATGCCAATTATTGACCACTTTGTCATTTTAtgtttgtattgtatatttaaccttgaaatgaaaaagaaaatacaactgAAACTCAGTCAAACCACCTGA
>XM_026943775.2
TTCCCAGCCGCCCGCATGCGACTATCCATTGAAAAGCTTAAACGCTCGCGACGCTATAAGGCGCGTGCGTGTTACAACAAGTGTTGGAAGTGTCATGTCTCGATCGAAGGAGATTCCCGAGGACCTCAAAAAGAATTATCAATGTTCACCAGGATGGAAAAGAATGTAGAAATCAACCCCCAAAATAACCTCTCCTACACTATGTGGAAAGACATTCCTGTACCATTTTTCATGTCCATATATTTTTTCAATGTTCTCAACCCTGAAGAGATATTGGCAGGAGAGAAGCCCACAGTTGAGCAAAGAGGTCCATACGTGTACAGGGAGAAGCGTTGGAAAGACAATATCACTTTCCATGACAACAAAACAGTGTCTTACCGTGAATATCGGCAGTATTTCTTTGAGGAGAGCATGTCTGTAGGCAATGAATCTGATATGGTCACCATCCCAAACATGCTAGTGCTGGGAGCATCAGTGATGATGGAGAATTTGCCCCTTCCACTGCGGAAAATGATAAGTATCACCTTCAAAACTTTTAAGGAGGGCCCCTTTGTGACAAAAACTGTAGGCGAGCTTATGTGGGGCTACGAAAGCAAGTTGCTGGACTTTCTGAACAACTTACTCCCTGGCATGATGCCATTTAAAGGGAACTTTGGACTATTTGTTGAGTTTAACAACTCCAACACTGGGTTGTTTACTGTCTTCACGGGTCAGGATGACATCAGGGTAGTTCACAAAGTGGATTCCTGGAATGGTTTGAAGAAAGTAAACTACTGGAAATCAGACCAGTGTAACATGATCAATGGTACAGCAGGGCAGATGTGGCCACCATTCATGACTACAGAATCCACTCTGCCATTTTACAGTCCAGATGCCTGCAGGTCAATGGAGCTGGTGTATAAGAGACCAGGAACTACGCAAGGAATCCCTGTGTATCATTTTGTGGCTCCAAAAACACTCTTTGCCAATGGCTCAGATTATCCTCCAAATGAAGGCTTCTGTCCATGCAGACAGTCAGGTCTTCTTGATGTTAGCACTTGCAGGCATAACTCCCCTACATTCATTTCCCATCCACATTTCTACAATGCTGATCCTGCCCTTTTGCAGACTGTCAATGGACTTAGCCCCAACGAGGATGACCATGGGCTCTTCATTGACATACATCCAGACACTGGAATACCTATGAATGTGTCTGTCAAGCTGCAACTTAACCTGTTAATGAAACAGGTATTAGGAATAACACAAACTGGTAAAATAGCTGAAGTAGTGATGCCTTTGCTTTGGTTTGGTGAGAGTGGCTACATTGATGGGCCTGTACTCAGTGTGTTCCGAATGAACCTTGTAATTTTACCTCTGGTGATAGAGTATATGCAGTACACCTTCATTGGACTTGGACTGGGCTGTATCATAGGAGCAATGGCGCTGCAACTTAGTAAGAAGATAGACAAGAAACAAGGGACATTTGGAGTCACAGAAGACAAGGGGGGAAGCAATAAAGACACAAATCATGATCCAACTCACAATGAAAAGTATATCGTAAAAGATACAGaaaaaaattagcattttcCAGGCCTGTGCAGATGAGAACCCAAGATCTTTGGACAATGGAAAAACTCTGTTGGTATATAACATCGAGTATTACAGTGCTTTCTCTGCTTTCATAGTGCTGACTTTCTTCAATCCTAATTCTAAGAATCACAGGAAACTGATGGTGGTGTTTGTATTTGGGTGACCTGGTAAAAGAGCATCTTAACCATGGACTTATAAAATTCTTACTTTGTTTCtaactttgtgtgttttttcagtttCCATGGTAGGCTACATCTGTGTTTGGATGTTTAAGAGCTGTTCATTTGGTGGGAGGCAGTCTTATTTATTCTGAGATTTAAACAGGGTAGAATGCAACTAAGCCATATCTGCAAattgttgcagtttttttttaaatacattttttagatTCTTCAAAAAGTATTTTTCGCTTAGCATTTCAGTTTGAAGTAGATTTACAAAAGAGCTCTGTTCATATTACTAAATGCACAAATGAGCTTcctatattaaaatatgtttattagaATGTTTCTTAAACAATAAGGAGGAACTAGAAATCTTATTTGCCATGAAACTGTAATGTTTTGTTAATTGTCTTGAAATATTTTGTGCTTCTTGGATAGTGGTTTGTACTAATATTGGAGTTCTCATATGCCAAAACAACCAAAGGATGAAATTATATGCACCATGAATACAGtttggatgggacaccagttcatcacgggtatataattcaaatgtcaaaattcTTATTCAAATACTTCCAAAATCCATAGCTTCCCTGCCAGAAAAAATAGAGTAAAGCCTTATCTCATTTTACCTAATTCTAACACTGGttaatttgaaaataatgaTCTTCAAATTATGGTGCCTAAACTCTGCTCAATTCACAAACAAATCTTGTTGCATATGTTTGAAGTTACAAATTGTAAGACCgtggtggatttttttctgatttccaTGTGTCATAGGTAAATTGGATATAAAATTAAGGGAATAGTTAGGGTCATGATTATCACAATTGATCATCTATCTCAGATACACAGAGCACACAGAGtagatacagatacacagagTAACATCTCAAAATTTATTACAACATAAATGTTAATAGTCATCTGAATATAACATAGTCTATATACAGTTTCTGCAGTTATCACTGTGCCTGAAGTCAAACTAAAATTCCAATAAGCtccattttttcatttactaGCCACAGATGGGTGACAGGACAAACCTGTGACTGGTCCTTAGAGAGAAGGGTCACTGTAAATCAATTCAAAGTTCTGACTAAACACCTTATcttatgatgaaatatttctatgcTGATGAGAGTGGACTTTTCCAGGATGACATACATTTTATAGATAAAACTATATAACTACTAAACAAAAGACTGCAGGTCTATTATTAAATAGCTTTATCTCTAATGGCAGAGCCATTCTAGATCTATGTATCCTCCTAAATTAGCTTAATTTTagaagaaatatacagtattaggCAGCATACAGAGCAACCAAGGTCTTCCTGTAGTTATCACAGCAGATATAGCCAGACATGCTAATCTCATGATGTGACATGTTTACTGCTGAAGTGACAGGCTATGCCCAAAGCAAAACTGATTGCACTGAGTTGGCTCAGCTGCTTAGGAAAATAACCTCCCTCTCTATGAGCACTTGACACCTATGCTGTCCAGACTGACTGAGATAGCAAAGGGAGACAACTTAGGGCTCCAGTTAGAGACTTCGAGATGCAGTAACAGGAGGTGGAGATCAGATggttgaaatgtgaaaaaaagataCTGATCATACTGATCTGGGCCACTTCAGCATATGCAGCAGACACAGCTGGCTCAATATTGTGGCTCAATTCATCCTACAGTAAACTCACGTTAAATAAACTCCTACACAGTTAAAATCCAATAAAATGGATTTTGTAAAACCACCTTGAGTTTTATTGTCActatataaacaaattattattattattattattattattattattattaatattcaaaataaaacctAATTAAAACATAATCTCCACTTTGTTCAATGAAAGTGTTTCAGCATTTAACAATTGTCCAGATTCTTATTGAAAAATGTTCTTCCAGCTGTGTGTGCAGCCACTGAAATTgagatttaattaattaattaataaaaccaacaaaattAATACAATTTGACAGCCATGCCAATTATTGACCACTTTGTCATTTTAtgtttgtattgtatatttaaccttgaaatgaaaaagaaaatacaactgAAACTCAGTCAAACCACCTGA
>XM_034312582.1
TTCCCAGCCGCCCGCATGCGACTATCCATTGAAAAGCTTAAACGCTCGCGACGCTATAAGGCGCGTGCGTGTTACAACAAGTGTTGGAAGTGTCATGTCTCGATCGAAGGAGATTCCCGAGGACCTCAAAAAGAATTATCAATGTTCACCAGGATGGAAAAGAATGTAGAAATCAACCCCCAAAATAACCTCTCCTACACTATGTGGAAAGACATTCCTGTACCATTTTTCATGTCCATATATTTTTTCAATGTTCTCAACCCTGAAGAGATATTGGCAGGAGAGAAGCCCACAGTTGAGCAAAGAGGTCCATACGTGTACAGGGAGAAGCGTTGGAAAGACAATATCACTTTCCATGACAACAAAACAGTGTCTTACCGTGAATATCGGCAGTATTTCTTTGAGGAGAGCATGTCTGTAGGCAATGAATCTGATATGGTCACCATCCCAAACATGCTAGTGCTGGGAGCATCAGTGATGATGGAGAATTTGCCCCTTCCACTGCGGAAAATGATAAGTATCACCTTCAAAACTTTTAAGGAGGGCCCCTTTGTGACAAAAACTGTAGGCGAGCTTATGTGGGGCTACGAAAGCAAGTTGCTGGACTTTCTGAACAACTTACTCCCTGGCATGATGCCATTTAAAGGGAACTTTGGACTATTTGTTGAGTTTAACAACTCCAACACTGGGTTGTTTACTGTCTTCACGGGTCAGGATGACATCAGGGTAGTTCACAAAGTGGATTCCTGGAATGGTTTGAAGAAAGTAAACTACTGGAAATCAGACCAGTGTAACATGATCAATGGTACAGCAGGGCAGATGTGGCCACCATTCATGACTACAGAATCCACTCTGCCATTTTACAGTCCAGATGCCTGCAGGTCAATGGAGCTGGTGTATAAGAGACCAGGAACTACGCAAGGAATCCCTGTGTATCATTTTGTGGCTCCAAAAACACTCTTTGCCAATGGCTCAGATTATCCTCCAAATGAAGGCTTCTGTCCATGCAGACAGTCAGGTCTTCTTGATGTTAGCACTTGCAGGCATAACTCCCCTACATTCATTTCCCATCCACATTTCTACAATGCTGATCCTGCCCTTTTGCAGACTGTCAATGGACTTAGCCCCAACGAGGATGACCATGGGCTCTTCATTGACATACATCCAGACACTGGAATACCTATGAATGTGTCTGTCAAGCTGCAACTTAACCTGTTAATGAAACAGGTATTAGGAATAACACAAACTGGTAAAATAGCTGAAGTAGTGATGCCTTTGCTTTGGTTTGGTGAGAGTGGCTACATTGATGGGCCTGTACTCAGTGTGTTCCGAATGAACCTTGTAATTTTACCTCTGGTGATAGAGTATATGCAGTACACCTTCATTGGACTTGGACTGGGCTGTATCATAGGAGCAATGGCGCTGCAACTTAGTAAGAAGATAGACAAGAAACAAGGGACATTTGGAGTCACAGAAGACAAGGGGGAAGCAATAAAGACACAAATCATGATCCAACTCACAATGAAAAGTATATCGTAAAAGATACAG
>XM_034312583.1
TTCCCAGCCGCCCGCATGCGACTATCCATTGAAAAGCTTAAACGCTCGCGACGCTATAAGGCGCGTGCGTGTTACAACAAGTGTTGGAAGTGTCATGTCTCGATCGAAGGAGATTCCCGAGGACCTCAAAAAGAATTATCAATGTTCACCAGGATGGAAAAGAATGTAGAAATCAACCCCCAAAATAACCTCTCCTACACTATGTGGAAAGACATTCCTGTACCATTTTTCATGTCCATATATTTTTTCAATGTTCTCAACCCTGAAGAGATATTGGCAGGAGAGAAGCCCACAGTTGAGCAAAGAGGTCCATACGTGTACAGGGAGAAGCGTTGGAAAGACAATATCACTTTCCATGACAACAAAACAGTGTCTTACCGTGAATATCGGCAGTATTTCTTTGAGGAGAGCATGTCTGTAGGCAATGAATCTGATATGGTCACCATCCCAAACATGCTAGTGCTGGGAGCATCAGTGATGATGGAGAATTTGCCCCTTCCACTGCGGAAAATGATAAGTATCACCTTCAAAACTTTTAAGGAGGGCCCCTTTGTGACAAAAACTGTAGGCGAGCTTATGTGGGGCTACGAAAGCAAGTTGCTGGACTTTCTGAACAACTTACTCCCTGGCATGATGCCATTTAAAGGGAACTTTGGACTATTTGTTGAGTTTAACAACTCCAACACTGGGTTGTTTACTGTCTTCACGGGTCAGGATGACATCAGGGTAGTTCACAAAGTGGATTCCTGGAATGGTTTGAAGAAAGTAAACTACTGGAAATCAGACCAGTGTAACATGATCAATGGTACAGCAGGGCAGATGTGGCCACCATTCATGACTACAGAATCCACTCTGCCATTTTACAGTCCAGATGCCTGCAGGTCAATGGAGCTGGTGTATAAGAGACCAGGAACTACGCAAGGAATCCCTGTGTATCATTTTGTGGCTCCAAAAACACTCTTTGCCAATGGCTCAGATTATCCTCCAAATGAAGGCTTCTGTCCATGCAGACAGTCAGGTCTTCTTGATGTTAGCACTTGCAGGCATAACTCCCCTACATTCATTTCCCATCCACATTTCTACAATGCTGATCCTGCCCTTTTGCAGACTGTCAATGGACTTAGCCCCAACGAGGATGACCATGGGCTCTTCATTGACATACATCCAGACACTGGAATACCTATGAATGTGTCTGTCAAGCTGCAACTTAACCTGTTAATGAAACAGGTATTAGGAATAACACAAACTGGTAAAATAGCTGAAGTAGTGATGCCTTTGCTTTGGTTTGGTGAGAGTGGCTACATTGATGGGCCTGTACTCAGTGTGTTCCGAATGAACCTTGTAATTTTACCTCTGGTGATAGAGTATATGCAGTACACCTTCATTGGACTTGGACTGGGCTGTATCATAGGAGCAATGGCGCTGCAACTTAGTAAGAAGATAGACAAGAAACAAGGGACATTTGGAGTCACAGAAGACAAGGGGAGTTGAAGTCAAGATCAGAGCCCCCAAAACATAGACCCCGACCAAGACCACATATAACCAAGACCCCGGCCAAATGccaaaattttttaaactttgaaaTAGATAGGAAACATTTACATCCACCAGTGTGGTTCTAGTAACTGTAACTATGGTTCTATGAACCCCAGATAACCAACAGGAGTGGTGGGAATCATCTGGTCACCTACTCATTTGCAGATATGCACATTTGCCATGACCTGTCagcaaagtcacaaagtgatgTATTTGCAATAATTACTGCTGGCATACAGCCACTTTTGTCTGGACCCAGCTTGCCAAGTTGCCAGGTTGGACCTGGACAAGGAACCACAAGGTCACCAGAGTCACCTAGCCACCAATGCATGCATGGCAAACTGTTCACCAGAGCATATAGTTATTCAGCACTTTTTGCTGAAGTGATCACTACTGAAAAGAGGCACTAATTTCAATCAGTTCAAGGGACTCCAGCACAAGAGGTATATCCCCAGCACAAGGGGGAGATCCGTGCTGGGTTCTTAGGGAAACATTGTGGATGTAGCGGAAGACCAGTCATTGGGCTCTGTTCCAGTCATTGGGCTCTGAGAGTTGTGtggtctcactctctgtcttttaaatgataaatgcagAGGCATTGAGCACATAGCTGCACAAGTGTGAGTCTTGCAGTATGGGTCTTTAAGCCTTTAAATTGAAGAACATgaaatgaggaaaatctgaccgaAAGTGAAACAAATGTGGGGTCCACTGTATTGAGAGAAAACCCCAGTTTCAGAGCTGTGTATTAGTGGAAATCTAGCTCAATAGGCAAACACAAAAAAGCAGTGAACAGCtgtgaaaaagggaaaaaccACTCAACCAGGCTATCAGCATTAAGCCACAGGCTCACTAGATCGTAGGAGATGTGGAATAATAGACGGGGGAAAATAGCCAGTGGGATGAATGAGCAGTAAATGCTAAATTCTAAGCTCTACACAGTGCAAGAAGCCATGGAGTTCCATAGTATTATATGAAAAAAGGCACTAGTAATGTGAAAAAATACACTTATTGAATAACAGGTGAGAGGATGCTATTCCCAGCCTTGGAGCAGTTAGCTCTTCATAGTGAACAGTTTGTCAGacatagatgtttattttatgacttcttcATTGCTGCATCAATTAAAGAAATAGATTtccaaacaaaattaaatgctacagaaaaattTCTGTATGTTAGTAAAGAAGGTGATATATTAAATAATCGATCCGTGCTGGCTCTCAGGGAttacctgcaaaaacagaagcaagtttCACAGTCAaggtctccagaagaactgtggcaggttCTCCAAGAAGTTTAGAAAAACTTACTAGCTAGTGTTCTCATAAAATTGTATGAAGTGTACCAGAGACtaatgatgtatttttaaaacccAATATTTAGATTGTGCTTTagtgctgtttactgctctttatagaaaTTCTTTtgtagaaaacattttatttaattatttttgaattcatctttgctttacagcatttcgtTAAATGTGCcttagacttttgcacagtactgtatatgaggtgagaagaagaaaaaggaaaatggcTTTATGACAGtgttatttattgcaaatacagCATCCTATGCCACTTTGTAAAAGGTCTTGCCATGCGTGTACAAGTCATACAAtggtatccaggtgattctcccTGGTGGTTAGAAGGGGTGAAACAGAACATTCAGTTTTAAGCAATAATGCTAGCTAAAAACAACATTATCTACATTGTAATCTCAAAAGCAAAATAGGTGTAACATGGCTGGCTAGTCACTTACCATCCTGGAAATATTCATGGATCATTAACGATTGTACACCGCTAAAAGCTGGTGCTATTAAACATGTTAATTACATGCATATAGTGCATTTGCTTTTTGCTATTGCTGCTAATGCTATTGCATATTATTTAGTACTGCTGGTGGGCAGGTAATAATGGTGGTGGTCTTACAGTATAGCATGAACTGGTCAATTCTTTTCAATCAACATTGCAAGcgtatgtacaaaaaaaaagttataagcAAGATAAGGTCTTGAATTTTCTGTACTGTTTATATGTATGATTTAAATACTGATCCTAGGTATGGTTTTAATTAAGGCAAGAAACACATGATGATTGCAAATAAACAATGCCCAAATGGACCAGTGGTTATTATACAGgaagctgatttaaaaaaaaaaaaaaaattatttttttttttttttttaaagtctcaA

Function

symbol description
scarb1 Predicted to enable lipid binding activity; low-density lipoprotein particle binding activity; and scavenger receptor activity. Predicted to be involved in cholesterol transport; plasma lipoprotein particle clearance; and recognition of apoptotic cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in caveola and cytoplasm. Is expressed in adaxial cell; segmental plate; somite; xanthophore; and yolk syncytial layer. Orthologous to human SCARB1 (scavenger receptor class B member 1).

NR:

description
PREDICTED: scavenger receptor class B member 1 isoform X2

GO: NA

KEGG:

id description
K13885 SCARB1; scavenger receptor class B, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943772.2 True 4089 mRNA 0.38 14 7891511 7910255
XM_026943775.2 False 3840 mRNA 0.38 14 7890041 7910255
XM_034312582.1 False 1548 mRNA 0.44 13 7890041 7906763
XM_034312583.1 False 3754 mRNA 0.40 13 7890041 7906631

Neighbor

gene id symbol gene type direction distance location
ubc ubb,ubc,LOC107553588,LOC100190459,LOC100194618,LOC105015226,LOC107658630 coding upstream 25898 7860866 ~ 7864143 (+)
tpst2 tpst2,ubc coding upstream 31216 7855327 ~ 7858825 (+)
LOC113544706 sez6l,LOC108276519,LOC107741658,LOC107758626 coding upstream 34100 7785678 ~ 7855941 (+)
LOC113544796 myo18b,LOC108276812 coding upstream 119597 7718055 ~ 7770444 (+)
grk3 grk3,LOC108276813 coding upstream 172692 7628081 ~ 7717349 (+)
cetn3 cetn3,LOC107589032,LOC107602084,LOC107758597,LOC107658563,LOC107689496 coding downstream 26973 7937228 ~ 7944128 (+)
LOC117595648 NA coding downstream 289825 8200080 ~ 8217268 (+)
LOC113544932 NA coding downstream 364792 8275047 ~ 8276323 (+)
rnft1 rnft1 coding downstream 805174 8715429 ~ 8731985 (+)
si:ch211-244c8.4 LOC108277057 coding downstream 1162174 9072429 ~ 9076274 (+)
G265420 NA non-coding upstream 37776 7851915 ~ 7852265 (+)
G265419 NA non-coding upstream 38412 7851370 ~ 7851629 (+)
G265418 NA non-coding upstream 41007 7848803 ~ 7849034 (+)
G265383 NA non-coding upstream 42164 7844793 ~ 7847877 (+)
G265417 NA non-coding upstream 45385 7843789 ~ 7844656 (+)
LOC117599395 NA non-coding downstream 65404 7975659 ~ 7977423 (+)
G265490 hapln1,LOC108261073,LOC108425247 non-coding downstream 72404 7982659 ~ 7986096 (+)
G265520 NA non-coding downstream 185148 8095403 ~ 8097573 (+)
G265544 NA non-coding downstream 278925 8189180 ~ 8189799 (+)
G265553 NA non-coding downstream 286326 8196581 ~ 8253208 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 763795 7116051 ~ 7126246 (+)
G264948 NA other upstream 807600 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 1695360 6169893 ~ 6194681 (+)
G264336 NA other upstream 1878139 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2809398 5077853 ~ 5080643 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 265259 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 419450 8329705 ~ 8353841 (+)
G265696 NA other downstream 723380 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 758559 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 1346688 9256943 ~ 9264111 (+)

Expression


Co-expression Network