wscd1b (LOC108276571)


Basic Information

Item Value
gene id wscd1b
gene name LOC108276571
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3263413 ~ 3276731 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943789.2
gcggcGCGCGCTCACCGAAGTTAACGCCgtagggaggaaaaaaaaacaaaaaaactcgtATTTAAACGCGTCGTATTTACGGAGTGTTTAATGGAGATCCACAGGTGACACGCGCTCCGTTACGAGCCGGTAAAGATGGCACGCGCATAGTGACAGTGTGCAGCACATCGGCAGGTTCATCGAGTGTTTTTAAAGACACTGTGTTTTTTCTGAAAACTGGAGCCCTTTAACTGGAGACTTTTACCAGGCACAAGAACAAGAACCAGAAAGTGtttgatgatgaggaggagaacATTCTGAGAACAGAAAtcatctttgtgttttttaaagtgtgGTGAACATTGAGTTAAAAGCATGGCTAAAACCTTCTACAGACTGCAGCGCTTTTTAAGACAGGCCCAattgctgtttctttttctggGTGTGGCTTACATCATGGCAGGAAGTGTGCTGCTGCTCCAGCGTTCCAATGTGGCCTTGTTTCAAAAAGGAACCTATCTGCCCTCGTCATTACTCTCCGTACCATTGCCCCCTAGATCCCTGGAGGCACCTAGTGTTAGCTGGCACCACAGGAGACCTGGATCCACAATAATTCAGGATGTGGAGAATAATCCGGATCTGTCAGGAAGTAGAGCGGATCGAGAACGGTTCGTGTCTCGGAACCTGAAGATTAGGCACCTGAGACGACACTGGATTCAGGGCcggagaacagaagagaactCAGCAGAACATAATCCATCAAATTCATCATGGAGCAGGGACAGCAGACATAAAGGCACCTACATCGGGTGCTTCCTAAATGACGACAAACAACATGCTCTTGGAGGAACCGTGCTTTACGACTTCCGAAAAATGACCAGCTCCTTGTGCCAAGACACCTGCTCTGAGAGTGGCTACCGGTTTGCTGGGCTGGAATATGGCACAGAGTGTCACTGTGGGAACCGGATCAGCGCCCCTCGGGCCCGGAGCGAGGACTGCAACCTGAACTGCAGGGGTGAAAGGGACTCGCTGTGTGGAGGCGTGGCCAGACTGTCAATCTACAAAGTGGAGGAGGGGCGTCCTGGCCACAGGAGATacagaaATGTCCACTATCATGGCTGCTTTCATACGCCAAAGAACATCAGTGCTGGTTTCCTGCTCCATGCCAGCCAGCAGAACATAACTTCACAGCTGTGTGTGGAGATGTGCACTGATCAGGAGCTGCCTCTGGCTGTACTGAGGGGGCAGGACTGTCTCTGTGGCCACACCTCCACTTTTCTCCTAATGCAGAAGAATGTAGACAGGCAGCTGTGTGGGCAGAGCAAAGCTACAAACCACACCTCCAGTGCAGACTACTCACAGGTGTACAGCACACCTGTGCTAGAGTCTCAGTGTAGGGAGAGGATGTTTCTGCCTGAGAGCTCGTCTTCCCTCACAGCGCTATCCAGTTTTCCTGGAGCGGGTAACACTTGGCTGCGGCACCTCATCGAGCTTGCTACAGGTTACTACACGGGCAGCTACTATTTTGATGGCTCTTTGTACAACAAAGgctTTAAAGGAGAGAAAGATTACTGGAGAAGTGGGAGAACCATCTGTGTAAAGACGCATGAGAGCGGGCAGAGGGAGATCAAGAAATTCGAATCAGCCATCCTGTTAATTCGGAACCCGTACCACTGCCTCGTGGCAGAGTTTAATCGCAAAAATGCTGGGCATCTGGGCTACGCAACAGACACGCTCTGGAAGAGTAAAGAGTGGCCAGAGTTTGTGGAGACGTACTCCTCATGGTGGGCGTCTCACGCTCTGGCCTGGCTACAGTTCTGCAGACGTTTGCTGGTGGTGCACTACGAACAGCTCCTCACGGACCTCGTAAACCAGCTCCGGCTCATGACAGCCTTCCTGAATGTCACCGTTCCTGAAGAACGGCTCCTGTGTGCCGAGAGAAACCGAGACGGCCACTTCAAACGCACAGGGTCTCGACGTCTCACCTTCGACCCCTTCACAGAGGGCATGAGAACTCGTATAGATGGCTACATGCAGGAGGTTGACCATGCTCTTAGGGACAGAAATCTGAGCGGCCTGAGACAGGAATACATGCCCAGATGATGACCGCTAATAAGCTGGTGCAAGAGGATGTTGAATTTCTCTCTGCAGGTCGGAACGAGGGGATAAAAAGTGCCTGGGAACTCACAGTTAATTAACACATCTTGTGGCCTTCTAGTGGTTTatgctctttttctttatgGTCATGTTACCTGAATAAACAGCAACTCAGTTTGTGGTTTGTACACATTAAA
>XM_026943790.2
CACAGCTGGATACAAAAGGGATGAGAAACACTGGAATAAGGAACtgatcagGTTCATCGAGTGTTTTTAAAGACACTGTGTTTTTTCTGAAAACTGGAGCCCTTTAACTGGAGACTTTTACCAGGCACAAGAACAAGAACCAGAAAGTGtttgatgatgaggaggagaacATTCTGAGAACAGAAAtcatctttgtgttttttaaagtgtgGTGAACATTGAGTTAAAAGCATGGCTAAAACCTTCTACAGACTGCAGCGCTTTTTAAGACAGGCCCAattgctgtttctttttctggGTGTGGCTTACATCATGGCAGGAAGTGTGCTGCTGCTCCAGCGTTCCAATGTGGCCTTGTTTCAAAAAGGAACCTATCTGCCCTCGTCATTACTCTCCGTACCATTGCCCCCTAGATCCCTGGAGGCACCTAGTGTTAGCTGGCACCACAGGAGACCTGGATCCACAATAATTCAGGATGTGGAGAATAATCCGGATCTGTCAGGAAGTAGAGCGGATCGAGAACGGTTCGTGTCTCGGAACCTGAAGATTAGGCACCTGAGACGACACTGGATTCAGGGCcggagaacagaagagaactCAGCAGAACATAATCCATCAAATTCATCATGGAGCAGGGACAGCAGACATAAAGGCACCTACATCGGGTGCTTCCTAAATGACGACAAACAACATGCTCTTGGAGGAACCGTGCTTTACGACTTCCGAAAAATGACCAGCTCCTTGTGCCAAGACACCTGCTCTGAGAGTGGCTACCGGTTTGCTGGGCTGGAATATGGCACAGAGTGTCACTGTGGGAACCGGATCAGCGCCCCTCGGGCCCGGAGCGAGGACTGCAACCTGAACTGCAGGGGTGAAAGGGACTCGCTGTGTGGAGGCGTGGCCAGACTGTCAATCTACAAAGTGGAGGAGGGGCGTCCTGGCCACAGGAGATacagaaATGTCCACTATCATGGCTGCTTTCATACGCCAAAGAACATCAGTGCTGGTTTCCTGCTCCATGCCAGCCAGCAGAACATAACTTCACAGCTGTGTGTGGAGATGTGCACTGATCAGGAGCTGCCTCTGGCTGTACTGAGGGGGCAGGACTGTCTCTGTGGCCACACCTCCACTTTTCTCCTAATGCAGAAGAATGTAGACAGGCAGCTGTGTGGGCAGAGCAAAGCTACAAACCACACCTCCAGTGCAGACTACTCACAGGTGTACAGCACACCTGTGCTAGAGTCTCAGTGTAGGGAGAGGATGTTTCTGCCTGAGAGCTCGTCTTCCCTCACAGCGCTATCCAGTTTTCCTGGAGCGGGTAACACTTGGCTGCGGCACCTCATCGAGCTTGCTACAGGTTACTACACGGGCAGCTACTATTTTGATGGCTCTTTGTACAACAAAGgctTTAAAGGAGAGAAAGATTACTGGAGAAGTGGGAGAACCATCTGTGTAAAGACGCATGAGAGCGGGCAGAGGGAGATCAAGAAATTCGAATCAGCCATCCTGTTAATTCGGAACCCGTACCACTGCCTCGTGGCAGAGTTTAATCGCAAAAATGCTGGGCATCTGGGCTACGCAACAGACACGCTCTGGAAGAGTAAAGAGTGGCCAGAGTTTGTGGAGACGTACTCCTCATGGTGGGCGTCTCACGCTCTGGCCTGGCTACAGTTCTGCAGACGTTTGCTGGTGGTGCACTACGAACAGCTCCTCACGGACCTCGTAAACCAGCTCCGGCTCATGACAGCCTTCCTGAATGTCACCGTTCCTGAAGAACGGCTCCTGTGTGCCGAGAGAAACCGAGACGGCCACTTCAAACGCACAGGGTCTCGACGTCTCACCTTCGACCCCTTCACAGAGGGCATGAGAACTCGTATAGATGGCTACATGCAGGAGGTTGACCATGCTCTTAGGGACAGAAATCTGAGCGGCCTGAGACAGGAATACATGCCCAGATGATGACCGCTAATAAGCTGGTGCAAGAGGATGTTGAATTTCTCTCTGCAGGTCGGAACGAGGGGATAAAAAGTGCCTGGGAACTCACAGTTAATTAACACATCTTGTGGCCTTCTAGTGGTTTatgctctttttctttatgGTCATGTTACCTGAATAAACAGCAACTCAGTTTGTGGTTTGTACACATTAAA

Function

NR:

description
PREDICTED: WSC domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943789.2 True 2273 mRNA 0.50 9 3263413 3276731
XM_026943790.2 False 2150 mRNA 0.50 9 3263413 3272926

Neighbor

gene id symbol gene type direction distance location
LOC117599375 LOC108277124 coding downstream 180372 3074500 ~ 3083041 (-)
LOC113544941 samsn1 coding downstream 188960 3064189 ~ 3074453 (-)
serpinh1a serpinh1a,LOC108277285,LOC108435823,LOC107743426,LOC107680328,LOC107570353,LOC107583375,LOC107653702 coding downstream 238968 3018796 ~ 3024445 (-)
LOC113544923 tsku coding downstream 247240 3013907 ~ 3016173 (-)
acer3 acer3,LOC107680329,LOC107653723,LOC107758701,LOC107743427 coding downstream 250322 3003704 ~ 3013091 (-)
bhlha9 bhlha9 coding upstream 33008 3309739 ~ 3311030 (-)
nf1b LOC108276969,LOC108435812,LOC106567758 coding upstream 355427 3632158 ~ 3699612 (-)
LOC113544747 LOC108276974 coding upstream 423739 3700470 ~ 3710581 (-)
LOC113544774 LOC108276973 coding upstream 434292 3711023 ~ 3715177 (-)
ksr1a ksr1,ksr1a,LOC107741140,LOC107653729 coding upstream 439108 3715839 ~ 3750194 (-)
G262728 NA non-coding downstream 121745 3141027 ~ 3141668 (-)
G262681 NA non-coding downstream 238201 3024861 ~ 3025212 (-)
G262646 NA non-coding downstream 276738 2986455 ~ 2986675 (-)
G262598 NA non-coding downstream 349542 2913664 ~ 2913871 (-)
G262572 NA non-coding downstream 407746 2855054 ~ 2855667 (-)
G263077 NA non-coding upstream 41346 3318077 ~ 3325821 (-)
G263117 NA non-coding upstream 85639 3362370 ~ 3414133 (-)
LOC113544916 NA non-coding upstream 595414 3872145 ~ 4007136 (-)
G263272 NA non-coding upstream 621116 3897847 ~ 3898067 (-)
G263397 NA non-coding upstream 835138 4111869 ~ 4112084 (-)
LOC113544717 LOC108276916,LOC108276915 other downstream 295231 2965655 ~ 2968182 (-)
si:ch73-1a9.3 NA other downstream 503228 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 538940 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1483006 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1852474 1265452 ~ 1410939 (-)
akap1a NA other upstream 290688 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 776258 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 1639759 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 1757137 5033868 ~ 5157309 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 1970203 5246934 ~ 5251500 (-)

Expression


Co-expression Network