LOC113544811


Basic Information

Item Value
gene id LOC113544811
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3318106 ~ 3325774 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943792.2
CACTTTCACTGCCGCACAGTTTCAATGGAGGAGCAGCAGCACCGCGCAGAGCGGGCACACAACCTCCTcaacctccacctcctccaccatcaccacccTCCACCTCACCGCCGTAGCGCCATGGACCGGGGGAAATCACACGGCACTCCGAGAGACGTCTGAACAATGCGGTTCATCGCTACTGTGAGCTCAAGCTGCCGGAAACGCAGAAGGAGAAAACAGGTGAAAGTAAATTAATTGGTTTCGACCTGACTGTGAATAAGGACGACTCAGAGTGTTTCTGATGCTGGAGTCGGGAATTCACTGAACGTCTGTTTAAAGCAGGGGGCTGACTCGTGGAGGCCAGAGCGAAACAATTCCTAACTGCAATCGTGCTCACAGTATGGATGGGAATCTTCAGACCTCTGTTTTAAAACATTACGAGGTTAAAAACATGCACGAAAAAGAGCCAGTGTTATCTGTGAACGGCGAGGTGGTCCTCAGTTCTGGTTACATTACAAACGGTTACTCCAGCAAGCCCGCCGACAACGATGGTAGTGGCTCTGAGAGCGGATACACCACGCCTAAAAAGAGGAGAGCGAGACGCAGCAGCGTGAAAGGCACAGAAAGCACCAGTCGGGAAAAGGAGAAAGCAGCGAAACCCTATTCTAAACAGGATACGGAAACTTCAGGCCAGGAGATGTCCGGGAAAGCGCTGCACTCTCGACCTAATTGCACCAGGACTTCCCTTAAACCAGAGGTGCACACAGGGGCTCGTAGGACAGGCGTTCAGGACACGAGCCCTGTGGCTGAGGCGCAGCATAGAAACTTGGACAGCAAGACCTCTATTAGTCTTGGTGGTAAAAAGATTGATGATAGGGTCAATAAAACCAAACTGGTCTCCTCAGTGAACTCTAAAGAGGACTCGTGGACTTTGTTCAAGCCTCCTCCTGTGTTTCCGGTGGACAACAGCAGTGCTAAGATAGTCCCTAAAATCAGTTATGCAAGCAAAGTTAAGGAGAACCTCAACAAAGCGACGCAGGCCAGTGCAGAGACGACACAAACGTCTACAAAGCTCTCGCACGTTCCCATGTCTGCTGTAAAGACTGTCACATCCGCTAGCTTTGCTAACATCCCTGCGTCTCTAGATGCTAATGGGTGTTACTCTGTGGAAGTGTCGTTCAATTCTGCTGCTGGCGTTAACGTCACACCTTCTGCCTCCTCTAACCAGGCTGAAGAAGAAGTAGAGTCTGCCCTGGATAACGGTTGTAGCTCGTCGTCTTGTTTGTCTGCTCCAGAGCCACGGAAATCGAGTCTTTTTGTTTACCCGCACAAACCTTTAAATATGCAACCCCTTGCTGCTCAGACAAATCAGAAAGCTCTCGGGGACATCTTCCAGAACCAGTGGGGCCTGTCGTTTATCAACGAGCCCAATGCAGGCCCAGAGGGGACACCCGTTTCTCGTCTGGCCAAGCCGTTTGAAATTTCGGACATCACATTTCAGGGTGGAAACGTTCCGTTCCTCATCCAGCCATCCCCGAACGCCGTTTCTCTCCCGGCACCTCAGGACGTGCAGAGAAGGACTAATGGGACCGACGTGGCTGTGAAACCGTGTTCCACTTCCCGCACTGCCAGTCAGGACTGTCCACAAGCCCAGCCTGCCCATCAGGAAGAGTGTAAAGTGGAGTGCAGGAGTTCAGAAGCTCCTCATGAGGATTTAGATGCTGACTCTACGAGGAACTACGAGGGATTGTCCACGGCACACACTGTAAAAGAGCAGGATGGAGGGTGGGGATGGACTGATCTGCAAGCTGCTGTCCTTTACCACACTAAAGAATTTGAATATCTTCTCACTCTTCACAAGCAAGatCCAAAAAGGGTGACATATTATGAGGAGGTCATGGACGGACCTGATCATTGAGGTGCTGAGTACCAGTACTACATCTGCTCCACCTTGGGTGCTATAGTCAGATCTGATCCTGGATGTGAATCGTCTGGCCCAACCAACCAGACAAAACTGATAAAGAGACAGAAGTGTGGGATGATGAATGGACTTGCTAAAGCTTTGGAGTTCTGTGGGTTTGCTGTGCACACAAGACTGCTGTGAGCTGTACAGAGGCATTGGACTACGCACAAACACTATAGCAAAACCGTTTAAGGGGGAAGGTGTTTTGCGTGGATCGGCTACGGGGAAGTGATGCGACCACCCCGGAGCCTTCCAGATACGACTACAAGCGTCACAATCATTTGATTTCTTCCCACATTGAAATCGGTCATGCTTGTTTgagttcttctttttttatttatgcaatGCACATAAACAGTCCATAAGGGAAATTTGAATGCTTCCTGACTTTCTCACTAAGGAAAAAGAAGAGTAATGGATTAGTCTTAACCTTATCTGCTTGGAAAAGCCTtaaacagaaacttttttttttttcttcccctcttTGAATTTGTGATCCAGCATTGCAACAAAAGCCTACTTTGAATTTACTTTTTGCTCAGCAGGCTTGttgtaaaactgcttttttttattttagatttctgCAGAAAGTCATTTAGATCTCAGTATTATTAATTCCCAGCCAGTCGGAGTAGAAAAGAAGAGTGTTTTTGCTTTGAGTTGGGTTTCTCAGCGATATATTACTTGAAATACACGGCAACGctgagaaaatggaaaaggaGCGGCCTATGGAGTGGGGGAAAATAAAAGCCTGTAATGAAAGAGTTTGGATCAGGAAAACTTGGTGGCATCCCACACTGACCAAGCTGAacattttacagcaaataaatataaatgactttGTTACACTCGCTGCTGAGAAGCAGCTGTGGCTGGACAAGCTGTACTTGGTCTTTTCCGTTGTTCCCGGTGTAGGACTGTAACCCGAACCTTAATATTTCTTTGCACATTTCTGTTGTGAGAGCTAACATTAAGGCTGTAACCGTAATCAGCGGATCGTGTTAAAGCCTCACCATCTACTGTGACATTTCATGAGTAAGGCCTTTCTTCAGAACTCTATGGTACACTGTGCCGAGTTATCACGGTCACTTTTTTAACTGTCTTGGCCACACAGACCAAAGATCGGGCCGGAGTATAGATAACCATCTCTTAGGCTTGGTTTAAATAAGCAACCTTTCTTGTtggtattctctctctctctctctctctctctcttttttttttttttccctaaccAAGCAAAGGTGTTTGGCTCATCATGAGTAATAGCACTTTATGTACACATACTGGTTTAAAGATGACTACACTTATCTGAAACATGAGTTACTAGCTCCTGCTACGAATGGCTTTGGGCTGTTGTGCTTTCGAGAATAATTAACTCTTTACTCAGGTAGAATCGGGAAAGCCATTACAAAGcggaatattttttttcctttccttttcacaCGGTGCATATGGTGGAGAATGAGCCTGGCTAGTATCGGCACGCGTTGCTATTCGGCAATACTCCTACTGGTCGATTCCAGCAGGACCCTTATAATATTGGGTAGCAGTGATCAAAATGTAGCCactgtggtttttttgtttttctcttaaaggtgcagtttgtaatttttaaactatttcgaagagcttttttttttttttaaaggtccgTTTGCCGAATCTGAATCAAAGTGAAATTGATAGTTTTGGGttgttttctattttgtttggttttacaatgcacataattaaatgaaccaaaaaattTAACTTGGGGTGTGTAGGACTGAAAACATACTCTTTCATTCATCtgtcagaaaaacaacaaagtgCACATAGAAATCACGAAACTCACTCTAGCTTTGAGACGTTGCAGTAGGCGCTAAATAAAttactagataattatataaataaataatttaaaatgttatttgtgtCAGATCCACTGTGTTTTTCGTTTTTGGTCATCGGTCCAAATCCCCAGAACGCattacatttctgcagcactacagctctggctcagtttacaaaaaaaacccagcgtGTTTGATTCACTCATTTCTCATTGTAATCGAACCACATTACAGTTCACATTGAAGCTCGTACACTAACGAGCTGCTTGTTTTGGTCTACACTTGAGTATGATTGTGTTATCTTTCTCTCCTGCCGAAAGAACTGCACGTAggaggagaacacaccagggttcgcTCTACAAGTGAAAGCACCCTGAACCTAAACCCTGATAATTGTATAATTCTACAAATAACAGAAGACACAACAATATTGCTGTGCAATGGATTTGgcttgtttattcatttttaagttTCTGTTTACATGTTTCTGGTCTGGAAATTAATTCCTGTTTTGGCAAAGGAAAGCTGCTCAGCTCTGATATGTTTCCAGCGTGTTCAGTTTGGGGGGATTGACAGACTTGTGTtttctaaaaatgacaaactgctcctttaaaacaCATTACCGCTTTAACCTGAGAGCCCGCCGTGGGCAGTTGGATTCTCTTGTGTACCCCGTTATATGCAATTGCAGGAGTTCTCTGCAGTTCCTTTATCGCTTTCTCTGGATTTGAGGCTCAGTTTTTCTCTTGTACAAGGAATGTAAACTCGCCGAGAGACGCAGGAGGTTCAGGACGCTCATTACGATATTGGTTTTGTCTGTGAGCGAAACGGCGGATTGAGTGTTTGCATGCTTCGCTGTTGAGATGCGATATTTgata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943792.2 True 4661 mRNA 0.45 4 3318106 3325774

Neighbor

gene id symbol gene type direction distance location
usp25 usp25,LOC107653727 coding upstream 139168 3150466 ~ 3178938 (+)
gdpd5a LOC108277122,LOC108435822 coding upstream 255299 3030274 ~ 3062807 (+)
igsf5a NA coding upstream 535681 2767552 ~ 2782425 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding upstream 589688 2721350 ~ 2728418 (+)
LOC113544866 glb1l2,LOC108433266 coding upstream 606993 2698244 ~ 2711113 (+)
LOC113544950 NA coding downstream 325175 3650949 ~ 3654016 (+)
LOC113544949 LOC108276970 coding downstream 329883 3655657 ~ 3659058 (+)
myo18aa LOC108276885 coding downstream 505585 3831359 ~ 3891808 (+)
sez6a LOC108276888,LOC108441783,LOC106603277,LOC105890440,LOC105010768 coding downstream 649906 3975680 ~ 4041056 (+)
phf12a phf12 coding downstream 720503 4046277 ~ 4059813 (+)
G262747 NA non-coding upstream 50253 3234562 ~ 3267853 (+)
G262737 NA non-coding upstream 79289 3189936 ~ 3238817 (+)
G262741 NA non-coding upstream 123624 3189352 ~ 3194482 (+)
G262663 NA non-coding upstream 249178 3067186 ~ 3068928 (+)
G262662 NA non-coding upstream 250376 3066156 ~ 3067730 (+)
G262757 NA non-coding downstream 125 3325899 ~ 3328969 (+)
G262762 NA non-coding downstream 57379 3383153 ~ 3407893 (+)
G262800 NA non-coding downstream 75091 3400865 ~ 3419792 (+)
G262807 NA non-coding downstream 98270 3424044 ~ 3441594 (+)
G262852 NA non-coding downstream 297033 3622807 ~ 3623372 (+)
nrip1b LOC108277259 other upstream 176353 3116169 ~ 3141753 (+)
pcp4a NA other upstream 500843 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 570789 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 1898617 1411986 ~ 1419489 (+)
G261503 NA other upstream 2080974 1205991 ~ 1237132 (+)
triap1 triap1,LOC106568193 other downstream 1752079 5077853 ~ 5080643 (+)
G264336 NA other downstream 2683026 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 2844119 6169893 ~ 6194681 (+)
G264948 NA other downstream 3741097 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 3790277 7116051 ~ 7126246 (+)

Expression


Co-expression Network