LOC113544817 (LOC108276712)


Basic Information

Item Value
gene id LOC113544817
gene name LOC108276712
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5836657 ~ 5842550 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943799.2
GTGCAATTTCAGGGCTGCCCTTTCACGTGTTTTTCACGTGATCACATAATCACGTGTAAAACACTTCAACAAATAATCACACGTGAAGAGTATGTGATTATTTCACAACCTTCCCCTTTCCTGCATGAACACAccgccatcatcatcatggcAGCAACATAAACAGTAGCATCAGTAGCTGCTGTGTCGTGACCGCATCCTCCGCTTCTCAGCTACACATGGAGCCTGGCTAACAAACCCTGCAGTCTTTTCGCTGGAGAATGCCTTATTTTCAAAGATATCGACTGAAATCTGTGAAAACAAAGGCTTCATCTTCCACGGACGCTTTCAGAATGGGCACCTCAGATTACAGGAGATGATCCGCTCCGAGAGCACTATGCCTGCTGTCGCCTTTCAGGACCTAGTTTTGAATATTTACATAGTCATCTTTGGCACCGGGATATTCGTCTTCATCTTGAGCCTGATATTTTGCTGCTGCTTTATAAGTAAATTGCGACATCAAGCCCAGTCTGAGAGATTGGCTTACAAGCTGGTTGTACTGAGAGATGAAACAAAGCACTTGAATATTCATGggCAAACATGCGCTGTGTGTTTAGAGGACTTCAGAATAAAAGACGAACTTGCgatgttgccatgccaacacGGCTTTCACAAAAGGTGTCTGTTAAAGTGGCTGGAGGTGCGCTGCGTGTGTCCCATGTGCAACAAACCGATCGGTGCTCCTAACAAGCACATCAGCAGCATACTGGATGAACTGGTGTAAATAACTGGCACAAGCAAATGCTTCCAACATAAACTCTCCAGTGAATATTCTACAATAGAACGTCAAGATTTGTAAATGACCGAAACCAGCTACGATGGAAGTATGGAACAAGTCTGGAGGCTGGCATCCTGGCACAGGTAGTATTAAAATGTGTCCCAATTGAGGCAAGAGTTCAGTAAAATACTTTTAATGAAGCGAAAAGCTATTATTCTCAATTGCCGATTTAGacactaaacatttaaaatcaatctctccatacaaacaaacattgattaatttttaaaatttattttcctcTCAAAGCATACAGTGTACAGTGAACACATTGATTTCCTTTTCCCTTAATTACAGCTTTTAGTTCCAACAACCCATAAGTATAGCTGTAGGCTTTCAAAATGTTGTACTAGCTTTGTTTAAAATATCCCACTATAAACGGGgatgaattcattttattattattttaaaaatttttttttaaggagatGTAAGTGTGCTGTTACAGTTACCTGTTGGACAAAAACGATCTGCAGCAGCATTtccaaaatcaaaaacaatttaataactGCTTTGGTCCTAGAATATCATTCTTTAGAAATTTCTGGTTTGAAGCGCTTGAtactttaaatgattttatttatttatttttttaaatgtctgtgaggcaatcataataataataataaaaaaaaaaacaacagatccAAAGGGTTCTTGTTCCAcctttaatattttgttaaacaaatGTTCTATTTATGATGCATCTGTGATAGCCATGTTTTGTGTAACAACTGTTTCAATAAGAATAGGAGTAAGGAAATTAAAGGAAGGGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943799.2 True 1595 mRNA 0.38 6 5836657 5842550

Neighbor

gene id symbol gene type direction distance location
ccar2 LOC108276708 coding upstream 1132 5828124 ~ 5835525 (+)
ykt6 ykt6,LOC108441080,LOC107704135,LOC107665783,LOC107733284,LOC107751647,LOC107602234 coding upstream 30160 5797141 ~ 5806497 (+)
aebp1 aebp1,LOC108441076,LOC107751625,LOC107665781,LOC107704136 coding upstream 40169 5783968 ~ 5796488 (+)
pnx LOC108276711 coding upstream 55229 5776736 ~ 5781428 (+)
grk5 LOC108277214 coding upstream 77559 5742231 ~ 5759098 (+)
pargl NA coding downstream 60555 5903105 ~ 5911029 (+)
mrps24 mrps24 coding downstream 169441 6011991 ~ 6015837 (+)
polm polm coding downstream 188430 6030980 ~ 6038104 (+)
ved LOC108276657 coding downstream 202690 6045240 ~ 6047205 (+)
LOC113544829 LOC108276728,LOC108410544 coding downstream 217284 6059834 ~ 6080426 (+)
G264009 LOC108277354 non-coding upstream 109712 5667582 ~ 5726945 (+)
G264002 NA non-coding upstream 131826 5702843 ~ 5704831 (+)
G263993 NA non-coding upstream 263377 5572964 ~ 5573280 (+)
G263953 NA non-coding upstream 631238 5204995 ~ 5205419 (+)
G263801 NA non-coding upstream 811149 5023275 ~ 5025508 (+)
G264056 NA non-coding downstream 79760 5922310 ~ 5926306 (+)
G264424 NA non-coding downstream 331764 6174314 ~ 6174692 (+)
G264426 NA non-coding downstream 352378 6194928 ~ 6195142 (+)
G264427 NA non-coding downstream 365440 6207990 ~ 6209011 (+)
G264428 NA non-coding downstream 375959 6218509 ~ 6283930 (+)
triap1 triap1,LOC106568193 other upstream 756014 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 2260520 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 2694904 3116169 ~ 3141753 (+)
pcp4a NA other upstream 3019394 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 3089340 2744396 ~ 2747317 (+)
G264336 NA other downstream 166250 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 327343 6169893 ~ 6194681 (+)
G264948 NA other downstream 1224321 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 1273501 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 2332964 8175514 ~ 8187611 (+)

Expression


Co-expression Network