glis3 (LOC108277006)


Basic Information

Item Value
gene id glis3
gene name LOC108277006
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 4842081 ~ 4864137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943830.2
cacacagcttaatgTTTCATTACGCACAGCCTTCATCAGAGCGATAAAACAGCGCcataactttttttctttccactttttcttttctatcgTTTGTCTCTAAAGACGCGACAGAACTCCAATAACCGGCGCACGTGACTGTAGACGAGAGAAATATGATTCATGATGTTCTCTCACGCGCTGTCAGTTGAGAAAGTCCAGCTCCAGacttcctgaagactttcacagTATGACACCTCTGTCCCATTGGTATCTTTGCCTGAAGAAGAACTGAGGGAAATGAATGGGAAAGGCTGCAACCTCGTGGTCTCTCCCACCAGCATGCCAAAGTCTCTGGGTGCCATAACTGGGCAGCAGGTACCTCACATCCGAGTGCATGCTGGTAGTTCCCACTCTTCCTCTCATCAGAGAACCCCATGTCCTGGCAGTGAAATGGGCACCGGAGCTGTGGCACCTGGGAGTACGGTGCTTCTACCTACTCTGAGCCTTCGCAGGCAAGTGCTGACCAATGGGAAGCATCATGGCACCTTCAGCGTCCCACAATCTTCGTGGCAACAAGtgtcttcacttcctgtccCACCTGGCAATTCCAATGCAGTGAGATTAAATGGCTCACAGAGTGGTTTCAAAGGTTCTCACTCACTGGAGACCAATAGAAAGCTGCTGGGCGAGTATGGCAGATCAAACCTGCAAGTGACAAGCAGTGCTATGGTTGTACAGAGTGTGAGTCCAGTGTCCACTATCCAAACCTCTGCTTCGCACTgccctcctccctctctgggCCTTTTTGTGCCCTTCACAGATGCCAGGTCTGTGTTGTCCAGAGAGTCCCTGGCTTCCACCACCCTCAGCATTGCAGAGAGCCAGTCAATACGCAGCAGCAAGTTGGACTGGCCCTATGGCTATCGTGTGCTGCCACCACTAGGTAGGCAGAGCAGCTTTAGCCAGACAGCTGAAGGTCCAGAACTTCTGAACCTCCCACCAGGTACTGCCATGTCTGGAGCCACCAGTAGCTCCAATCCAACTTCACTTCCTGCTTACCTGTTTAAGGAAGACATCAACAGCCCCCGCCAATCCAGCCGTTCCAAAAAAAGAGCCCTCTCCATCTCACCTCTGTCTGATGGTATTGGCATTGACTTAAACTCCATTATTCGGACATCACCAACCTCTTTGGTGGCATACATAATTGGTTCCCAAAGTTCTCCAGCCTCACAGCCTACTCCCTCACCACTACAGTCCGACGTATGTGGGCATCTCTTGGGAGTCCGGGGAAGCTGTATCCCCAATCCCAGCTTTGGTTACCCTGGTCCCAAAGTCAGTTCCACTCTTGGTCAGACCTTAACAAGCAATCACCATACTGAAAGAGTGAGTCTCTGCATGCAGAGGTTAGAAGAACAGGGTGCACATGACAGCCAAATAGGAGGAACTAATCTAGTAGTGGAGCATCAGCTTCTGCCAGGACAGGAAATTCTGATAAGCAACATTGCAGCAGGAGATAATGCTCCTCATAACAGTCTGGAAAGCACTACACACCTTCAATTTGAAATATCAGCCATTGTTAGGTCCCCAAGCCCACCTAGGGGACCTCCACCACCCTATCACTCCCACCATGTACACCGACTACCAGGTGGCCACCTGGGGTGCACTCACAATCCCACAGACGCATGCTCTACGCCTCCTACAGACAAACCTGGTGTTCTGCCCCTGGCTCTATGCCCAATGTTagaggaggaagagggggaGCTTGATGATTTTAATGGGGGACACTGTTGCCGTTGGTTGGATTGTAGTGCCACATACAGTCATCAAGAGGAGCTGGTCAAGCACATCGAGAAAGTACATATTGATCAGCGCAAAGGAGAGGACTTCATCTGCTTCTGGGCAGGGTGTCCACGCAGACACAAGCCTTTCAATGCTCGTTACAAACTCCTAATCCACATGCGGGTACATTCGGGGGAGAAACCTAACAGATGTACGTTTGAAGGCTGTCAGAAGGCATTCTCCCGCCTAGAGAACCTCAAAATCCACCTACGGAgccacacaggagagaagccgtacaCGTGTCAGCACCCCGGCTGTCAGAAAGCCTTCAGCAACTCCAGCGATCGCGCCAAGCACCAGCGCACGCATGTTGACACAAAACCTTACGCGTGTCAGATTCAAGGCTGCCAAAAACGTTACACCGATCCCAGCTCTTTGCGAAAGCACATCAAATCACACTCCACCAAGGAGCAGCAGGCTAGGAAGAAGCTGAGAGCCAGCACTGAGATCTACCAGGATGGACTTTCTGAATGTTTAACTATCCAGCCTCTGCAGCACAACCTGTCACCTCTGGAGCTGATAGAGAGCCATTCTCCATCTCTTCCTGCTGACATGTACACAGGTGTGTTTTCCCTCGACCAGTCCAGCCAAATGACTCCTGGTCAGGTTCCGCATTCCGCCTGTGGCTCTCATGTCCCATTGTCTGCACTACCTCCAACTAACAGCAGgtttgATGCTTCTGTGGCACAGCACCCGACCCACCAGGCCACACCTTCAGTTCCTCATTCGCACCACCACATGGTGgcagcacaaaaaaacaacagacttCCAGGATACCCGGAGCACACCTCCgcatccctccctcctcctcaggACGGTTTCCCGGGTCATGCCCAGACGGTGTGCTCGCCTTCATACGCCGAGTCGCCGCAGACAGGAAAGCAGATCTCTGCCTGTTCCATGATGCAGGTCCCTGTGTTCGAGGACAGTCTGGGTTCCTCAGGCACAGCTCAACAGGAACCTCAGCTGATCCACCAAGCTCTGTCGAGCATCGCAGAGTTTGATCCACAGGGCAGATCTGAGGATTCTTTAGGTGAGCAGGAGCATTCAGTGTCAGACGATAACTACCTTCACATACGTGCACCAAGCCGGGGCTCATGCGTCTACACGGAGAGGTGAAAGACGGCCAGCTTTCATCATACATATAACTATACTGATGATTTATTACTGACCTTTTTGTAGTCTTTGAGTCATGGgatcaaaaatgaacaaaaaaaaataaatgaatgtatcaGAACACTCATAACTGAATTAAGTGAATTACAGGCTTCtgttctggatttttttttttttttcatattgctAAGTTTTTATACGTTGCAACTTttgaaattgttattttttaatctcaATTCTCAGTCCTGTAAAACCTTATTTGTGATTTTGACACAGGAAGGCGAACACAATACACACGCTGTGTGAGAACACTAGAAAACATGGGCACCAAGCTAAAGCTAGCTATTCACTGAGACTAGACGCATAGCTAGTTAGCATGTAGAAATGAAGTCTTTTATACTAACAACAGAAAGGGTAATGACCATAAAAACTAGACAATACAttttggaatatcaacatttcactCAGCTTTTTTGGTAAATTAATGAGAAGAGGCTTCTCAGtgactaaaattacactaatTACATTTAGCATCAACCGCTAACTGAAGTGCCATGGGTTGCTCGCAGAAGATGGAAATGTTTAATCATGAATACCACAGGAGCAGACTGTTTAAAAACCTGGTAAACATGACCTCATTTGAACGTAAGATTAATCTAATTATCTTTGAAAAATAAGGTATTCCTTgtatggaaaatatatatatataaacaacaaAAGTGTCTCAGAGATGATCTGTCACATTAAGAACTAATCAAGTACATAATGAAGGCTTTAAACATCACTAGTCTGTTTCTTTAAAGCTACAATCATGACATTACCAGTACTGTTTGTTCTTTCTCAAACACTAGAAAAAAGAGGTTAAGGGCATGTGGTTCAGCTAAACTACACTGAGAAACCCATAAATGCAAACGTCAACGGTGACAAAATGAAATTGCGTCTAAAAGCTCTAATTACAATGTTTTGCATAACCAGTAGCATTAGAGTCAAAACCTCCATTATCTTGGCTCATAGTGTGGTATATCGGTTGCATCTGGGATAAAAGAAagcatttaaatgtgtaatcatCAAGAACGCGGGTGCACAACTGTGTCTTGTGAGGTCTTGTTTTGCTGAAGGGTAATATAGTTGGGTAattttcacatcacatcattCACTTGCACACCTTATTATGAGCCAAATGGTCCGCTTGTTATTCTGTGCTAGTGACCAGAAGTTGATTTCAAATCATATCAGATGTTTGTGAAGAACTGATTCAACCTTGATGTTAGGACATggggtaaaaaaataaattaattttcctTAAGTACTTCTGTACAACAATATCACAGGAAGTAGATACTTTTTTGTGATTCTTGTCAACAAGAACTGCTTGAAACAAATTCAATCAGTAGTTGCTGGGTTATATAGCAGTttttgataatgatggtgatggtgatgatgatgatgatgggtcTTTAGAGTTCTTCACATGACTGCTTCATAGTTCTGTCTTTATCCATgcacaaaaatcacaaatccATCATGAATAGCCATTGCCTTCTAGTCTACAATAAATTTGATCTTGCCTCAGCAAACcttccatcaaaaaaaaaaaaaaagcaattctGATTGTGATTATAATACTGAGAACGTCTACTATCTCACATGCTTATCTTACTTTTGTTAACATTTGTAGCTCATGCAATTACATGTtagtaacatactgtatatgtattcaGCAATTATTCAGCCTGTTCCAGTATCACAAATTAAAATCTATTCAAGACTACAAACCATA

Function

NR:

description
zinc finger protein GLIS3-like

GO: NA

KEGG:

id description
K09232 GLIS1_3; zinc finger protein GLIS1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943830.2 True 4717 mRNA 0.45 12 4842081 4864137

Neighbor

gene id symbol gene type direction distance location
bmpr1bb bmpr1b,LOC108435137 coding upstream 273718 4496472 ~ 4568363 (+)
pdlim5b LOC108277016,LOC108435134 coding upstream 348289 4432696 ~ 4493792 (+)
opn4xa LOC108276607,LOC108435125 coding upstream 415963 4415574 ~ 4426118 (+)
LOC113544945 wdr70 coding upstream 483933 4319943 ~ 4358148 (+)
cplane1 c16h5orf42 coding upstream 523736 4294368 ~ 4318345 (+)
rfx3 rfx3,LOC107710408 coding downstream 1431 4865568 ~ 4883273 (+)
LOC113544783 LOC108277320 coding downstream 130569 4994706 ~ 5016446 (+)
sgsm1b sgsm1b,LOC108276524,LOC108435151 coding downstream 194538 5058675 ~ 5074781 (+)
gal3st1b LOC108277024 coding downstream 225539 5089676 ~ 5101509 (+)
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007,LOC107653779 coding downstream 307214 5171351 ~ 5204423 (+)
G263634 NA non-coding upstream 66372 4721546 ~ 4775709 (+)
G263612 NA non-coding upstream 220591 4618066 ~ 4621490 (+)
G263566 NA non-coding upstream 342837 4498199 ~ 4499244 (+)
G263439 NA non-coding upstream 555875 4285977 ~ 4286206 (+)
G263025 NA non-coding upstream 655827 4185759 ~ 4186254 (+)
G263724 NA non-coding downstream 12108 4876245 ~ 4876505 (+)
G263715 NA non-coding downstream 19190 4883327 ~ 4884727 (+)
G263716 NA non-coding downstream 21209 4885346 ~ 4886801 (+)
G263801 NA non-coding downstream 159138 5023275 ~ 5025508 (+)
G263953 NA non-coding downstream 340858 5204995 ~ 5205419 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 1265944 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 1700328 3116169 ~ 3141753 (+)
pcp4a NA other upstream 2024818 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 2094764 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 3422592 1411986 ~ 1419489 (+)
triap1 triap1,LOC106568193 other downstream 213716 5077853 ~ 5080643 (+)
G264336 NA other downstream 1144663 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 1305756 6169893 ~ 6194681 (+)
G264948 NA other downstream 2202734 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 2251914 7116051 ~ 7126246 (+)

Expression


Co-expression Network