LOC113544842 (LOC108276719,LOC108410541,LOC107722326)


Basic Information

Item Value
gene id LOC113544842
gene name LOC108276719,LOC108410541,LOC107722326
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6099069 ~ 6115392 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943862.2
atgttGCTTTATCCTGTGGACCAGCTACCCATTTATAAAGTGTCAAACCTGTCAGGTACccatttttaaactgttaaaccTGTCCTACAAGATGGCGTGAATGGTGCTCCTTGTTTCGTCATTCCTGTTTCGTTGTCATCAGACCTGTTTTTAAAAGGGTGAAATCTCCTGTGTGGGTTTGAGtcttttttttggaactggagGAACAGTTCAGTGCTTTTCACTTGTAGACTTTGTGCCTGTGTGATGTGGATGTCatctttcattatttaaatcaaGCTGTTTGGATATTTTAAAACATCTGCATTTACAGAACTCTCTCAGGgatttgggaacaacagcatagCCAACAGGACTGAAAAATGTCAAAagataaaagtgaaaaaaaggacaaatctGAAAAGGCTCTGGCAGCAGAAAAAGAACAATTCGTCAAACAACAGCTGCAGAGCATTTCAAAGTGCATAACCTCCACTGAGGCTCCAATAAAGGCGAAATATGGCCGCAATATCCTGTTAGGTACGCATTCGGAAAGTGGAGCCGTTACTTTCTGGTCCCATGCTGTGAATTTGCCACTGGCCAGCAATGCCATCCTCAGCTGGAAGTTCTGCCATATGGTGCATAAACTCCTACGTGATGGCCATCCTAATACCCTGCGAGATAGCAAAGGACATGTCCCAAATATTAAGCAAATGGGATCTTTATGGGGAACCCTCCATGATCGATATGGGCATATTGTTGCTCTGTATGCGAAGTTCCTGTGCATCAAAATTGACTTCCATTGTAAGCACAAAGTGATTCCACCAAATCTTGAAGTTCCTGACGAGGTCCTTGAGAGGGCTATTGCAGTTGATATAAATGAAGTGTTTGAAACCACTGGTGAGGTGCTAGACTATATGGATGCTGCACTTTTATTACAGGAAACAGTTTTCAGACAACTTGAGTCCAACAATACGAGCTCAACGACTGCTGTGGGTCAGTGCCGCCTAGCTCCCTTGGTCCCACTTATCCAAGACTGTAGCCCTCTCTATCACTTCCTTGTCAAGCTCCTGTTCAAGCTACACAGCCGAATACCCATGGATGCTCTGTTGGGCCATCGTGAGCGATTCCGTGATCAGTTCAACAGtcTTTCCCAGTTCTTTGAGAAAGCCAGGAGCATGGAGTTCTTTAAAACCATCATACAGATCCCTGATTTTCCTGATTCCCCTCCAAACTTCCTGCGTGCAGCTTCGTTGGCTGATTATGTCAAGCCAGTGGTGGTTCATAATCAGCTTCCTGAAGATGATGATACAGAGACTCAGGTGGAAGCTGGTGAAGGATACCCAATGTTCTATTCTTTCAACCAGTATGACCCAACAAATGACGTACCTGTCCAAAGGGAGAAAGAGGTCGACTCTCTGAGGAAGGAGCTTGAAGCAATGAGACCTGAGGTGCAGATGTTCAAAGCAGAGGCCCAGCGTGCCGTCATCCACCTGAAGGACCAAGTGAATAAGTTGGAGGCGGAGCTAGAAGACCAACGCACTCACAAGCAGATGGCTATGGTGGAGAACGAGCAGCTGCGCATGGAGGTGGAGGCATTAAGGACACAGACGGCAGTCGCTGCGAGTATGCATGCCTCTGTAGACGACAGCCGAGTTCAAACTGCCCAGATGCATTTCACACGGCTTAAAGAAAAGCACGCAGAGCTGGTCACCAGGCATGCTGATCTCATGAGAAAGAATGCAGACATGGTGAAGCAGCTGACCAGCACTCAGCAAGCTCAGGAGGAGCTGGTCAAGGTCAAGCAGCAGATTGCAGAAGACCTGGAGCAGCTCAAACAGGAGAACAGTACCAAGCTTGAAGCACAGAAGGCAGAAATCATCCAACTGAGGCAAGAGCTGCAGACTGGAAAAGCTGAAATAGTAAATGTTCAGAGTGCACTCCAGAGCAAAGAAAAGgcAGGAGATCAGCTGAGCAGTGTGTTGGTAGGGCTTCAGGCTGAGAAGGAAACATTGATGCGCTCTCTGAAAGAGCAGGAGGCTGAGCTTGCTAACCTGCGCCAGAGCACTCAGCTGCACCAGACCACGCTGCACCAGGAGCGAGACAATACCCAAAGAGAGATTGACTCCCTGAAGAGCCAACTACAGGGAAAAGTGAGTCGAGAACAGGAGCAGCAGATGGAGTTGGATAAACTGAAGAGAGAGCTGGAGTTGAAAAGAGCAGAGGCACTAAGTGTGCAGAGTGCACTACAGAGTAAAGAGACGGCAGGAGATCAGCTGAGCAGTGTGTTGGTGGGGCTTCAGGCTGAGAAGGAAATACTGATGCGTTCTCTGAAAGAGCAGGAGGCTGAGCTTGCTAACCTGCGCCAGGCCGCTCAGCTGCACCAGACCACGCTGCAGCAGGAGAGAGACAAATACCAGAGAGAGATTGACTCCCTGAAGCGCCAACTACAGGAAAAACTACAGCgggagcaggagcagcagctggAAATCGCTCAGCTGAAACGAGAGTTAGCGGAGAGGAGAGCAGAAGTGACAAGTGCTCAAAGTGCTCTTCACAGCAAGGAGACGGCAGGACATGAGATGAGCAGTATGTTGGTGGGGCTGCAGGCTCAAAAGGAAACACTGATGCGTTCTCTGAAAGAGCAGGAGGCTGAGCTCGCTAACCTGCGCCAGGCCGCTCAGCTGCACCAGACCACGCtgcagcaggagagagagaggacccAGAGAGAGATGAGTTCCTTACAGAGCCAACTACAGGCCAAGttgaGCCGGGAGTCGGAGCTCCAGCAGAAGCTGCAGGAGGAGCAGTTTTGCTTATTGCAGTGTGCTGTGGTGGAGGCAGAGGGCATCATACTAGACGCTCTGGCCAAAGTGGACGACCCCATGCACGTGCGCTGTGTTTGCACTCCTGAGTATTTGATCAATCGGGCTGAGACCACTCTGGTGTCCATTGACAAGATGCAGCAAAGTCATGCTGGGTATTTGAGAAATCTGGATGATGCCAGTGGGCTGTTGAGATCTGTGACTCAGTTTTCCCACCTTGCAGCAGACACTATTGTTAATGGATCTGCTGCGTCCCACTCTGCACCCACTGACCAAGCTGACAGGCTGACAGATAACTGCAGAGACTGTGCCACTCACTGTCTGCAGTTCCTTAAAGAACTCAAGCTGAAGGCCACACTGCAGAGAGCCGACCCGAGCGCCATCCGCTATACGGTCCAGCGCATCCTCAACCAAGccactGATTTACGACGCAATGACGCAGATATTCAGAAAGCAGAGCTGGCAGATATGGTGGATAAAGAGATGGCTGCCACGTCCACTGCTATTGAGGATGCTGTTCTGAGGATGGAAGAAATATTGAGCCAAGCAAGAAGAGATACATCAGGATTAAAACTGGAAGTTAACCAAAGCATCCTTGGTTCCTGCTCTGATCTGATGAAAGCCATACACATGTTGGTCACAGCGGCCACAGATTTACAGAAGGACATTGTGGAAAGTGGTCGGGGAGCTGGCTCTGTGAAAGACTTCTATGCCAAGAATTCTTGCTGGACTGAGGGGCTCATCTCTGCCTCCAAGGCTGTAGGATGGGGAGCCACACAGATGGTTGAGTCTGCTGACAAAGTAGTGACAGACCGAGGCAAATATGAGGAACTGATAGTGTGCTCCCACGAGATTGCTGCCAGCACTGCCCAGCTCGTAGCCGCCTCTaagGTAAAGGCAGATCGAAGTAATAAGAAACTTAATACACTGCTGCAAGCCTCACGACATGTAAATGATATGGCAGCGGTCGTTGTGACTTCAACAAAAGCTGGACAGATGCAAATCGAAGATAAGGATCCGATGGATTTCTCAGGCATGTCTCTGATCAAGCTGAAGACAGAGGAAATGGAAACTCAGGTGAAAGTGTTGGAGCTGGAGAATCAGTTGTCCAGTGAACGCCAGCGGCTGGGCGAGCTAAGGAAAAAGCACTATGAGTTGGCTGGAGTTCCTCTTGATCAGACCGTAGAGAGGGATTTTGATGGGTTTGTCAGCGTTTTACCACCAGTGATGCCTGAGCCACCGCTGCCTGAACCACCCAAACTTGAGCCGCCTAAAAACCCACCATCTAAAAAACCTTCCATTTTCCAGAAATCTGGCAGTCTCCTTAAAAATAAGTTTAGGTGAAGCCTTTGAGAAGAATGTACAGTGGAAAAGACCATttgaatttaacattttttggccTTTTGtataaatcattcatttattctcatttagtaacggctttatcctggttattCGCAATGAATCCGGAGTCTAACGCAGgagcactgggtgtgaggcgggaatacaccttggatgagACGGCattccatcacaggacaccatgcatgcacatttacacacttattcacacctaggggcaatttagagtcacca
>XM_034312577.1
atgttGCTTTATCCTGTGGACCAGCTACCCATTTATAAAGTGTCAAACCTGTCAGGTACccatttttaaactgttaaaccTGTCCTACAAGATGGCGTGAATGGTGCTCCTTGTTTCGTCATTCCTGTTTCGTTGTCATCAGACCTGTTTTTAAAAGGGTGAAATCTCCTGTGTGGGTTTGAGtcttttttttggaactggagGAACAGTTCAGTGCTTTTCACTTGTAGACTTTGTGCCTGTGTGATGTGGATGTCatctttcattatttaaatcaaGCTGTTTGGATATTTTAAAACATCTGCATTTACAGAACTCTCTCAGGgatttgggaacaacagcatagATATCCTGTTAGGTACGCATTCGGAAAGTGGAGCCGTTACTTTCTGGTCCCATGCTGTGAATTTGCCACTGGCCAGCAATGCCATCCTCAGCTGGAAGTTCTGCCATATGGTGCATAAACTCCTACGTGATGGCCATCCTAATACCCTGCGAGATAGCAAAGGACATGTCCCAAATATTAAGCAAATGGGATCTTTATGGGGAACCCTCCATGATCGATATGGGCATATTGTTGCTCTGTATGCGAAGTTCCTGTGCATCAAAATTGACTTCCATTGTAAGCACAAAGTGATTCCACCAAATCTTGAAGTTCCTGACGAGGTCCTTGAGAGGGCTATTGCAGTTGATATAAATGAAGTGTTTGAAACCACTGGTGAGGTGCTAGACTATATGGATGCTGCACTTTTATTACAGGAAACAGTTTTCAGACAACTTGAGTCCAACAATACGAGCTCAACGACTGCTGTGGGTCAGTGCCGCCTAGCTCCCTTGGTCCCACTTATCCAAGACTGTAGCCCTCTCTATCACTTCCTTGTCAAGCTCCTGTTCAAGCTACACAGCCGAATACCCATGGATGCTCTGTTGGGCCATCGTGAGCGATTCCGTGATCAGTTCAACAGtcTTTCCCAGTTCTTTGAGAAAGCCAGGAGCATGGAGTTCTTTAAAACCATCATACAGATCCCTGATTTTCCTGATTCCCCTCCAAACTTCCTGCGTGCAGCTTCGTTGGCTGATTATGTCAAGCCAGTGGTGGTTCATAATCAGCTTCCTGAAGATGATGATACAGAGACTCAGGTGGAAGCTGGTGAAGGATACCCAATGTTCTATTCTTTCAACCAGTATGACCCAACAAATGACGTACCTGTCCAAAGGGAGAAAGAGGTCGACTCTCTGAGGAAGGAGCTTGAAGCAATGAGACCTGAGGTGCAGATGTTCAAAGCAGAGGCCCAGCGTGCCGTCATCCACCTGAAGGACCAAGTGAATAAGTTGGAGGCGGAGCTAGAAGACCAACGCACTCACAAGCAGATGGCTATGGTGGAGAACGAGCAGCTGCGCATGGAGGTGGAGGCATTAAGGACACAGACGGCAGTCGCTGCGAGTATGCATGCCTCTGTAGACGACAGCCGAGTTCAAACTGCCCAGATGCATTTCACACGGCTTAAAGAAAAGCACGCAGAGCTGGTCACCAGGCATGCTGATCTCATGAGAAAGAATGCAGACATGGTGAAGCAGCTGACCAGCACTCAGCAAGCTCAGGAGGAGCTGGTCAAGGTCAAGCAGCAGATTGCAGAAGACCTGGAGCAGCTCAAACAGGAGAACAGTACCAAGCTTGAAGCACAGAAGGCAGAAATCATCCAACTGAGGCAAGAGCTGCAGACTGGAAAAGCTGAAATAGTAAATGTTCAGAGTGCACTCCAGAGCAAAGAAAAGgcAGGAGATCAGCTGAGCAGTGTGTTGGTAGGGCTTCAGGCTGAGAAGGAAACATTGATGCGCTCTCTGAAAGAGCAGGAGGCTGAGCTTGCTAACCTGCGCCAGAGCACTCAGCTGCACCAGACCACGCTGCACCAGGAGCGAGACAATACCCAAAGAGAGATTGACTCCCTGAAGAGCCAACTACAGGGAAAAGTGAGTCGAGAACAGGAGCAGCAGATGGAGTTGGATAAACTGAAGAGAGAGCTGGAGTTGAAAAGAGCAGAGGCACTAAGTGTGCAGAGTGCACTACAGAGTAAAGAGACGGCAGGAGATCAGCTGAGCAGTGTGTTGGTGGGGCTTCAGGCTGAGAAGGAAATACTGATGCGTTCTCTGAAAGAGCAGGAGGCTGAGCTTGCTAACCTGCGCCAGGCCGCTCAGCTGCACCAGACCACGCTGCAGCAGGAGAGAGACAAATACCAGAGAGAGATTGACTCCCTGAAGCGCCAACTACAGGAAAAACTACAGCgggagcaggagcagcagctggAAATCGCTCAGCTGAAACGAGAGTTAGCGGAGAGGAGAGCAGAAGTGACAAGTGCTCAAAGTGCTCTTCACAGCAAGGAGACGGCAGGACATGAGATGAGCAGTATGTTGGTGGGGCTGCAGGCTCAAAAGGAAACACTGATGCGTTCTCTGAAAGAGCAGGAGGCTGAGCTCGCTAACCTGCGCCAGGCCGCTCAGCTGCACCAGACCACGCtgcagcaggagagagagaggacccAGAGAGAGATGAGTTCCTTACAGAGCCAACTACAGGCCAAGttgaGCCGGGAGTCGGAGCTCCAGCAGAAGCTGCAGGAGGAGCAGTTTTGCTTATTGCAGTGTGCTGTGGTGGAGGCAGAGGGCATCATACTAGACGCTCTGGCCAAAGTGGACGACCCCATGCACGTGCGCTGTGTTTGCACTCCTGAGTATTTGATCAATCGGGCTGAGACCACTCTGGTGTCCATTGACAAGATGCAGCAAAGTCATGCTGGGTATTTGAGAAATCTGGATGATGCCAGTGGGCTGTTGAGATCTGTGACTCAGTTTTCCCACCTTGCAGCAGACACTATTGTTAATGGATCTGCTGCGTCCCACTCTGCACCCACTGACCAAGCTGACAGGCTGACAGATAACTGCAGAGACTGTGCCACTCACTGTCTGCAGTTCCTTAAAGAACTCAAGCTGAAGGCCACACTGCAGAGAGCCGACCCGAGCGCCATCCGCTATACGGTCCAGCGCATCCTCAACCAAGccactGATTTACGACGCAATGACGCAGATATTCAGAAAGCAGAGCTGGCAGATATGGTGGATAAAGAGATGGCTGCCACGTCCACTGCTATTGAGGATGCTGTTCTGAGGATGGAAGAAATATTGAGCCAAGCAAGAAGAGATACATCAGGATTAAAACTGGAAGTTAACCAAAGCATCCTTGGTTCCTGCTCTGATCTGATGAAAGCCATACACATGTTGGTCACAGCGGCCACAGATTTACAGAAGGACATTGTGGAAAGTGGTCGGGGAGCTGGCTCTGTGAAAGACTTCTATGCCAAGAATTCTTGCTGGACTGAGGGGCTCATCTCTGCCTCCAAGGCTGTAGGATGGGGAGCCACACAGATGGTTGAGTCTGCTGACAAAGTAGTGACAGACCGAGGCAAATATGAGGAACTGATAGTGTGCTCCCACGAGATTGCTGCCAGCACTGCCCAGCTCGTAGCCGCCTCTaagGTAAAGGCAGATCGAAGTAATAAGAAACTTAATACACTGCTGCAAGCCTCACGACATGTAAATGATATGGCAGCGGTCGTTGTGACTTCAACAAAAGCTGGACAGATGCAAATCGAAGATAAGGATCCGATGGATTTCTCAGGCATGTCTCTGATCAAGCTGAAGACAGAGGAAATGGAAACTCAGGTGAAAGTGTTGGAGCTGGAGAATCAGTTGTCCAGTGAACGCCAGCGGCTGGGCGAGCTAAGGAAAAAGCACTATGAGTTGGCTGGAGTTCCTCTTGATCAGACCGTAGAGAGGGATTTTGATGGGTTTGTCAGCGTTTTACCACCAGTGATGCCTGAGCCACCGCTGCCTGAACCACCCAAACTTGAGCCGCCTAAAAACCCACCATCTAAAAAACCTTCCATTTTCCAGAAATCTGGCAGTCTCCTTAAAAATAAGTTTAGGTGAAGCCTTTGAGAAGAATGTACAGTGGAAAAGACCATttgaatttaacattttttggccTTTTGtataaatcattcatttattctcatttagtaacggctttatcctggttattCGCAATGAATCCGGAGTCTAACGCAGgagcactgggtgtgaggcgggaatacaccttggatgagACGGCattccatcacaggacaccatgcatgcacatttacacacttattcacacctaggggcaatttagagtcacca

Function

GO: NA

KEGG:

id description
K04559 HIP1; huntingtin interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943862.2 True 4400 mRNA 0.49 37 6099069 6115392
XM_034312577.1 False 4239 mRNA 0.49 35 6099069 6115392

Neighbor

gene id symbol gene type direction distance location
ccdc62 ccdc62 coding upstream 129 6090772 ~ 6098940 (+)
LOC113544829 LOC108276728,LOC108410544 coding upstream 18643 6059834 ~ 6080426 (+)
ved LOC108276657 coding upstream 51864 6045240 ~ 6047205 (+)
polm polm coding upstream 60965 6030980 ~ 6038104 (+)
mrps24 mrps24 coding upstream 83232 6011991 ~ 6015837 (+)
rilpl1 rilpl1,LOC108410543,LOC106562515,LOC107655265,LOC107704174 coding downstream 761 6116153 ~ 6129642 (+)
sbno1 sbno1 coding downstream 33601 6148993 ~ 6164952 (+)
LOC113544858 cdk2ap1,LOC108425184,LOC105026112,LOC103046776,LOC102226456,LOC107722329 coding downstream 50504 6165896 ~ 6168964 (+)
LOC113544768 pitpnm2,LOC107554528,LOC107722332,LOC107654556 coding downstream 81887 6197279 ~ 6253031 (+)
elovl7b LOC108277391,LOC108425137,LOC107588931,LOC107706775,LOC107704168,LOC106571348 coding downstream 328862 6444254 ~ 6447190 (+)
G264056 NA non-coding upstream 172763 5922310 ~ 5926306 (+)
G264009 LOC108277354 non-coding upstream 372124 5667582 ~ 5726945 (+)
G264002 NA non-coding upstream 394238 5702843 ~ 5704831 (+)
G263993 NA non-coding upstream 525789 5572964 ~ 5573280 (+)
G263953 NA non-coding upstream 893650 5204995 ~ 5205419 (+)
G264424 NA non-coding downstream 58922 6174314 ~ 6174692 (+)
G264426 NA non-coding downstream 79536 6194928 ~ 6195142 (+)
G264427 NA non-coding downstream 92598 6207990 ~ 6209011 (+)
G264428 NA non-coding downstream 103117 6218509 ~ 6283930 (+)
G264475 NA non-coding downstream 266274 6381666 ~ 6452851 (+)
G264336 NA other upstream 87167 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 1018426 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 2522932 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 2957316 3116169 ~ 3141753 (+)
pcp4a NA other upstream 3281806 2795491 ~ 2817263 (+)
LOC113544903 mphosph9 other downstream 54501 6169893 ~ 6194681 (+)
G264948 NA other downstream 951479 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 1000659 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 2060122 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 2214313 8329705 ~ 8353841 (+)

Expression


Co-expression Network