ccdc62 (ccdc62)


Basic Information

Item Value
gene id ccdc62
gene name ccdc62
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6090772 ~ 6098940 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943865.2
TGTTCTCGTCAAAACAACGAATTTCAAAACTCTTAAAAAATGCCGTTGGCTTGAACAGCGAGCTGACTTTTTAATTAGTGTAACCGTGTCACACATTTATGTCATTATTCCTGCTCCAGTGTAAATGTATAACTTATATAGTTAGCTTCATATCGACTATTTAAACTGTAACGGTTTAAATATAATTAGTTAACATTGCGAGGTTGCCGCTACAGGTCTGAATTGGGTTATTAACTATTTGTATTGTTCTTAGCAGAATATTATTAACACTCATAACAGATAGTTTGGTACTATACGCCTGTTAAGACTAAAAGGAGTAAATTGCGGCCTGGTGATAAATATTTTATCCACCATGAAATGATATTTGTTGTCCAGAAGTTGAGACCAGcctgtgtgtgactgtgaaCATGTAAATTACAAACTGCTACAGACACGAGAGCTGCTAATGCTAATGACATTAATGACAGGAGCTGATCATGTGCAAGTCCACAATTCCAGCCTGTGAAGACAAAATGGATGAAGATAGAGGGAAAGACAAGTTTAAGTCAAAAAGATTTGGGGACAGTTTGATGTCTACAAATGGTTTTCTGCTTGACCCCTGGCACAGCACTCCTGTAAAAAAGCACACAGATGAAGGCAGCATGGCAAGACGTACTGCAAACAGTGCCTATGATAACGCTCAGCAATCAACTCAGCAATCAACTCAGCAATCATCTCTCTCAGCTGTGCAGGGTTCTCAGACTCAAGCAAGAGATCTGGAGATCACAACCATCCAAAAGCAGAGGACGGAGCTGCAGCTCCTCATAGCAGAGCTGAAGGATCGTGAGCAGGAGCTCAACAGCATGGCTGCAGCTCATCACAGACAGCTGCAGGCCTGGGAGCAGGACCGCCAGAGAGTGCTGACTCTGGAGCAGAGGTGTGCACGGCTTGAAGATGAGCTGCAGAAGCGCAACGAGGTGATCCGTGCCATTAGCAAGCGTTTAAAGATGGCGGAGGTGCGAGAGCAGGACAGCCGCAGGGAGCTCAGCAGCATCCAGCAGCAGATGCAGGAACTTAACCAGAGACAACAGCACAGCAGCCAACAACACCAAGACCTGGAGGAGAAGAATCGGAGTCTGAACTCGAGCATCCTCACTCTCTCATCCCAGCTTGGCCAGCTTCAGGTTCATGAGGAAGAGCTAAGCTCCATGCTCAAACTGAAGGACAAAGATCTGACGGAAGCCACAGATAACATATTAAGTCTAACTGATCGGCTACGGGAATCGGAGTCATCGCTAAAGGAGTGCCAGTTTCGTGAGAGCAAAATGTTACAGGAAACGGAGGAGTACAAGTGCCGCTTCAGAGAGGCCAGACATCAAAATGCTGAACTAAAAGATGAGCTTCAAGAGAAGACTCTAGAGAACAACAGTCAGAGAGAGGAGCTCATTCGGCTTAGACAAGAGAACCAGCTGTTCAGGAAAGAACTGGCACTCGCAGATGAGGGTGAAAACTGGAAGGAAGAGTTACTTGCACTTGCTCGATCAAAACAAGAGCGCACCGAATCTGAGCTTCTCTGCCTGCGACAGGTGTGTGAGCACCAGCAGAATGACCTACAGCTCTTGAAGCTCAACCTAGAGACCACCAGAGAGGCACTAATGCAGTACGAAAGTCAAAGGTCACTTGCGAGTCCAGGGGATGTgacttgtgtgtatgtggactGTTCTACACCCTCACCACGGAGCAGGACAATGAGCCCTGGCCTTGTAGTGGACACAACACTCAACAAACAGCAGCAGGAGGTGTTCACCTCATCCACGAGTCGCTTGCAGCGCTTGTTGGCAGAGTCGCAGCAAATGGTGGCCAGTCTGGAACTCTCTTCTGGAAAACCTATAAGCCGTTCCCAAAGCCTTCCAAATCACTGCTCAAGTCCCATCCTGTGTTCCACTTCACACTGTCACTCTGTCTGTAGCCTCATCAATACCGAGACTCGTGACCAGTTCCAGTCCAACTATAATAGACAGGAAGAAACACAACCAAGAAAGGATGGCTCCCAAATCCACAGCATCAGCAGTCCACAGAAAACCAAGGAATATGGTCAATAAATCTTTGAATAGATGTCTTTGGATTAAAACAGACCAACATGGACATCGTTAATGGTGCTTCCTGTGGACATAGTCATTCCTCCACACTGCCAGCCCATTTGAATGCAAATAAATAGTTTTAAGGCAA
>XM_034312578.1
TGTTCTCGTCAAAACAACGAATTTCAAAACTCTTAAAAAATGCCGTTGGCTTGAACAGCGAGCTGACTTTTTAATTAGTGTAACCGTGTCACACATTTATGTCATTATTCCTGCTCCAGTGTAAATGTATAACTTATATAGTTAGCTTCATATCGACTATTTAAACTGTAACGGTTTAAATATAATTAGTTAACATTGCGAGGTTGCCGCTACAGGAGCTGATCATGTGCAAGTCCACAATTCCAGCCTGTGAAGACAAAATGGATGAAGATAGAGGGAAAGACAAGTTTAAGTCAAAAAGATTTGGGGACAGTTTGATGTCTACAAATGGTTTTCTGCTTGACCCCTGGCACAGCACTCCTGTAAAAAAGCACACAGATGAAGGCAGCATGGCAAGACGTACTGCAAACAGTGCCTATGATAACGCTCAGCAATCAACTCAGCAATCAACTCAGCAATCATCTCTCTCAGCTGTGCAGGGTTCTCAGACTCAAGCAAGAGATCTGGAGATCACAACCATCCAAAAGCAGAGGACGGAGCTGCAGCTCCTCATAGCAGAGCTGAAGGATCGTGAGCAGGAGCTCAACAGCATGGCTGCAGCTCATCACAGACAGCTGCAGGCCTGGGAGCAGGACCGCCAGAGAGTGCTGACTCTGGAGCAGAGGTGTGCACGGCTTGAAGATGAGCTGCAGAAGCGCAACGAGGTGATCCGTGCCATTAGCAAGCGTTTAAAGATGGCGGAGGTGCGAGAGCAGGACAGCCGCAGGGAGCTCAGCAGCATCCAGCAGCAGATGCAGGAACTTAACCAGAGACAACAGCACAGCAGCCAACAACACCAAGACCTGGAGGAGAAGAATCGGAGTCTGAACTCGAGCATCCTCACTCTCTCATCCCAGCTTGGCCAGCTTCAGGTTCATGAGGAAGAGCTAAGCTCCATGCTCAAACTGAAGGACAAAGATCTGACGGAAGCCACAGATAACATATTAAGTCTAACTGATCGGCTACGGGAATCGGAGTCATCGCTAAAGGAGTGCCAGTTTCGTGAGAGCAAAATGTTACAGGAAACGGAGGAGTACAAGTGCCGCTTCAGAGAGGCCAGACATCAAAATGCTGAACTAAAAGATGAGCTTCAAGAGAAGACTCTAGAGAACAACAGTCAGAGAGAGGAGCTCATTCGGCTTAGACAAGAGAACCAGCTGTTCAGGAAAGAACTGGCACTCGCAGATGAGGGTGAAAACTGGAAGGAAGAGTTACTTGCACTTGCTCGATCAAAACAAGAGCGCACCGAATCTGAGCTTCTCTGCCTGCGACAGGTGTGTGAGCACCAGCAGAATGACCTACAGCTCTTGAAGCTCAACCTAGAGACCACCAGAGAGGCACTAATGCAGTACGAAAGTCAAAGGTCACTTGCGAGTGATGACCCAGCGGAGAATGAGGTGGCAGCTTGCTGTAGCGCCGGAACTGAGGTGGACTTCATAGCCATCTTTAACCACATTGTGGAGATGGAAGACCAAGAGCTGCTTGTGGATGTTAATCTGAATGACCCACAGTTCTATTGTCCAGGGGATGTgacttgtgtgtatgtggactGTTCTACACCCTCACCACGGAGCAGGACAATGAGCCCTGGCCTTGTAGTGGACACAACACTCAACAAACAGCAGCAGGAGGTGTTCACCTCATCCACGAGTCGCTTGCAGCGCTTGTTGGCAGAGTCGCAGCAAATGGTGGCCAGTCTGGAACTCTCTTCTGGAAAACCTATAAGCCGTTCCCAAAGCCTTCCAAATCACTGCTCAAGTCCCATCCTGTGTTCCACTTCACACTGTCACTCTGTCTGTAGCCTCATCAATACCGAGACTCGTGACCAGTTCCAGTCCAACTATAATAGACAGGAAGAAACACAACCAAGAAAGGATGGCTCCCAAATCCACAGCATCAGCAGTCCACAGAAAACCAAGGAATATGGTCAATAAATCTTTGAATAGATGTCTTTGGATTAAAACAGACCAACATGGACATCGTTAATGGTGCTTCCTGTGGACATAGTCATTCCTCCACACTGCCAGCCCATTTGAATGCAAATAAATAGTTTTAAGGCAA

Function

symbol description
ccdc62 Orthologous to human CCDC62 (coiled-coil domain containing 62).

NR:

description
coiled-coil domain-containing protein 62-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943865.2 True 2208 mRNA 0.46 13 6090772 6098940
XM_034312578.1 False 2100 mRNA 0.48 15 6090772 6098940

Neighbor

gene id symbol gene type direction distance location
LOC113544829 LOC108276728,LOC108410544 coding upstream 10346 6059834 ~ 6080426 (+)
ved LOC108276657 coding upstream 43567 6045240 ~ 6047205 (+)
polm polm coding upstream 52668 6030980 ~ 6038104 (+)
mrps24 mrps24 coding upstream 74935 6011991 ~ 6015837 (+)
pargl NA coding upstream 179743 5903105 ~ 5911029 (+)
LOC113544842 LOC108276719,LOC108410541,LOC107722326 coding downstream 129 6099069 ~ 6115392 (+)
rilpl1 rilpl1,LOC108410543,LOC106562515,LOC107655265,LOC107704174 coding downstream 17213 6116153 ~ 6129642 (+)
sbno1 sbno1 coding downstream 50053 6148993 ~ 6164952 (+)
LOC113544858 cdk2ap1,LOC108425184,LOC105026112,LOC103046776,LOC102226456,LOC107722329 coding downstream 66956 6165896 ~ 6168964 (+)
LOC113544768 pitpnm2,LOC107554528,LOC107722332,LOC107654556 coding downstream 98339 6197279 ~ 6253031 (+)
G264056 NA non-coding upstream 164466 5922310 ~ 5926306 (+)
G264009 LOC108277354 non-coding upstream 363827 5667582 ~ 5726945 (+)
G264002 NA non-coding upstream 385941 5702843 ~ 5704831 (+)
G263993 NA non-coding upstream 517492 5572964 ~ 5573280 (+)
G263953 NA non-coding upstream 885353 5204995 ~ 5205419 (+)
G264424 NA non-coding downstream 75374 6174314 ~ 6174692 (+)
G264426 NA non-coding downstream 95988 6194928 ~ 6195142 (+)
G264427 NA non-coding downstream 109050 6207990 ~ 6209011 (+)
G264428 NA non-coding downstream 119569 6218509 ~ 6283930 (+)
G264475 NA non-coding downstream 282726 6381666 ~ 6452851 (+)
G264336 NA other upstream 78870 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 1010129 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 2514635 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 2949019 3116169 ~ 3141753 (+)
pcp4a NA other upstream 3273509 2795491 ~ 2817263 (+)
LOC113544903 mphosph9 other downstream 70953 6169893 ~ 6194681 (+)
G264948 NA other downstream 967931 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 1017111 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 2076574 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 2230765 8329705 ~ 8353841 (+)

Expression


Co-expression Network