LOC113544858 (cdk2ap1,LOC108425184,LOC105026112,LOC103046776,LOC102226456,LOC107722329)


Basic Information

Item Value
gene id LOC113544858
gene name cdk2ap1,LOC108425184,LOC105026112,LOC103046776,LOC102226456,LOC107722329
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6165896 ~ 6168964 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943892.2
TGACGGCCATATTTGCCGGTGCTGCTCTCTCTGCTGTAAACAAAAAGTGACTGTGAGACGGACGCTTCGCTGAATTTAgggacatttttatttctgtaatttatgaTGTCTTTAGGAATGTCTTACAAACCTAACCCCCACCAGCACATTCCGGGAACTTCTGGGAACCAAGCAGGAAACATCCCCTCTCCCTCTTCCAGCATCTCCACAGTTCAGTCATACAAGCCAATTATAAATGACTTTGGGCTGCCGTCGTTTGGATTTTCGCAGGGGCTGAATGGAACTCAAGCTCCACAGAGCAAATATGCTGAACTTCTCGCAATCATCGAAGAGCTCGGGAAAGAAATAAGGCCAACGTACGCTGGAAGTAAAAGTGCCATGGAGCGACTCAAAAGAGGTATAATTCATGCAAGAGGTCTTGTCCGGGAGTGTCTGGCAGAGACGGAAAGAAATGCACGATCTTAGCCTCTGAAGCCTGCCTCTTGTCTAAGGGCAGAAGATTTCTTCTACTACTTTTACAGAAGGGTGCTGCATGGCTTTTTTCCCATAACAGAGGGATGAAACAATCaaaaatttattcattatgtaGTGTAGTTAAAGCATGGGATGGAGGTTTTGCGATGTTATTTGTGATGAATGCAACAGGAGAGATTGAATTTGAGTGTTGCCATTTGggattttatttctcttataactcctattatatatatttttttctgacataAGAACAAGCAAGCTTATCTGCATGCAATGAGGAGATGGACCAGAGTTTGAACGTGCATGGCTTTTACAGGTTTACAGTAGGGAGGTCCTCTTAAATTTGAACAAGTGTAAGGATTTAGGTTTTCTTTAAATTGGGAGACAGTGAGGACAGTTATAGTAATGGCattgttttaggtttttttttatttattaccttgtgtaataaaatgtattttcatgTACAAAAAGGTCACTTTTTGAAATTTTGTATAAAGGTCAATAAACATGACATTTGTTGTCTA
>XM_026943893.2
GTGACGGCCATATTTGCCGGTGCTGCTCTCTCTGCTGTAAACAAAAAGTGACTGTGAGACGGACGCTTCGCTGAATTTAgggacatttttatttctgtaatttatgaTGTCTTTAGGAATGTCTTACAAACCTAACCCCCACCAGCACATTCCGGGAACTTCTGGGAACCAAGGAAACATCCCCTCTCCCTCTTCCAGCATCTCCACAGTTCAGTCATACAAGCCAATTATAAATGACTTTGGGCTGCCGTCGTTTGGATTTTCGCAGGGGCTGAATGGAACTCAAGCTCCACAGAGCAAATATGCTGAACTTCTCGCAATCATCGAAGAGCTCGGGAAAGAAATAAGGCCAACGTACGCTGGAAGTAAAAGTGCCATGGAGCGACTCAAAAGAGGTATAATTCATGCAAGAGGTCTTGTCCGGGAGTGTCTGGCAGAGACGGAAAGAAATGCACGATCTTAGCCTCTGAAGCCTGCCTCTTGTCTAAGGGCAGAAGATTTCTTCTACTACTTTTACAGAAGGGTGCTGCATGGCTTTTTTCCCATAACAGAGGGATGAAACAATCaaaaatttattcattatgtaGTGTAGTTAAAGCATGGGATGGAGGTTTTGCGATGTTATTTGTGATGAATGCAACAGGAGAGATTGAATTTGAGTGTTGCCATTTGggattttatttctcttataactcctattatatatatttttttctgacataAGAACAAGCAAGCTTATCTGCATGCAATGAGGAGATGGACCAGAGTTTGAACGTGCATGGCTTTTACAGGTTTACAGTAGGGAGGTCCTCTTAAATTTGAACAAGTGTAAGGATTTAGGTTTTCTTTAAATTGGGAGACAGTGAGGACAGTTATAGTAATGGCattgttttaggtttttttttatttattaccttgtgtaataaaatgtattttcatgTACAAAAAGGTCACTTTTTGAAATTTTGTATAAAGGTCAATAAACATGACATTTGTTGTCTA
>XM_034312373.1
GTGACGGCCATATTTGCCGGTGCTGCTCTCTCTGCTGTAAACAAAAAGTGACTGTGAGACGGACGCTTCGCTGAATTTAgggacatttttatttctgtaatttatgaTGTCTTTAGGAATGTCTTACAAACCTAACCCCCACCAGCACATTCCGGGAACTTCTGGGAACCAAGTTTTAGCAGGAAACATCCCCTCTCCCTCTTCCAGCATCTCCACAGTTCAGTCATACAAGCCAATTATAAATGACTTTGGGCTGCCGTCGTTTGGATTTTCGCAGGGGCTGAATGGAACTCAAGCTCCACAGAGCAAATATGCTGAACTTCTCGCAATCATCGAAGAGCTCGGGAAAGAAATAAGGCCAACGTACGCTGGAAGTAAAAGTGCCATGGAGCGACTCAAAAGAGGTATAATTCATGCAAGAGGTCTTGTCCGGGAGTGTCTGGCAGAGACGGAAAGAAATGCACGATCTTAGCCTCTGAAGCCTGCCTCTTGTCTAAGGGCAGAAGATTTCTTCTACTACTTTTACAGAAGGGTGCTGCATGGCTTTTTTCCCATAACAGAGGGATGAAACAATCaaaaatttattcattatgtaGTGTAGTTAAAGCATGGGATGGAGGTTTTGCGATGTTATTTGTGATGAATGCAACAGGAGAGATTGAATTTGAGTGTTGCCATTTGggattttatttctcttataactcctattatatatatttttttctgacataAGAACAAGCAAGCTTATCTGCATGCAATGAGGAGATGGACCAGAGTTTGAACGTGCATGGCTTTTACAGGTTTACAGTAGGGAGGTCCTCTTAAATTTGAACAAGTGTAAGGATTTAGGTTTTCTTTAAATTGGGAGACAGTGAGGACAGTTATAGTAATGGCattgttttaggtttttttttatttattaccttgtgtaataaaatgtattttcatgTACAAAAAGGTCACTTTTTGAAATTTTGTATAAAGGTCAATAAACATGACATTTGTTGTCTA

Function

symbol description
cdk2ap1 Enables DNA polymerase binding activity. Involved in positive regulation of protein phosphorylation. Located in cytosol; nucleoplasm; and perinuclear region of cytoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943892.2 False 1004 mRNA 0.40 4 6165897 6168964
XM_026943893.2 False 1002 mRNA 0.40 4 6165896 6168964
XM_034312373.1 True 1011 mRNA 0.40 4 6165896 6168964

Neighbor

gene id symbol gene type direction distance location
sbno1 sbno1 coding upstream 944 6148993 ~ 6164952 (+)
rilpl1 rilpl1,LOC108410543,LOC106562515,LOC107655265,LOC107704174 coding upstream 36254 6116153 ~ 6129642 (+)
LOC113544842 LOC108276719,LOC108410541,LOC107722326 coding upstream 50504 6099069 ~ 6115392 (+)
ccdc62 ccdc62 coding upstream 66956 6090772 ~ 6098940 (+)
LOC113544829 LOC108276728,LOC108410544 coding upstream 85470 6059834 ~ 6080426 (+)
LOC113544768 pitpnm2,LOC107554528,LOC107722332,LOC107654556 coding downstream 28315 6197279 ~ 6253031 (+)
elovl7b LOC108277391,LOC108425137,LOC107588931,LOC107706775,LOC107704168,LOC106571348 coding downstream 275290 6444254 ~ 6447190 (+)
depdc1b depdc1b,LOC107654254,LOC107704111,LOC107709206,LOC107602227 coding downstream 278495 6447459 ~ 6458962 (+)
LOC113544721 pde4d,LOC108276982,LOC108425192,LOC107704165,LOC107709115,LOC107653658,LOC108443004,LOC102789696 coding downstream 300986 6469950 ~ 6651852 (+)
LOC113544738 LOC108277217,LOC108425195 coding downstream 518503 6687467 ~ 6695669 (+)
G264056 NA non-coding upstream 239590 5922310 ~ 5926306 (+)
G264009 LOC108277354 non-coding upstream 438951 5667582 ~ 5726945 (+)
G264002 NA non-coding upstream 461065 5702843 ~ 5704831 (+)
G263993 NA non-coding upstream 592616 5572964 ~ 5573280 (+)
G263953 NA non-coding upstream 960477 5204995 ~ 5205419 (+)
G264424 NA non-coding downstream 5350 6174314 ~ 6174692 (+)
G264426 NA non-coding downstream 25964 6194928 ~ 6195142 (+)
G264427 NA non-coding downstream 39026 6207990 ~ 6209011 (+)
G264428 NA non-coding downstream 49545 6218509 ~ 6283930 (+)
G264475 NA non-coding downstream 212702 6381666 ~ 6452851 (+)
G264336 NA other upstream 153994 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 1085253 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 2589759 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 3024143 3116169 ~ 3141753 (+)
pcp4a NA other upstream 3348633 2795491 ~ 2817263 (+)
LOC113544903 mphosph9 other downstream 929 6169893 ~ 6194681 (+)
G264948 NA other downstream 897907 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 947087 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 2006550 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 2160741 8329705 ~ 8353841 (+)

Expression


Co-expression Network