LOC113544866 (glb1l2,LOC108433266)


Basic Information

Item Value
gene id LOC113544866
gene name glb1l2,LOC108433266
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2698244 ~ 2711113 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943903.2
TTTTTGCATACCGTGCCGTGGATGAAGGAGATGATATTTCTCGCGAACACTTCGCtccaaaataaagcaataaaaaaaataaagtatttgtaAAGAGAATTGCTCATCAGCTCATCAGCCTGATGGTGGTTGTAAGCATCAGGAGCGCGCACAAGCGGCGGTTTGTGCTGCTGTTCCTGAGTATCACCGGGATCATCATTTACCGGCACTTCAGTGGACAACCAGAGAAGGTGCGGATCAGCAGGAAACAGGGATTAACGGTGAACTCTTCCCAGTTCACGCTGGGAGGCGAGCCGTTCCGCGTCCTCGGGGGTTCGCTTCACTACTTCCGCGTCCCTCGGGCCTACTGGAAGGATCgcatgatgaagatgaaggctTGTGGCCTCAACACTCTAACCACATACGTGCCGTGGAACCTGCACGAGTCTGAACGAGGGAACTTCCAGTTCAACGCAGGTCTGGATTTGGAGACGTTTCTCCTCCAGGCGGCTGATGTGGGTCTCTGGGTTATCCTTCATCCGGGTCCCTACGTCTCCTCAGAGCTGGACCTTGGAGGATTGCCGAGCTGGCTGTTAAGAGACAGGAAAATGAAGCTGAGGACGACGTACGCTGGCTTCACGCAGGCCGTCGAGGCTTTTTTGGACAAGCTCATTCCCAAAATGGTGCCCTTACAGttcAGGAAAGGTGGCCCTATCATTGCCGTGCAAGTGGAGCATGAATATGGGTCGTATGCAGTGGACAGGAAATATATGGCGTTTCTGAAAGAGGCCCTTGAGTCGAGGGGCATCAGTGAGCTTCTCCTCACATCAGACAGCCATGAGGGCTTAAAGAGTGGAGGAGTGAGCGGAGTTCTCAGGACTCTGAATCTGCGGAAACTAAATTACGAAGACATCAAGTATCTGGATTCTGTGCAGCCAAACAGCCCTGTTTTAATTACGGAGTACTTGACCGGACGCTTCGATGGCTGGGGAGATCTGCATCACATCTTTCCTGTAGAAGACATGGTCGCAGTGGTTAGAGAGGTTTTGCGGCGTGGCATGTCCATCAACCTGCACATGTTCCATGGAGGAACAAACTTCGGCTTCATGACCGGCGCTGTGGCAAAGCCCTCTTACAAGGCTCTAATCACGAGCTATGattATGACGCGCCTTTGTCCGAGGCCGGTGAATATACACCGAAGTACCATCTGCTGAGAGAACTCCTCAGTCGATACAGTAACGATCCTCTGCCGGAGATGCCGGCTCTGCGCTGGAAGGAAAGCTACGAGCCAGCCATCATGTACCGACACCTCTCTTTATGGGATGCTCTGCCTTTCACACAGGAGccTTTTAAATCCAGGAATCCTGTTAATATGGAGAATCTCCCCGTAAACAACAGGAACGGACAAGCATACGGATACACACTGTATGAGACCACCATCACCACCGGAGGCTTCTTAAAATCTGGAAACAACATCCGAGACAGAGCACTGGTGTTTGTGAACAGAGGCTTCATCGGCACTTTCGACTACAAGAATACAGAGTTAGCAGTTTCTGATGGGAAGgaGGCTCGAACATTGAGTTTGCTGGTGGAGAACTGCGGAAGAGTGCACTTTGGCCAGACCATGGACAATCAGCGCAAAGGGATCGTTGGAGACATTTTACTGAACAATGTGCCTCTTAGGGACTTCACAATTTACAGCCTGGATATGACACGCAGCTTTATTGACAGTTTATACAGAGCTCCGTGGAAGTCTCTCCCTCAGAAGCCAAGCTTTCCGTCATTTCTTCAGGGAAGAATTTTCGTGGATGGATATCCGAGTGACACGTTCGTTAAGCTGCCTAGCTGGAGCAAAGGCGTGATCTTCATCAACAGCCAGAACATCGGACGTTATTGGCACGTCGGCCCCCAGCAGGCGCTCTACATCCCAGGCCCTTTCCTCAACAGTGGAATCAACTTAGTCAGTTATCACAATTTGTATGGTGACAAGagcagtgtgtttttggttaTGTTTTaccatgtgcctttgttttggttttggtcctgtctcccCCCCTGTCATGTAATTGGTCTGTTActtattgtgttcacctgttgtGTGTTTAGTCCATGATTACTTTTTGTACTTATACCTtggtgtgttatgtgtgttatgCCATTGTGAAGTCTTGTCAATtgcatttctgtgctttctgaTTTTGACCCCTACCCGCTTTATTAGTTTAGGATCACAGATTATCCTTGTTTAATGCTGTTtgcctgtgtttttttccccccacttctGTCTCAAATTTGGTCACCTACCAATTCCCATCCaacagccagctctccccatcatacgacagggagggtgaaggctaataTGTGCTGTCtttgagacatgtgaagccagccagctgcATACTATCGAACTGTTGCTCGTGATGCATCACAAACAGTGTAATACACACAGAGGacagtgctatctgccctcttctgcatacgtGAGCTCACAAATGTTCACGATTGGTTAGTGTCCCTGTAATATAtgatccctcccacccagagagcatgacCAATTTTGTTCCTTTGTTCCCTTGTTGCCTTGGGAACCTCAGTGTGAAGGCAGAATGAGGACATTTTACTGAAACATGTACCTGTTTTCTCTTTAAGTAAGCACGTATACGTTTTAAATTTGTGTGACTCTGTGTTGTGCTATGGTgcctttgggtttttttgtctgttattCAAGTGTtgtaattttttcccctttccctACCACTTCCTCTGTGTTTGCTGCTTCGGTGCTTGCTAGACCACCACTGTAAATTTGTTCCTAATGACTTGCCTCAtcaaattaaaagttaaatatgtattaaaaaaaaaaaagaatttgattCCCAAAAGTCCCTCTTCAGATAACAGGTGGGTGTGGAAATAAATCAACATCAGCTTTTTGTTACAGATTTACAAACCAAACTGTTATTTCACCTAGTTAACCTGAATATACTCTCTGGAACGTAAAAACGATGTTCTTTAGGGCAAGtacattagtaaaaaaaaacagtcattttgAGCTGAATTGGAAATACGTCATGTTTGTCTTACAGATTTCTCTGGTTTATTTCAGGTCACTGTATTTGAGGAAGTGGAATCTGATTTTAAACTCCAGTTTGAAACCACTCCTGATCTGGGAATGACCGTCGACATTCAGT
>XM_026943904.2
TTTTTGCATACCGTGCCGTGGATGAAGGAGATGATATTTCTCGCGAACACTTCGCtccaaaataaagcaataaaaaaaataaagtatttgtaAAGAGAATTGCTCATCAGCTCATCAGCCTGATGGTGGTTGTAAGCATCAGGAGCGCGCACAAGCGGCGGTTTGTGCTGCTGTTCCTGAGTATCACCGGGATCATCATTTACCGGCACTTCAGTGGACAACCAGAGAAGGTGCGGATCAGCAGGAAACAGGGATTAACGGTGAACTCTTCCCAGTTCACGCTGGGAGGCGAGCCGTTCCGCGTCCTCGGGGGTTCGCTTCACTACTTCCGCGTCCCTCGGGCCTACTGGAAGGATCgcatgatgaagatgaaggctTGTGGCCTCAACACTCTAACCACATACGTGCCGTGGAACCTGCACGAGTCTGAACGAGGGAACTTCCAGTTCAACGCAGGTCTGGATTTGGAGACGTTTCTCCTCCAGGCGGCTGATGTGGGTCTCTGGGTTATCCTTCATCCGGGTCCCTACGTCTCCTCAGAGCTGGACCTTGGAGGATTGCCGAGCTGGCTGTTAAGAGACAGGAAAATGAAGCTGAGGACGACGTACGCTGGCTTCACGCAGGCCGTCGAGGCTTTTTTGGACAAGCTCATTCCCAAAATGGTGCCCTTACAGttcAGGAAAGGTGGCCCTATCATTGCCGTGCAAGTGGAGCATGAATATGGGTCGTATGCAGTGGACAGGAAATATATGGCGTTTCTGAAAGAGGCCCTTGAGTCGAGGGGCATCAGTGAGCTTCTCCTCACATCAGACAGCCATGAGGGCTTAAAGAGTGGAGGAGTGAGCGGAGTTCTCAGGACTCTGAATCTGCGGAAACTAAATTACGAAGACATCAAGTATCTGGATTCTGTGCAGCCAAACAGCCCTGTTTTAATTACGGAGTACTTGACCGGACGCTTCGATGGCTGGGGAGATCTGCATCACATCTTTCCTGTAGAAGACATGGTCGCAGTGGTTAGAGAGGTTTTGCGGCGTGGCATGTCCATCAACCTGCACATGTTCCATGGAGGAACAAACTTCGGCTTCATGACCGGCGCTGTGGCAAAGCCCTCTTACAAGGCTCTAATCACGAGCTATGattATGACGCGCCTTTGTCCGAGGCCGGTGAATATACACCGAAGTACCATCTGCTGAGAGAACTCCTCAGTCGATACAGTAACGATCCTCTGCCGGAGATGCCGGCTCTGCGCTGGAAGGAAAGCTACGAGCCAGCCATCATGTACCGACACCTCTCTTTATGGGATGCTCTGCCTTTCACACAGGAGccTTTTAAATCCAGGAATCCTGTTAATATGGAGAATCTCCCCGTAAACAACAGGAACGGACAAGCATACGGATACACACTGTATGAGACCACCATCACCACCGGAGGCTTCTTAAAATCTGGAAACAACATCCGAGACAGAGCACTGGTGTTTGTGAACAGAGGCTTCATCGGCACTTTCGACTACAAGAATACAGAGTTAGCAGTTTCTGATGGGAAGgaGGCTCGAACATTGAGTTTGCTGGTGGAGAACTGCGGAAGAGTGCACTTTGGCCAGACCATGGACAATCAGCGCAAAGGGATCGTTGGAGACATTTTACTGAACAATGTGCCTCTTAGGGACTTCACAATTTACAGCCTGGATATGACACGCAGCTTTATTGACAGTTTATACAGAGCTCCGTGGAAGTCTCTCCCTCAGAAGCCAAGCTTTCCGTCATTTCTTCAGGGAAGAATTTTCGTGGATGGATATCCGAGTGACACGTTCGTTAAGCTGCCTAGCTGGAGCAAAGGCGTGATCTTCATCAACAGCCAGAACATCGGACGTTATTGGCACGTCGGCCCCCAGCAGGCGCTCTACATCCCAGGCCCTTTCCTCAACAGTGGAATCAACTTAGTCACTGTATTTGAGGAAGTGGAATCTGATTTTAAACTCCAGTTTGAAACCACTCCTGATCTGGGAATGACCGTCGACATTCAGTGATCGCACGACGGCTTATACAGGTCACCCCAAAGGGTACGGtgaaaaattaaatgcattcaATGTTCCCGTGCTTAATTTATTTCACTGAAGCTACGTGATTATTGTTGCTAACAATTATAAAGGTCTGTCTCACCCAAAGAATATCTGCTCAAAGCAGAGCTGTATTATCATCATCCCTGTAACATCCAGCATCAACCTGAGGATGTGGAAACACACCAAACCGCGCTAA

Function

symbol description
glb1l2 Predicted to enable beta-galactosidase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be located in extracellular region. Predicted to be active in vacuole.

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004565 beta-galactosidase activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943903.2 True 3174 mRNA 0.46 18 2698244 2710882
XM_026943904.2 False 2256 mRNA 0.50 19 2698244 2711113

Neighbor

gene id symbol gene type direction distance location
smtlb sl,LOC108276625 coding upstream 44878 2650654 ~ 2653366 (+)
LOC117599403 NA coding upstream 350859 2343661 ~ 2347385 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding upstream 645008 1982153 ~ 2053236 (+)
avd LOC108277130 coding upstream 825102 1870659 ~ 1873142 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding upstream 871922 1812599 ~ 1826322 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding downstream 10237 2721350 ~ 2728418 (+)
igsf5a NA coding downstream 56439 2767552 ~ 2782425 (+)
gdpd5a LOC108277122,LOC108435822 coding downstream 319161 3030274 ~ 3062807 (+)
usp25 usp25,LOC107653727 coding downstream 439353 3150466 ~ 3178938 (+)
LOC113544811 NA coding downstream 606993 3318106 ~ 3325774 (+)
G262412 NA non-coding upstream 11770 2684795 ~ 2686474 (+)
G262411 stt3a,LOC107758586 non-coding upstream 16529 2680943 ~ 2681715 (+)
G262408 NA non-coding upstream 24483 2673541 ~ 2673761 (+)
G262407 NA non-coding upstream 25671 2670723 ~ 2672573 (+)
G262395 foxred1 non-coding upstream 32774 2639208 ~ 2665470 (+)
G262440 NA non-coding downstream 45494 2756607 ~ 2792408 (+)
G262637 NA non-coding downstream 275362 2986475 ~ 2986675 (+)
G262662 NA non-coding downstream 355043 3066156 ~ 3067730 (+)
G262663 NA non-coding downstream 356073 3067186 ~ 3068928 (+)
G262741 NA non-coding downstream 478239 3189352 ~ 3194482 (+)
ponzr2 LOC108277330 other upstream 1278755 1411986 ~ 1419489 (+)
G261503 NA other upstream 1461112 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1585966 1101789 ~ 1112278 (+)
G261178 NA other upstream 1970519 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 2042035 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 33283 2744396 ~ 2747317 (+)
pcp4a NA other downstream 84378 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 405056 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 542203 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 2366740 5077853 ~ 5080643 (+)

Expression


Co-expression Network