LOC113544876 (LOC108277390)


Basic Information

Item Value
gene id LOC113544876
gene name LOC108277390
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5205917 ~ 5208655 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943923.2
TCTTGAAAGCTTTTCCTCCTGCGGACTTCtattttcttctgctttttctttccttttcaacTCATAGCCAGACTTTGAGTTTTCAACTCGCAAGTTATCAGCAGGGAACGGTGAAGCTAGAGATTTCATCTGGATTTCTCAAAGGCAGCAACATGAATGGCACCGACAACTACTCGAACTATGAAGACGTTCAGTACTTCAGTGACTATGATCCCTGTGACATTGGTTTGTCTCAGGAATCAAAGAACTCCATTGGAACAGTGGCGCTCGTGCTCTACTGCCTGACGTGTGTCCTTGGAGTTCCTGGAAATGCCCTTGTAGTGTGGATTGCTGgtgtgaagatgaagaagacCATTAACACCATCTGGTTTCTGAACCTGGCCATCGCTGACCTTCTGTGCTGCCTGTCCATACCGTTTACTGTGGCTGAAATCCTTCTAGACCATCAGTGGCCATATGGAGATGCTATGTGCAAAGTCCTACCCACCATCATCGTTGTCAACATGTTCGCCAGCATCTTCACCCTGAACTTCATCAGTCTGGATCGCTTCATCCAGGTTGTTAAACCTGTTTGGGCTCAAAATAATCGGACACTTAGGTTAGCATGGGTATGCTGTGCCATGGCATGGGCACTGGCCATAATCCTCAGTCTGCCCACTATGATCCTACGAGAAACGTACACCATGGATACCTTGAATATAACCATCTGCATTTTCAGTATCAGAAATGCTACAGAAGGAGGATGCAGCGCTGACAAAGGTTTCTCTTACAGGGTGCTAACCATGACCCGGTTTGTGTTAGGCTTCCTCATACCACTTCTTTGCATTGTGTTTTGCTACACCTGTATCGCCCGGAAGGTTATGAGCAGCCACTTTCGTGCAGGAAGAGCATTCCGTATCATGCTAGCTGTTGTTGTGGCATTTTTTCTCTCCTGGTTTCCCTACCATGTGGTGGGTCTGGTAGACATTTATGGTGGGGAACAGGATTCCATGCTAGCTAGAGACATGGACCCTTTGGTCATCTCTTTAGCGTACATCAACAGCTGCATGAACCCAATTCTGTACGTGTTTATGGGGCAGGACTTTAAAGAGAAAATTAAACTCTCTTTGAGACGGGTCTTCGAGAAGGCTTTTAGTGAAGATACCACACACTTGTCAGTGAACTCTAAAGGACAGCAGTCACGTTGCACCAACTCCTCAGTTGCCCAGCTGTGACAGTAGAGTCCAAATTATGAGGGACCATTAACCATTTGGACTATTTTGtgcagtgtgtaatatgtgtagtAATAAATGGACCTAAAGGACAAATCTATCCTGAACGATATGCACATTAATCCATATAATTAATGATAAGTAATGATATTTGGAGCTCACTTTCATCTTTCGTCAACCTGTTGGTTCtaactacctgctgatagtggtgccaggcAGGTTTTAGCCCTTACTTTAACCTGTACCTAAAGAGAACAATGCAGTggtgctttagtcttttagtttGTATagctctcttttctctcaacTCTCAACGGTAAtactaataccaccatcaacgCCACCGCCCTTGTTATCTCTTATATCACTAACTAGCTGATCCGGGTCTCTACTGTAAGTGATTTGTAGAgactttgagtccaacatttgcACCATCTCTACTACTTCTAtgttctcattaacatgacattGAACATTGTTGGAAAATGGTGAATAGAGAACAGAGGCTcttgtggttttgttttagGGAACTAACAGAAAACACCTGATCATTATCAATTATGTTTGAGctcactgaatttttttctcctctaaaATGACAGAGCAGGAAACAGCTACAATAACAACTATACAGCACCaaacaacaaattagcaccagaattaTTAAACCAAATTTTTCAATATACACTCAGCTACACACTCACTATcgactttaataggaacacctgctcatttattcagtttttctgtgtaaacaccatatcaccattctgtgtaaactctctgtgactgttgtgcgtgaaaatcccaggaga

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04010 C5AR1, CD88; C5a anaphylatoxin chemotactic receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943923.2 True 2026 mRNA 0.43 2 5205917 5208655

Neighbor

gene id symbol gene type direction distance location
apc apc,LOC107727753,LOC107568587,LOC107692017,LOC107549007,LOC107653779 coding upstream 1494 5171351 ~ 5204423 (+)
gal3st1b LOC108277024 coding upstream 104408 5089676 ~ 5101509 (+)
sgsm1b sgsm1b,LOC108276524,LOC108435151 coding upstream 131136 5058675 ~ 5074781 (+)
LOC113544783 LOC108277320 coding upstream 189471 4994706 ~ 5016446 (+)
rfx3 rfx3,LOC107710408 coding upstream 322644 4865568 ~ 4883273 (+)
cntnap3 LOC108276565,LOC108410547 coding downstream 182029 5390684 ~ 5517746 (+)
zmp:0000001301 LOC108277205,LOC108441065 coding downstream 401527 5610182 ~ 5626256 (+)
LOC113544883 spin1,LOC107740044,LOC107568611,LOC107549006 coding downstream 418775 5627430 ~ 5639581 (+)
nxnl2 nxnl2,LOC107687376 coding downstream 437216 5645871 ~ 5649454 (+)
wu:fb59d01 NA coding downstream 444064 5652719 ~ 5660142 (+)
G263953 NA non-coding upstream 498 5204995 ~ 5205419 (+)
G263801 NA non-coding upstream 180409 5023275 ~ 5025508 (+)
G263716 NA non-coding upstream 319116 4885346 ~ 4886801 (+)
G263715 NA non-coding upstream 321190 4883327 ~ 4884727 (+)
G263724 NA non-coding upstream 329412 4876245 ~ 4876505 (+)
G263993 NA non-coding downstream 364309 5572964 ~ 5573280 (+)
G264009 LOC108277354 non-coding downstream 458927 5667582 ~ 5726945 (+)
G264002 NA non-coding downstream 494188 5702843 ~ 5704831 (+)
G264056 NA non-coding downstream 713655 5922310 ~ 5926306 (+)
G264424 NA non-coding downstream 965659 6174314 ~ 6174692 (+)
triap1 triap1,LOC106568193 other upstream 125274 5077853 ~ 5080643 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 1629780 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 2064164 3116169 ~ 3141753 (+)
pcp4a NA other upstream 2388654 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 2458600 2744396 ~ 2747317 (+)
G264336 NA other downstream 800145 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 961238 6169893 ~ 6194681 (+)
G264948 NA other downstream 1858216 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 1907396 7116051 ~ 7126246 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 2966859 8175514 ~ 8187611 (+)

Expression


Co-expression Network