smtlb (sl,LOC108276625)


Basic Information

Item Value
gene id smtlb
gene name sl,LOC108276625
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2650654 ~ 2653366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943933.2
GGCAAATTTAGACAAAACTCTTCTTACATTCTACAATCATGAACAAGACCAAAGTTCTTCAGGTGTGGATGGGGATCTTGTTATGTTCTGTAAACGGATTACTGGGTTTGGCTCTGGACTGCTCCGATCGCGATCCTACAGGAGCACGATGCTCAATTTCTGTAGAGAAACTTCTTGATCGAGCCATCCAGCATGCTGAGCTCATCTACCGCATCTCAGATGAGGCCAGGACGTTGTTTGAAGAGATGTTCATCCCTTTCTCAATATCCACTCATCAAGGCCACGGAGGCAACTCTTGCACATCCAATCTTGTGCATGTCCCTACATCCACAATCGAAATTCAACAAATTTCGGACAAATGGCTCCTCCACTCGATCTTGATTCTGGTTCAGTTCTGGATCAATCCCCTGGCTGACCTGCAGGATTCTCTCGACATGTACGACAACGCCCCCAGCTCCCTCCTCAGCAAGACCAGGTGGATGTCAACCAAGCTGATGAACCTTAAACAGGGAGTGCTTGTCCTTATGACTAAGATGCTGGATGAAGGAAGTCTGGAGCTGGAAAATAATGAGAGTGTGACACGCCACATTGTTGCTCCTGCTAAGGCGGAGCACATGCTGAGGGACTACATGGTGTTGTCCTGCTTTAAAAAGGATGCTCATAAGATGGAGACATTTCTAAAACTGCTTCGATGCCGCCAAACGGATAAGCTGAGCTGCTCCCTTTTCTAG

Function

symbol description
sl Predicted to enable phosphatidylinositol phospholipase C activity. Involved in several processes, including border follicle cell migration; negative regulation of signal transduction; and response to insulin. Is expressed in anterior midgut primordium; endoderm; posterior midgut primordium; and spermatozoon. Human ortholog(s) of this gene implicated in familial cold autoinflammatory syndrome 3. Orthologous to several human genes including PLCG1 (phospholipase C gamma 1).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943933.2 True 731 mRNA 0.47 5 2650654 2653366

Neighbor

gene id symbol gene type direction distance location
LOC117599403 NA coding upstream 303269 2343661 ~ 2347385 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding upstream 597418 1982153 ~ 2053236 (+)
avd LOC108277130 coding upstream 777512 1870659 ~ 1873142 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding upstream 824332 1812599 ~ 1826322 (+)
LOC113524200 NA coding upstream 1096965 1552268 ~ 1553689 (+)
LOC113544866 glb1l2,LOC108433266 coding downstream 44878 2698244 ~ 2711113 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding downstream 67984 2721350 ~ 2728418 (+)
igsf5a NA coding downstream 114186 2767552 ~ 2782425 (+)
gdpd5a LOC108277122,LOC108435822 coding downstream 376908 3030274 ~ 3062807 (+)
usp25 usp25,LOC107653727 coding downstream 497100 3150466 ~ 3178938 (+)
G262377 NA non-coding upstream 96250 2537357 ~ 2554404 (+)
G262369 NA non-coding upstream 145358 2505079 ~ 2505296 (+)
LOC117599402 NA non-coding upstream 179641 2452017 ~ 2471013 (+)
G262201 NA non-coding upstream 347103 2303340 ~ 2303551 (+)
G262103 NA non-coding upstream 432808 2217486 ~ 2217846 (+)
G262407 NA non-coding downstream 17357 2670723 ~ 2672573 (+)
G262408 NA non-coding downstream 20175 2673541 ~ 2673761 (+)
G262411 stt3a,LOC107758586 non-coding downstream 27577 2680943 ~ 2681715 (+)
G262412 NA non-coding downstream 31429 2684795 ~ 2686474 (+)
G262440 NA non-coding downstream 103241 2756607 ~ 2792408 (+)
ponzr2 LOC108277330 other upstream 1231165 1411986 ~ 1419489 (+)
G261503 NA other upstream 1413522 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1538376 1101789 ~ 1112278 (+)
G261178 NA other upstream 1922929 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 1994445 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 91030 2744396 ~ 2747317 (+)
pcp4a NA other downstream 142125 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 462803 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 599950 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 2424487 5077853 ~ 5080643 (+)

Expression


Co-expression Network