slc25a1b (slc25a1,slc25a1b,LOC108425209,LOC107704153,LOC107706761)


Basic Information

Item Value
gene id slc25a1b
gene name slc25a1,slc25a1b,LOC108425209,LOC107704153,LOC107706761
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7182948 ~ 7197818 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943942.2
TGTTCGGCCTTTCGCCCGATGCTGACAGGAACCAGGAAACTTTGTGCTGTCAGAAGGTGGTATTGTGTAGCTCTGGGTAGACTGTTCAGAAACTAGCCCCGGATAAAACTGAAAGTCAGGTCAGCGAGAAGCGGCTAGTGAATAAAATGTCCGGAGAGGTGAAATTCGTCAACCCCTTCCACAGACCCCGCTGTCTGTCTGCAGCTGCGCCGGCTGGAAAAGCAAAACTCACTCACCCGGGAAAAGCCATTTTAGCGGGTGGAATCGCAGGAGGGATTGAAATCTGCATCACTTTCCCGACAGAGTATGTGAAGACCCAGCTGCAGCTAGACGAGAAGGCGAACCCACCACGCTACAGAGGGATCGCTGATTGTGTGAAGCAGACAGTCCAGGGTCATGGTGTGAAAGGTCTGTACAGGGGCCTCAGCTCGCTACTCTACGGTTCCATCCCCAAAGCTGCTGTAAGGTTCGGCATGTTTGAGTTCCTTAGTAACAAGATGAGGGACGAGTCTGGGAAGCTGGACAGCACCCGAGGCCTGATCTGCGGTCTGGGCGCTGGAGTAGCCGAGGCTGTCCTGGTGGTGTGTCCTATGGAGACGATAAAGGTTAAATTTATTCATGATCAGACCTCAGCAAACCCCAAGTACCGAGGCTTTTTCCACGGCGTCAGGGAAATAGTCAGAACACAAGGACTTAGGGGAACGTATCAGGGATTGACAGCGACAGTATTGAAGCAAGGATCAAACCAGGCTATTCGCTTCTTTGTTATGACCTCCTTGAGAAACTGGTACAAAGGTGACAACCCTAACAAACCCATAAACCCTCTGGTGACTGGAATTTTTGGAGCTATAGCCGGGGCCGCCAGTGTGTTTGGAAACACGCCGCTTGATGTAATTAAGACTCGAATGCAGGGCCTGGAGGCGCACAAATACAAGAGCACTGTGGACTGCGCCATGAAGATAATGAAACACGAAGGACCAGCAGCGTTCTACAAAGGTACTGTTCCGAGACTTGGGCGCGTGTGCTTGGACGTGGCTATCGTGTTCGTGATCTATGATGAGGTAGTGAAGGTTCTTAACATGGTGTGGAAGACAGATTAATGCTGAGAGTGCAGCAAAGGCAGCTCATGGAACACGGCCAGACCTTCACAACGTTGACGGGGAAAGTGAGACACGATGTCAGTAGGGCAAAGCAACATCACACGAGCTGTGAACGTGTTTAAGTTCCCTTATgtaattaagattaaaaaaaaaaaacattcccaaaaaaatgtgatatataaaaatacttGAAAAATTAGttaaagtgggaaaaaaacattgaataCTCCATGGTATGGTTTCAGTAATGGAGTCTTTGAAAAGCCAAATGTTTATAATGCGGAGCGATAAAACTggcttttttaaacataatttttttagtGTCATAGTTTTGTTTCTAgtattttagcctttttttattCTACATTTCTAACTGACAACTGAAAACTCATGAATCTGATTACTTTTCCATTATGTTTATTTTCGGATCAGTTGGTGTTATCTTATGTAAAGACACTAAATATATATGCAGTgatgaggacaaaaaaaaaaaaaaaaatcgtccTTGCACAGGAGTGCAGCATGTGTTACAGCCatgaaaaaaagtttgttaAGGAGGTTAAatccaaaaatgacaaaataataataataatgatcataacaataataataataataataataataatgacattagTAATAATGaactaatgttaataataatgcaaaatagtAATGCAAAAATCTaactttaattcattattagCATTGTAAAAGTGTAATTACACTTAAAACTTATTCTTGcactgaacaacaacaacaacaacaataataatagtaataataataataatatttgattcTATTTGAGCACTATAAGCAAGAATGAGCTTTCAGTGGAGTTATACTGTTGtctgggtgatttttttttttgttctgattaAGCTAATATGATATGATTCCTAAAGTGTTTGCTCGCGTATTTCTAATTTCGTGTACTGAAAAGTTCTTGGATCCAAAGAACATTGAACCAACCTGACACACCACCAAAGCCTTTACCTCCCAGAAACACACATTCCTCGGTATCTCCAGTAAATACATGCACTTTCAAAACCTTAAAGGATTTGGTACTAATTTAAATGAAGTAATGAATTTACTTTAAGTGCCTGACCAGTATTTACTAGTGCTCATGATCAGTGTGTAGCTTTTCTCATAAACTTTTGCCAGGAACAATGATGccaagttttcttttttttttattttttttttttttttttttttttaaataaattttgtcTATACCCTGAACAACAATCTAAATGCAACCTAGAAGACTATTACTAGTGCTGTTAACTAGTGTAGGGTCATGTTCGGTCGACATTAGATTTATGTGTGCtacagaatattttattattttaatattattaatgctaaaatgATAAGAATCCTAAACCTGCCCCAAATTGTTTGGTTTGAAAAGCTGTTCATGGAACTGAAATTGCCTTAAACTGTTCCTTTTTGAGTGCCATCGTCAGATTGATCACTTTTCCTACCTCAAGAAATTCCCCCAGAATCCTAAGTGTCAAGAAGGAGCCATTAGATGTAAAGAAATGGtctctgtctcagtgtctcCCTTACTTACATTGCATATGTAatacactgtatacatatacatatatggatTGAAATATCTTtggcaaatgtaaaaaaaaagtgtcatgaTGCAAAAGCAAATGCAGAAATGTAGATCTTTGTGCTActtaatgttgtgtgtgatatGGGAGCATAACACTGTGTGTAGTCTGTATGTTCAACGAAGAATATTTGTGCCTAATTAATATATGGTTGTCTtctgtattaaaatgtttataccTTAAAAA

Function

symbol description
slc25a1b Involved in neuromuscular junction development. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome. Orthologous to human SLC25A1 (solute carrier family 25 member 1).
slc25a1 Enables citrate secondary active transmembrane transporter activity. Predicted to be involved in mitochondrial citrate transmembrane transport. Located in extracellular exosome and nucleus. Implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome.

NR:

description
PREDICTED: tricarboxylate transport protein, mitochondrial

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15100 SLC25A1, CTP; solute carrier family 25 (mitochondrial citrate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943942.2 True 2920 mRNA 0.39 9 7182948 7197818

Neighbor

gene id symbol gene type direction distance location
tor4aa tor4a coding upstream 8395 7169248 ~ 7174553 (+)
naa25 naa25 coding upstream 30643 7127751 ~ 7152305 (+)
tmed2 tmed2,LOC108425203 coding upstream 68954 7108507 ~ 7113994 (+)
plk2a LOC108277216,LOC108425197,LOC107653495,LOC107602251,LOC107709193,LOC107588929,LOC107706772 coding upstream 481127 6697674 ~ 6701821 (+)
LOC113544738 LOC108277217,LOC108425195 coding upstream 487279 6687467 ~ 6695669 (+)
pi4kaa pi4ka,pi4kaa,LOC108425210,LOC107751806,LOC107704152 coding downstream 1230 7199048 ~ 7243280 (+)
ube2l3a ube2l3,ube2l3a,ube2l3b,ub2l3,LOC106562742,LOC105014760,LOC105911915,LOC107599129 coding downstream 69683 7267501 ~ 7270847 (+)
ankrd34ba LOC108276976 coding downstream 120834 7318652 ~ 7338448 (+)
trnar-ccu_6 NA coding downstream 170662 7368480 ~ 7368552 (+)
trnam-cau_30 NA coding downstream 170744 7368562 ~ 7368633 (+)
G264976 NA non-coding upstream 16875 7165128 ~ 7166073 (+)
G264970 brap,LOC107602221,LOC107712082 non-coding upstream 25381 7154274 ~ 7157567 (+)
G264972 NA non-coding upstream 29084 7152799 ~ 7153864 (+)
G264944 NA non-coding upstream 91986 7089667 ~ 7090962 (+)
G264938 NA non-coding upstream 127289 7055347 ~ 7055659 (+)
G264986 NA non-coding downstream 50367 7248185 ~ 7249078 (+)
G265039 NA non-coding downstream 170671 7368489 ~ 7369482 (+)
G265023 NA non-coding downstream 219416 7417234 ~ 7417633 (+)
G265052 NA non-coding downstream 222192 7420010 ~ 7420244 (+)
G265053 NA non-coding downstream 224952 7422770 ~ 7423011 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other upstream 56702 7116051 ~ 7126246 (+)
G264948 NA other upstream 100507 7066871 ~ 7082441 (+)
LOC113544903 mphosph9 other upstream 988267 6169893 ~ 6194681 (+)
G264336 NA other upstream 1171046 6008800 ~ 6011902 (+)
triap1 triap1,LOC106568193 other upstream 2102305 5077853 ~ 5080643 (+)
tmem167a tmem167a,LOC107658615,LOC107588977 other downstream 977696 8175514 ~ 8187611 (+)
LOC113544929 NA other downstream 1131887 8329705 ~ 8353841 (+)
G265696 NA other downstream 1435817 8633635 ~ 8639728 (+)
G265807 LOC107756568 other downstream 1470996 8668814 ~ 8669797 (+)
LOC113534874 LOC108276751 other downstream 2059125 9256943 ~ 9264111 (+)

Expression


Co-expression Network