igsf5a


Basic Information

Item Value
gene id igsf5a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2767552 ~ 2782425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943976.2
ACACCTGCTGAAGATCCTTTCTGTGCATGTGACTGTGATATATAAGCTTGGGTTTAACTACCAGGGAGACGAGTGTTTACTGTCTTTAAATGCCAAAGAAGGGCGTATTATACAAACCTTATAGCAAACACACTACTTCATGAGTTCAAAGTCATCTTTCTGCTTGACAAGCTACTCGGGCACTTTGGCATTTCAGTGATCATCGTATCTCACGTTCCTCCCTCGAGTTTTGGTATGATCTGGCCTGCATGCAAAGCAGAGAGGTTAAACAGGTACCActcctgtctcctctctcctttcgcatatgtgtgtgtgttaagaagAATGCTGGACTTTGGCCTTCCTACGGCCCAGCGAGATGAGATAAGTGGTGAACATTTGTTTCACGCCTGCTCGGATATGAATCAGAAGGAGAAACCTGGCTCTTCATGAATCTCCGTTGTTCCTAAATAATCCCCGGACTGATTTTTTGGGATTTGAAGATTGGCATGAGCGCTTCTGAAGAAGCATGGACACATTCACCCTTGCAGCTGTCTTGCTTTTCATCACAGGGGgcgTGAGCGCTCAAGTGCTGCAACCTATTAATGAGACGGTGCTCCAAAACTCTGAAGCCAGGTTCAACTGCAGCATTAATACGGCTGGCTGGACTGTCATGACCTGGACAGTGAATGAACGCTTAGCTCTCAGTATTTCAGAGAGCTCAGGCCCGATTGGTAGTCATATCCGGTACTTTGCCACAAACTACTCCACAGCAGGACAATATAAATGGGAGTTTCTGATCAAGGGCGTCACAACAGCCGACGCTGGAAGAGTGGGGTGTCAGGTGCAGGGCAGTCTGCCCGTATCTGCTACACTGACTGTCCAGCAAAATGGCACAGTGGCAATTATGGGGTCAAACCGCACAGCTACAGAAGGAGATCAGGTCACGTTCCAGTGCCTCGCAGTAGGCTGGTTACCTGCAGCGCAGCTTTCCTGGGCTGTGAACGGCATACCGGTGGATAAAGGGGTCAATAACACAAGCCCAGTGGCAGACGGGATTCTCATGAACTCCAACAGCACTCTCAAAATCACCGCCACCAGCAATGCTTCTGTGGACTGTCTGGCATCCATTTCTAGTCTCCCATCACCTGAAATCAGCACTGTCTTCCTGACAGTCCAGAAGGCCGTGCCACCGCCGCGCAGAGACCAGACAGTGTTAATAGCAATCACTGTGGCCTTCAGCTTGGCCGCACTTTTAGTCCTCCTCATCATCGGCATCATCTTCTGCTGTAAGAGGCAGAGGAGAAAGAGATCAAGCTATCAGGACCAAATGAGAGCACACACTCTATCTCATAGACAGCAAGCCGCATACCCTGAGAGAGGACAGGTATGGCATAACATTGGATTCACTGAAGAAAGGCCGAGAGCAGACAACAATGACGGGGTGTACACCATCAGCGGCTTCCAGCAAAGCAATTATATCAACAATATTCAGCTTCCTGAAGTGAATCCCAACCAATACGTCGACAGTTCCACTTACGACGGTTACTCCCTCGATGACCCTGGGctcaaaaaacacagacatttgaCTATCGTGTAAATAGACAAAGCGCTTTATTTTACTAAATAATGCATAGAAGTCTTAACTTATTGAGAAAGATATAATATATGTTCATTAGTGCACTGATTGCAGTGCAAGCCTATGGTATAACTGTATTTTAAACTTCTATgtaaagtatatatttaatttttatttaatgtcagaaaatgttttataactGCACTGTATATAAAAGAGCTATATGAGACGTATACGAGACTTAACGACCTGTTTACATGTACAGATCTCGTACACTGCCTTGATTTACCATTCAAAGGAAGTTTTCTAATAAAAGTTTCCTAATAATGCGTGTTTTCTTGAATGTAAACACAGAACAGTGGTAAGTTTGCATGTCAGAAGCTAAAATTGTGGTCAGTGTTCTTATCAGGCGTTGGAAGAAACATTTGAAACTCTAATGAGACATTGAAAGTCATTATTGTTTTGGAGAATGGATACAGTGTCACAGAAAAGAAGCAGTGAGTTGGTTTACAAATGAACATTTACATGATTGGGTAATGATATAAAGCATTAAGTGGGGCATATTCAGGTTCGCTGGAGTTAATAATAACATTGAAAAATGAGCTCATATGTCTGAAACTCTCATTTGCTATCCTGATCTCCAGTGTACGTGTAGTTTTCTTGCTTGAAGTCCGCTCTTGCTCCTATGTATCCTGAACTGAGTATGTCGAATGGGGATGTCTGAAACAAATAACGTgacgcacgtgtgtgtgtgtgtgtgtgtggggtgcacTATGTAATAACATAACTTCTGACCTGCAAGTGTATTGTTTTTAGTCATACTAACAGTTTCATCATGTTTTAGTATTAATTCTTAAAATCCTGGAAAATGAAGCTCCAATTGCTACATAGAcgacagtgattgcatttcagtgcaaCACTGACTTCTGACtcatttaattcttaaaaagcaATCCTctaatgattgtttttaatttaagagCTCATGCGAGGcaacatgaataaaatgaaggttttgcttttctgcATGTGACTAATGAAAAGCAGTACAGattgtgcattttatttcacttttttttcactggtGTGATTGCGTTTCTCCCTGGCATGGAATCTTCTACATGGTCTAGGTGGATATGGTTTTAATCCATTCCCTTTACTGTATAACaaatcactgactctgaatacagcccggTGTCTTTGTTATACAATAAAGGGGATGAATCATATCCTAGTTCCTTCTCTCAGCCTTTTATTTGAGTATGTTTATTCATACCACATGCTAGGTGCTAATTACCTGAATAAGCTACAAAAGTGATATTTCTGTGatgcaaaaaattttttttaaacattctctCAACACCTGCTACTATTTAGAACTAAACTTTTTGGCAAACACAAGTGTTTGAGATATATCCAAATATTATGGTGGAAACTCATCATGTATTTCTTTCACTATAAAATGAATGGCTttttgaagggttttttttttaaagctatttcCCTGAAtttctgtgtatatttttttctacatcCAATAAAATGAATCACTCGA

Function

NR:

description
immunoglobulin superfamily member 5 isoform X1

GO: NA

KEGG:

id description
K06786 JAM4, JCAM; junctional adhesion molecule 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943976.2 True 3113 mRNA 0.41 9 2767552 2782425

Neighbor

gene id symbol gene type direction distance location
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding upstream 39134 2721350 ~ 2728418 (+)
LOC113544866 glb1l2,LOC108433266 coding upstream 56439 2698244 ~ 2711113 (+)
smtlb sl,LOC108276625 coding upstream 114186 2650654 ~ 2653366 (+)
LOC117599403 NA coding upstream 420167 2343661 ~ 2347385 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding upstream 714316 1982153 ~ 2053236 (+)
gdpd5a LOC108277122,LOC108435822 coding downstream 247849 3030274 ~ 3062807 (+)
usp25 usp25,LOC107653727 coding downstream 368041 3150466 ~ 3178938 (+)
LOC113544811 NA coding downstream 535681 3318106 ~ 3325774 (+)
LOC113544950 NA coding downstream 868524 3650949 ~ 3654016 (+)
LOC113544949 LOC108276970 coding downstream 873232 3655657 ~ 3659058 (+)
G262412 NA non-coding upstream 81078 2684795 ~ 2686474 (+)
G262411 stt3a,LOC107758586 non-coding upstream 85837 2680943 ~ 2681715 (+)
G262408 NA non-coding upstream 93791 2673541 ~ 2673761 (+)
G262407 NA non-coding upstream 94979 2670723 ~ 2672573 (+)
G262395 foxred1 non-coding upstream 102082 2639208 ~ 2665470 (+)
G262637 NA non-coding downstream 204050 2986475 ~ 2986675 (+)
G262662 NA non-coding downstream 283731 3066156 ~ 3067730 (+)
G262663 NA non-coding downstream 284761 3067186 ~ 3068928 (+)
G262741 NA non-coding downstream 406927 3189352 ~ 3194482 (+)
G262737 NA non-coding downstream 407511 3189936 ~ 3238817 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 20235 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 1348063 1411986 ~ 1419489 (+)
G261503 NA other upstream 1530420 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1655274 1101789 ~ 1112278 (+)
G261178 NA other upstream 2039827 725827 ~ 727725 (+)
pcp4a NA other downstream 13066 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 333744 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 470891 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 2295428 5077853 ~ 5080643 (+)
G264336 NA other downstream 3226375 6008800 ~ 6011902 (+)

Expression


Co-expression Network